Wall clock time and date at job start Sat Apr 11 2020 04:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 109.47133 * 2 1 4 4 N 1.30453 * 125.99203 * 269.96104 * 3 2 1 5 5 N 1.39933 * 108.89943 * 180.02562 * 4 3 2 6 6 C 1.46497 * 125.75393 * 179.97438 * 5 4 3 7 7 C 1.34259 * 108.49028 * 359.97438 * 5 4 3 8 8 C 1.38042 * 107.41806 * 0.02562 * 7 5 4 9 9 C 1.47429 * 126.41284 * 180.26258 * 8 7 5 10 10 O 1.21605 * 119.99874 * 217.23039 * 9 8 7 11 11 N 1.34779 * 120.00214 * 37.22772 * 9 8 7 12 12 C 1.46928 * 120.63075 * 5.03750 * 11 9 8 13 13 C 1.53624 * 108.54245 * 126.36429 * 12 11 9 14 14 C 1.53042 * 109.24283 * 54.85782 * 13 12 11 15 15 C 1.53040 * 109.53520 * 298.51027 * 14 13 12 16 16 C 1.46929 * 120.63160 * 185.31220 * 11 9 8 17 17 H 1.09002 * 109.58249 * 113.80289 * 16 11 9 18 18 C 1.52997 * 109.58645 * 353.37920 * 16 11 9 19 19 H 1.09000 * 109.47450 * 55.96145 * 18 16 11 20 20 C 1.52995 * 109.47173 * 175.96332 * 18 16 11 21 21 N 1.46508 * 109.47049 * 295.96482 * 18 16 11 22 22 C 1.36936 * 119.99857 * 155.00186 * 21 18 16 23 23 H 1.07993 * 120.00186 * 359.97438 * 22 21 18 24 24 C 1.38814 * 119.99798 * 179.97438 * 22 21 18 25 25 N 1.31617 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00139 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46792 * 89.99768 * 26 24 22 28 28 H 1.48493 * 109.46977 * 210.00154 * 26 24 22 29 29 H 1.48499 * 109.46745 * 330.00183 * 26 24 22 30 30 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47195 * 299.99682 * 1 2 3 32 32 H 1.08999 * 109.47588 * 59.99845 * 1 2 3 33 33 H 1.09002 * 109.47195 * 240.00318 * 2 1 3 34 34 H 1.08999 * 109.47588 * 120.00155 * 2 1 3 35 35 H 1.09006 * 109.47124 * 90.01884 * 6 5 4 36 36 H 1.08999 * 109.47437 * 210.02264 * 6 5 4 37 37 H 1.09005 * 109.47314 * 330.02781 * 6 5 4 38 38 H 1.07998 * 126.28893 * 180.02562 * 7 5 4 39 39 H 1.08999 * 109.58446 * 246.20160 * 12 11 9 40 40 H 1.09002 * 109.58398 * 6.62470 * 12 11 9 41 41 H 1.08998 * 109.63420 * 294.86497 * 13 12 11 42 42 H 1.09000 * 109.42971 * 174.72800 * 13 12 11 43 43 H 1.08993 * 109.45974 * 178.48655 * 14 13 12 44 44 H 1.09000 * 109.45910 * 58.52994 * 14 13 12 45 45 H 1.08998 * 109.49736 * 301.41267 * 15 14 13 46 46 H 1.08999 * 109.49252 * 181.31315 * 15 14 13 47 47 H 1.09004 * 109.47052 * 66.32215 * 20 18 16 48 48 H 1.08998 * 109.47444 * 186.31390 * 20 18 16 49 49 H 1.08995 * 109.47169 * 306.32043 * 20 18 16 50 50 H 0.96996 * 119.99554 * 335.00308 * 21 18 16 51 51 H 0.97007 * 119.99979 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1433 -1.0555 5 7 2.7346 3.4043 -0.6442 6 6 3.1251 4.5046 -1.5290 7 6 2.7445 3.4355 0.6980 8 6 2.3085 2.2037 1.1432 9 6 2.1537 1.7857 2.5485 10 8 2.4268 0.6474 2.8778 11 7 1.7096 2.6652 3.4682 12 6 1.2715 4.0094 3.0683 13 6 -0.1455 4.2438 3.6136 14 6 -0.1499 4.0055 5.1254 15 6 0.2439 2.5555 5.4160 16 6 1.6600 2.3000 4.8905 17 1 2.3722 2.9077 5.4488 18 6 2.0076 0.8188 5.0522 19 1 2.9806 0.6227 4.6018 20 6 2.0537 0.4653 6.5400 21 7 0.9884 0.0027 4.3876 22 6 1.3002 -1.2550 3.9446 23 1 2.2975 -1.6451 4.0848 24 6 0.3344 -2.0285 3.3155 25 7 -0.8808 -1.5528 3.1443 26 14 0.7599 -3.7439 2.7105 27 1 0.4915 -4.7295 3.7883 28 1 -0.0703 -4.0701 1.5233 29 1 2.1968 -3.7955 2.3391 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2532 5.1208 -1.7490 36 1 3.8854 5.1127 -1.0389 37 1 3.5270 4.0992 -2.4576 38 1 3.0393 4.2708 1.3158 39 1 1.9526 4.7535 3.4810 40 1 1.2627 4.0823 1.9807 41 1 -0.8409 3.5546 3.1346 42 1 -0.4487 5.2700 3.4061 43 1 -1.1476 4.1970 5.5202 44 1 0.5639 4.6781 5.6011 45 1 -0.4552 1.8822 4.9201 46 1 0.2179 2.3802 6.4915 47 1 1.0542 0.5540 6.9657 48 1 2.4099 -0.5579 6.6595 49 1 2.7298 1.1478 7.0548 50 1 0.0929 0.3532 4.2614 51 1 -1.5558 -2.0935 2.7049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566529708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:28 Heat of formation + Delta-G solvation = 95.470343 kcal Electronic energy + Delta-G solvation = -32278.910645 eV Core-core repulsion = 28410.148572 eV Total energy + Delta-G solvation = -3868.762073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21806 -39.62712 -36.59500 -35.11382 -34.25279 -32.43833 -32.05202 -31.28515 -29.93616 -29.38908 -27.91061 -26.74568 -24.89219 -23.81682 -23.30231 -22.73350 -21.82656 -20.39448 -20.28614 -19.02045 -18.31545 -16.91464 -16.51451 -15.84990 -15.47542 -15.26587 -14.58573 -14.51305 -14.21424 -13.96368 -13.83992 -13.60898 -13.42510 -13.25917 -12.85218 -12.80528 -12.72076 -12.62400 -12.30704 -12.11883 -11.96101 -11.68180 -11.48749 -11.29750 -11.02990 -10.80781 -10.72368 -10.61702 -10.55538 -10.53038 -10.41128 -10.27424 -10.08190 -9.94527 -9.63081 -9.24452 -9.02533 -8.62378 -8.23993 -8.03605 -7.74013 -6.40639 -5.37232 -2.57442 1.84720 2.53839 2.72245 3.58200 3.63459 3.70044 3.72034 4.08123 4.50396 4.75877 4.91607 4.98333 4.99362 5.07173 5.13537 5.15275 5.23448 5.40604 5.51639 5.56189 5.59163 5.72777 5.77825 5.86397 5.87772 5.95624 5.99793 6.09839 6.13072 6.16229 6.21057 6.25160 6.30201 6.35759 6.40061 6.52641 6.60329 6.67521 6.69533 6.83353 6.97702 7.03670 7.11291 7.12350 7.18183 7.21476 7.51450 7.91985 8.11219 8.22938 8.80250 9.26575 9.92757 10.49330 10.86876 11.86693 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.006700 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.887424 B = 4178.159584 C = 6183.393032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.051 4.051 3 C 0.141 3.859 4 N -0.310 5.310 5 N -0.374 5.374 6 C 0.103 3.897 7 C 0.072 3.928 8 C -0.259 4.259 9 C 0.565 3.435 10 O -0.440 6.440 11 N -0.610 5.610 12 C 0.107 3.893 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.058 0.942 18 C 0.174 3.826 19 H 0.076 0.924 20 C -0.169 4.169 21 N -0.698 5.698 22 C -0.167 4.167 23 H 0.061 0.939 24 C -0.024 4.024 25 N -0.942 5.942 26 Si 0.885 3.115 27 H -0.300 1.300 28 H -0.297 1.297 29 H -0.286 1.286 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.176 0.824 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.030 0.970 50 H 0.378 0.622 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 18.196 -2.923 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 C -0.026 4.026 4 N -0.131 5.131 5 N -0.153 5.153 6 C -0.039 4.039 7 C -0.077 4.077 8 C -0.274 4.274 9 C 0.350 3.650 10 O -0.309 6.309 11 N -0.347 5.347 12 C -0.017 4.017 13 C -0.172 4.172 14 C -0.153 4.153 15 C -0.171 4.171 16 C 0.046 3.954 17 H 0.076 0.924 18 C 0.064 3.936 19 H 0.094 0.906 20 C -0.230 4.230 21 N -0.339 5.339 22 C -0.299 4.299 23 H 0.079 0.921 24 C -0.217 4.217 25 N -0.594 5.594 26 Si 0.719 3.281 27 H -0.228 1.228 28 H -0.224 1.224 29 H -0.213 1.213 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.193 0.807 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.049 0.951 50 H 0.213 0.787 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.058 17.532 -4.212 19.021 hybrid contribution -0.226 -0.486 0.356 0.643 sum 5.833 17.046 -3.856 18.424 Atomic orbital electron populations 1.21466 0.93372 1.02368 1.00956 1.20183 0.96969 0.87559 1.04277 1.22561 0.94572 0.96892 0.88573 1.77144 1.22795 0.90273 1.22901 1.48199 1.50964 1.11618 1.04564 1.21828 1.00901 0.86470 0.94700 1.23007 1.01066 0.98703 0.84962 1.20571 1.16688 0.94436 0.95686 1.17301 0.79683 0.85018 0.82951 1.91108 1.45328 1.16333 1.78089 1.47699 1.66627 1.13463 1.06863 1.21867 0.94858 0.84627 1.00376 1.21973 0.97439 1.01119 0.96715 1.21493 1.00902 0.97363 0.95566 1.21984 0.97968 0.96031 1.01100 1.21543 0.95759 0.98138 0.80000 0.92387 1.20589 0.96332 0.86565 0.90124 0.90598 1.22589 0.99945 1.00625 0.99819 1.42375 1.09013 1.14689 1.67855 1.19006 0.94829 0.89690 1.26389 0.92072 1.24415 0.96223 0.97534 1.03501 1.69625 1.02383 1.36453 1.50985 0.86473 0.77023 0.86571 0.78081 1.22824 1.22354 1.21266 0.92025 0.91360 0.94722 0.91770 0.86892 0.90813 0.89673 0.89355 0.80661 0.92692 0.89954 0.91189 0.91897 0.92345 0.92601 0.90166 0.91319 0.93590 0.93002 0.95091 0.78677 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.89 37.15 0.37 -2.16 16 2 C -0.05 -1.02 6.31 -27.89 -0.18 -1.20 16 3 C 0.14 2.65 6.51 -82.02 -0.53 2.12 16 4 N -0.31 -5.33 12.50 33.89 0.42 -4.91 16 5 N -0.37 -4.93 3.98 -67.60 -0.27 -5.20 16 6 C 0.10 0.78 11.44 59.85 0.68 1.47 16 7 C 0.07 0.94 9.06 -16.56 -0.15 0.79 16 8 C -0.26 -4.52 5.34 -105.07 -0.56 -5.09 16 9 C 0.56 10.90 7.16 -12.52 -0.09 10.81 16 10 O -0.44 -10.18 8.20 5.27 0.04 -10.14 16 11 N -0.61 -9.87 2.96 -166.21 -0.49 -10.36 16 12 C 0.11 1.31 5.41 -3.48 -0.02 1.29 16 13 C -0.13 -1.63 6.10 -26.39 -0.16 -1.80 16 14 C -0.12 -1.42 5.88 -26.69 -0.16 -1.58 16 15 C -0.13 -2.05 4.85 -26.61 -0.13 -2.18 16 16 C 0.15 2.45 2.73 -67.60 -0.18 2.27 16 17 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 18 C 0.17 3.51 1.88 -67.93 -0.13 3.38 16 19 H 0.08 1.71 6.07 -51.94 -0.32 1.39 16 20 C -0.17 -3.10 9.09 37.15 0.34 -2.77 16 21 N -0.70 -16.99 3.49 -53.43 -0.19 -17.18 16 22 C -0.17 -4.61 7.87 -15.06 -0.12 -4.73 16 23 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 25 N -0.94 -27.81 13.06 55.49 0.72 -27.09 16 26 Si 0.88 23.27 29.55 -169.99 -5.02 18.24 16 27 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 28 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.11 2.66 6.72 -51.93 -0.35 2.31 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.18 1.63 7.05 -52.49 -0.37 1.26 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.00 4.57 -51.93 -0.24 0.76 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 1.54 6.11 -51.93 -0.32 1.22 16 46 H 0.07 1.01 7.01 -51.93 -0.36 0.65 16 47 H 0.04 0.84 7.02 -51.93 -0.36 0.48 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.38 9.86 5.72 -40.82 -0.23 9.62 16 51 H 0.24 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -32.94 388.61 -8.48 -41.42 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.44 Total: 9.49 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.11 Total: -0.13 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.20 Total: -64.73 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.04 Total: -10.14 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.94 -8.48 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566529708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.888 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds