Wall clock time and date at job start Sat Apr 11 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35363 * 126.38086 * 2 1 4 4 C 1.41502 * 105.49884 * 180.14568 * 3 2 1 5 5 C 1.47714 * 126.51751 * 179.84578 * 4 3 2 6 6 O 1.21565 * 120.00046 * 359.70713 * 5 4 3 7 7 N 1.34778 * 119.99836 * 179.71174 * 5 4 3 8 8 C 1.46507 * 119.99609 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46955 * 324.99659 * 8 7 5 10 10 C 1.52996 * 109.47258 * 85.00044 * 8 7 5 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46991 * 299.99311 * 11 10 8 13 13 H 1.08993 * 109.47839 * 300.00447 * 12 11 10 14 14 N 1.46504 * 109.47050 * 179.97438 * 12 11 10 15 15 C 1.36938 * 119.99260 * 85.00442 * 14 12 11 16 16 H 1.08000 * 120.00609 * 0.02562 * 15 14 12 17 17 C 1.38819 * 119.99743 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99820 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00166 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47195 * 90.00318 * 19 17 15 21 21 H 1.48499 * 109.47032 * 210.00173 * 19 17 15 22 22 H 1.48502 * 109.46930 * 330.00074 * 19 17 15 23 23 C 1.53006 * 109.46626 * 60.00378 * 12 11 10 24 24 C 1.52997 * 109.47127 * 299.99539 * 23 12 11 25 25 N 1.31808 * 106.96476 * 359.57930 * 4 3 2 26 26 N 1.28462 * 110.07234 * 0.26551 * 25 4 3 27 27 C 1.46500 * 124.88570 * 180.02562 * 26 25 4 28 28 C 1.53000 * 109.46973 * 300.02314 * 27 26 25 29 29 C 1.52998 * 109.47461 * 60.02292 * 27 26 25 30 30 H 1.09005 * 109.46687 * 270.32033 * 1 2 3 31 31 H 1.08995 * 109.47500 * 30.32402 * 1 2 3 32 32 H 1.09008 * 109.47012 * 150.32736 * 1 2 3 33 33 H 1.08003 * 127.25507 * 359.97438 * 3 2 1 34 34 H 0.97001 * 120.00320 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.46993 * 300.00050 * 10 8 7 36 36 H 1.09000 * 109.47380 * 59.99156 * 10 8 7 37 37 H 1.09002 * 109.47153 * 179.97438 * 11 10 8 38 38 H 1.08993 * 109.47194 * 60.00154 * 11 10 8 39 39 H 0.96998 * 120.00034 * 265.00623 * 14 12 11 40 40 H 0.97001 * 120.00197 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.46801 * 59.99811 * 23 12 11 42 42 H 1.09001 * 109.46998 * 179.97438 * 23 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 24 23 12 44 44 H 1.08996 * 109.46952 * 300.00302 * 24 23 12 45 45 H 1.09003 * 109.47184 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.47339 * 60.00041 * 28 27 26 47 47 H 1.08999 * 109.47094 * 179.97438 * 28 27 26 48 48 H 1.09000 * 109.47563 * 300.00082 * 28 27 26 49 49 H 1.08999 * 109.47268 * 59.99814 * 29 27 26 50 50 H 1.08999 * 109.47706 * 180.02562 * 29 27 26 51 51 H 1.09007 * 109.46893 * 300.00677 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5854 -0.0035 5 6 4.8764 1.3813 -0.0080 6 8 4.8213 2.5957 -0.0144 7 7 6.0730 0.7610 -0.0051 8 6 7.3072 1.5504 -0.0102 9 1 7.1594 2.4519 -0.6047 10 6 7.6698 1.9392 1.4244 11 6 8.9591 2.7630 1.4192 12 6 10.0925 1.9325 0.8140 13 1 10.2399 1.0309 1.4085 14 7 11.3269 2.7215 0.8084 15 6 12.1229 2.7553 1.9222 16 1 11.8409 2.1999 2.8045 17 6 13.2928 3.5025 1.9168 18 7 13.6367 4.1788 0.8413 19 14 14.3790 3.5480 3.4358 20 1 15.3747 2.4485 3.3655 21 1 15.0857 4.8525 3.5000 22 1 13.5400 3.3793 4.6494 23 6 9.7299 1.5436 -0.6207 24 6 8.4406 0.7198 -0.6154 25 7 3.5420 -0.7296 0.0040 26 7 2.3081 -1.0870 0.0061 27 6 1.8377 -2.4744 0.0145 28 6 2.3576 -3.1967 -1.2300 29 6 2.3564 -3.1813 1.2684 30 1 -0.3633 0.0057 1.0277 31 1 -0.3634 0.8870 -0.5188 32 1 -0.3633 -0.8930 -0.5088 33 1 2.0057 2.1261 -0.0004 34 1 6.1170 -0.2080 0.0003 35 1 6.8621 2.5305 1.8558 36 1 7.8175 1.0377 2.0190 37 1 9.2172 3.0404 2.4412 38 1 8.8117 3.6646 0.8246 39 1 11.5803 3.2200 0.0158 40 1 14.4540 4.7013 0.8376 41 1 9.5826 2.4453 -1.2153 42 1 10.5376 0.9523 -1.0521 43 1 8.1825 0.4424 -1.6375 44 1 8.5880 -0.1817 -0.0208 45 1 0.7478 -2.4885 0.0140 46 1 3.4475 -3.1826 -1.2297 47 1 2.0080 -4.2291 -1.2236 48 1 1.9881 -2.6932 -2.1234 49 1 1.9861 -2.6667 2.1550 50 1 2.0068 -4.2136 1.2744 51 1 3.4464 -3.1670 1.2688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034803821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:44 Heat of formation + Delta-G solvation = 28.481760 kcal Electronic energy + Delta-G solvation = -28696.854533 eV Core-core repulsion = 24825.187618 eV Total energy + Delta-G solvation = -3871.666916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.00034 -39.70127 -37.80914 -36.15430 -34.76569 -33.27565 -32.77398 -31.02921 -30.37371 -30.28908 -27.90325 -27.62763 -27.14037 -24.76368 -23.36531 -22.27478 -21.88031 -21.19913 -20.65197 -19.73417 -19.06653 -17.57290 -17.00844 -16.55106 -16.40461 -15.96386 -15.31333 -15.07021 -14.70135 -14.33371 -14.08317 -13.83407 -13.74731 -13.63354 -13.56799 -13.49308 -13.23253 -13.01786 -12.91154 -12.74831 -12.49007 -12.38983 -11.97059 -11.91928 -11.76950 -11.71846 -11.37061 -11.01321 -10.94539 -10.75983 -10.68905 -10.60787 -10.14574 -10.03681 -9.97339 -9.67711 -9.52725 -9.35868 -9.15380 -8.85038 -8.76922 -6.87740 -5.69943 -2.97990 1.43884 1.88706 2.06851 3.21065 3.43681 3.47702 3.52819 3.54627 3.85142 4.22592 4.25040 4.33889 4.44631 4.60205 4.65059 4.95276 4.96956 4.99697 5.02806 5.08760 5.13676 5.14608 5.27028 5.34243 5.38491 5.43586 5.56108 5.58881 5.60044 5.67457 5.71080 5.77346 5.82659 5.94536 5.97320 6.11398 6.20684 6.33784 6.36755 6.40163 6.51631 6.58106 6.66163 6.75557 6.81679 7.07399 7.23527 7.49810 7.76585 7.78579 8.28779 8.49104 9.59870 10.19215 10.53890 11.52910 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.001987 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.065086 B =14091.137804 C =14393.524958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 C -0.178 4.178 4 C -0.014 4.014 5 C 0.602 3.398 6 O -0.532 6.532 7 N -0.712 5.712 8 C 0.146 3.854 9 H 0.089 0.911 10 C -0.124 4.124 11 C -0.131 4.131 12 C 0.177 3.823 13 H 0.046 0.954 14 N -0.726 5.726 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.120 4.120 24 C -0.118 4.118 25 N -0.257 5.257 26 N -0.275 5.275 27 C 0.142 3.858 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.160 0.840 34 H 0.403 0.597 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.079 0.921 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.543 -17.056 -4.217 35.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.206 4.206 4 C -0.174 4.174 5 C 0.386 3.614 6 O -0.407 6.407 7 N -0.362 5.362 8 C 0.042 3.958 9 H 0.107 0.893 10 C -0.163 4.163 11 C -0.172 4.172 12 C 0.067 3.933 13 H 0.064 0.936 14 N -0.366 5.366 15 C -0.366 4.366 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.159 4.159 24 C -0.157 4.157 25 N -0.092 5.092 26 N -0.065 5.065 27 C 0.041 3.959 28 C -0.221 4.221 29 C -0.221 4.221 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.178 0.822 34 H 0.237 0.763 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.851 -17.281 -4.055 34.729 hybrid contribution 0.208 0.485 0.644 0.833 sum -29.643 -16.796 -3.411 34.241 Atomic orbital electron populations 1.20348 0.86838 1.03736 1.03241 1.21385 0.95380 0.86782 1.08314 1.21518 0.90621 0.99522 1.08980 1.21959 0.95211 0.89719 1.10474 1.16896 0.81702 0.86424 0.76335 1.90806 1.86742 1.12904 1.50211 1.46011 1.05332 1.10631 1.74265 1.21146 0.81993 0.94871 0.97793 0.89318 1.21901 0.98685 1.00356 0.95360 1.22214 0.93837 0.99004 1.02183 1.20246 0.86648 0.93516 0.92887 0.93617 1.42436 1.21571 1.56829 1.15755 1.19249 1.00919 1.23770 0.92652 0.91247 1.24740 0.98622 1.00385 0.97455 1.69662 1.25625 1.35317 1.27642 0.86208 0.80691 0.76875 0.82552 1.21830 1.21848 1.20821 1.21751 0.95448 0.99642 0.99040 1.21743 0.94716 0.98799 1.00425 1.73411 1.02080 1.14683 1.19065 1.45644 1.02712 1.06970 1.51140 1.21632 0.99726 0.76343 0.98175 1.22158 1.03487 1.00540 0.95924 1.22155 1.03488 1.00637 0.95811 0.90395 0.89511 0.91338 0.82207 0.76290 0.92298 0.92331 0.91834 0.92448 0.78307 0.93603 0.91938 0.91394 0.91871 0.91575 0.87471 0.90604 0.90213 0.91846 0.91817 0.90205 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 9.92 36.01 0.36 -0.01 16 2 C 0.01 0.04 6.92 -82.21 -0.57 -0.53 16 3 C -0.18 -2.01 10.73 -39.36 -0.42 -2.43 16 4 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 5 C 0.60 9.04 7.79 -12.39 -0.10 8.95 16 6 O -0.53 -9.74 16.59 5.31 0.09 -9.65 16 7 N -0.71 -9.43 5.07 -54.79 -0.28 -9.71 16 8 C 0.15 2.13 2.46 -67.93 -0.17 1.96 16 9 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 10 C -0.12 -1.98 5.49 -26.73 -0.15 -2.13 16 11 C -0.13 -2.50 5.50 -26.73 -0.15 -2.65 16 12 C 0.18 3.57 2.77 -67.93 -0.19 3.38 16 13 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 14 N -0.73 -18.55 5.12 -53.42 -0.27 -18.82 16 15 C -0.23 -6.63 9.93 -15.06 -0.15 -6.78 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 18 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 19 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C -0.12 -2.00 5.39 -26.73 -0.14 -2.15 16 24 C -0.12 -1.59 5.39 -26.73 -0.14 -1.74 16 25 N -0.26 -2.87 11.33 33.42 0.38 -2.49 16 26 N -0.27 -2.37 3.04 -50.66 -0.15 -2.53 16 27 C 0.14 0.71 3.55 -67.93 -0.24 0.47 16 28 C -0.16 -0.74 9.37 37.16 0.35 -0.39 16 29 C -0.16 -0.77 9.37 37.16 0.35 -0.42 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.18 7.03 -51.92 -0.36 -0.18 16 33 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.40 4.55 8.33 -40.82 -0.34 4.21 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 40 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.11 0.29 6.55 -51.93 -0.34 -0.05 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 412.11 15.07 6.21 6.21 Total: -1.00 -34.53 412.11 -9.28 -43.82 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.91 Total: 9.15 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.05 Total: -5.79 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.40 Total: -61.56 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.53 -9.28 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034803821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.300 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds