Wall clock time and date at job start Sat Apr 11 2020 04:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46990 * 2 1 4 4 C 1.34668 * 126.59417 * 85.02086 * 3 2 1 5 5 N 1.34126 * 108.02363 * 179.97438 * 4 3 2 6 6 C 1.30499 * 109.25259 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.64997 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47152 * 305.02550 * 7 6 5 9 9 O 1.21285 * 119.99646 * 4.99519 * 8 7 6 10 10 N 1.34768 * 120.00184 * 185.00523 * 8 7 6 11 11 C 1.46058 * 120.18987 * 174.90596 * 10 8 7 12 12 C 1.53419 * 110.13858 * 293.02368 * 11 10 8 13 13 C 1.53436 * 108.49548 * 316.33711 * 12 11 10 14 14 C 1.53117 * 109.35522 * 287.64305 * 13 12 11 15 15 C 1.52477 * 109.66832 * 77.02893 * 14 13 12 16 16 C 1.53492 * 109.15272 * 43.93094 * 15 14 13 17 17 H 1.09002 * 109.63631 * 5.48273 * 16 15 14 18 18 N 1.46506 * 109.63613 * 125.88291 * 16 15 14 19 19 C 1.36940 * 119.99654 * 205.00230 * 18 16 15 20 20 H 1.07993 * 120.00399 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99638 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00102 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00253 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46664 * 59.99434 * 23 21 19 25 25 H 1.48496 * 109.47264 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47046 * 300.00041 * 23 21 19 27 27 C 1.47138 * 120.19010 * 354.87824 * 10 8 7 28 28 N 1.35040 * 108.70273 * 0.26022 * 6 5 4 29 29 H 0.97003 * 126.39777 * 179.73481 * 28 6 5 30 30 H 1.09005 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47490 * 300.00261 * 1 2 3 32 32 H 1.09001 * 109.46951 * 60.00379 * 1 2 3 33 33 H 1.08996 * 109.47490 * 239.99739 * 2 1 3 34 34 H 1.09001 * 109.46951 * 119.99621 * 2 1 3 35 35 H 1.08002 * 125.98761 * 0.02562 * 4 3 2 36 36 H 1.09001 * 109.47601 * 185.02327 * 7 6 5 37 37 H 1.09005 * 109.47511 * 65.02125 * 7 6 5 38 38 H 1.09000 * 109.36258 * 53.22752 * 11 10 8 39 39 H 1.08998 * 109.36437 * 172.95758 * 11 10 8 40 40 H 1.09003 * 109.63414 * 196.63265 * 12 11 10 41 41 H 1.08997 * 109.63119 * 76.03857 * 12 11 10 42 42 H 1.09004 * 109.49173 * 167.68389 * 13 12 11 43 43 H 1.08998 * 109.49076 * 47.60793 * 13 12 11 44 44 H 1.08993 * 109.44380 * 197.09012 * 14 13 12 45 45 H 1.09006 * 109.43796 * 317.01665 * 14 13 12 46 46 H 1.08998 * 109.52290 * 163.83294 * 15 14 13 47 47 H 1.08994 * 109.52551 * 284.02907 * 15 14 13 48 48 H 0.96994 * 119.99822 * 25.00652 * 18 16 15 49 49 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.84403 * 348.37865 * 27 10 8 51 51 H 1.09001 * 109.84533 * 227.38746 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2114 2.2090 1.0771 5 7 2.6707 3.3952 0.6516 6 6 2.7825 3.3722 -0.6483 7 6 3.2657 4.5112 -1.5087 8 6 2.4359 5.7380 -1.2305 9 8 1.6011 5.7188 -0.3509 10 7 2.6214 6.8565 -1.9591 11 6 1.7463 8.0103 -1.7693 12 6 0.3232 7.6762 -2.2350 13 6 0.4118 6.9241 -3.5695 14 6 0.8188 7.9006 -4.6763 15 6 2.3137 8.1865 -4.5842 16 6 3.0645 6.8694 -4.3443 17 1 2.3651 6.0348 -4.3938 18 7 4.1034 6.7022 -5.3637 19 6 4.5478 5.4484 -5.6890 20 1 4.1323 4.5830 -5.1944 21 6 5.5325 5.2900 -6.6545 22 7 6.0386 6.3447 -7.2576 23 14 6.1395 3.5798 -7.0978 24 1 5.0045 2.7682 -7.6061 25 1 7.1840 3.6821 -8.1483 26 1 6.7118 2.9296 -5.8916 27 6 3.7071 6.9224 -2.9500 28 7 2.3884 2.1604 -1.0954 29 1 2.3648 1.8677 -2.0200 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0197 1.9339 2.1038 36 1 3.1702 4.2386 -2.5597 37 1 4.3110 4.7204 -1.2811 38 1 1.7269 8.2794 -0.7132 39 1 2.1260 8.8513 -2.3495 40 1 -0.2436 8.5974 -2.3707 41 1 -0.1671 7.0473 -1.4920 42 1 -0.5592 6.4894 -3.8071 43 1 1.1562 6.1317 -3.4916 44 1 0.5927 7.4622 -5.6482 45 1 0.2643 8.8319 -4.5605 46 1 2.6566 8.6368 -5.5158 47 1 2.5036 8.8700 -3.7567 48 1 4.4763 7.4795 -5.8081 49 1 6.7264 6.2339 -7.9326 50 1 4.3791 6.0742 -2.8197 51 1 4.2594 7.8547 -2.8323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088329310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:17 Heat of formation + Delta-G solvation = 38.230064 kcal Electronic energy + Delta-G solvation = -30454.494974 eV Core-core repulsion = 26583.250777 eV Total energy + Delta-G solvation = -3871.244197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -42.06611 -40.21350 -37.59535 -34.72400 -34.24527 -33.98488 -32.40379 -32.16835 -31.16143 -29.58639 -27.68093 -26.63068 -26.34511 -24.05918 -23.46401 -22.35731 -21.46546 -20.90857 -20.52894 -19.61999 -18.33110 -17.41945 -17.24639 -16.61781 -15.75895 -15.58332 -15.32027 -15.12322 -14.67129 -14.45358 -14.21674 -14.16256 -13.68699 -13.57752 -13.48700 -13.21235 -13.01010 -12.73486 -12.57712 -12.40319 -12.08602 -11.91486 -11.75045 -11.66590 -11.59961 -11.39461 -11.14457 -11.03836 -10.98229 -10.79735 -10.45168 -10.31224 -9.90990 -9.88006 -9.86315 -9.74234 -9.59502 -9.35262 -9.15068 -8.32857 -8.14197 -7.06490 -5.90094 -3.19818 2.03657 2.92226 2.97065 3.23031 3.32418 3.36829 3.39812 3.50192 4.42350 4.46723 4.69035 4.76379 4.77671 5.04878 5.08502 5.10472 5.18448 5.20638 5.25943 5.37797 5.40611 5.41527 5.49805 5.52823 5.55653 5.60688 5.62817 5.70063 5.77971 5.84211 5.89142 5.94406 5.96357 6.05862 6.06725 6.20887 6.23710 6.31120 6.33081 6.41818 6.52687 6.62974 6.68875 6.81788 6.84338 7.00537 7.39506 7.52922 7.71256 8.24182 8.28271 8.51659 9.39484 9.96653 10.30756 11.31961 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004362 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.094142 B = 6416.800702 C = 8712.879797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.029 4.029 4 C -0.024 4.024 5 N -0.459 5.459 6 C 0.226 3.774 7 C -0.058 4.058 8 C 0.521 3.479 9 O -0.522 6.522 10 N -0.605 5.605 11 C 0.114 3.886 12 C -0.133 4.133 13 C -0.130 4.130 14 C -0.112 4.112 15 C -0.136 4.136 16 C 0.158 3.842 17 H 0.062 0.938 18 N -0.718 5.718 19 C -0.247 4.247 20 H 0.068 0.932 21 C -0.006 4.006 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.080 3.920 28 N -0.562 5.562 29 H 0.417 0.583 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.385 0.615 49 H 0.257 0.743 50 H 0.086 0.914 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -4.642 10.938 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.173 4.173 5 N -0.177 5.177 6 C -0.038 4.038 7 C -0.100 4.100 8 C 0.307 3.693 9 O -0.397 6.397 10 N -0.339 5.339 11 C -0.009 4.009 12 C -0.171 4.171 13 C -0.167 4.167 14 C -0.150 4.150 15 C -0.174 4.174 16 C 0.047 3.953 17 H 0.080 0.920 18 N -0.360 5.360 19 C -0.378 4.378 20 H 0.086 0.914 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.045 4.045 28 N -0.165 5.165 29 H 0.254 0.746 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.182 0.818 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.219 0.781 49 H 0.067 0.933 50 H 0.104 0.896 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.974 -4.136 11.914 16.078 hybrid contribution 0.439 -1.476 -1.568 2.198 sum -9.535 -5.612 10.346 15.147 Atomic orbital electron populations 1.21777 0.94554 1.01677 1.02541 1.19954 0.95958 0.89266 1.03209 1.21185 1.09383 0.96455 0.87399 1.22068 1.06485 0.90317 0.98439 1.70253 1.17663 1.21691 1.08118 1.22328 1.03766 0.86677 0.91003 1.20037 1.01457 0.89439 0.99070 1.19999 0.83937 0.83929 0.81420 1.90718 1.35103 1.83265 1.30634 1.48045 1.32646 1.13893 1.39312 1.21566 0.90165 0.88355 1.00775 1.22072 0.96777 1.00618 0.97659 1.21958 1.01235 0.99264 0.94251 1.21470 0.96254 0.98712 0.98542 1.22248 0.95000 0.98300 1.01832 1.21121 0.90656 0.95858 0.87666 0.91994 1.42535 1.44023 1.06461 1.42943 1.19111 1.16222 0.85146 1.17307 0.91434 1.24722 0.99426 0.96926 0.99257 1.69636 1.30969 1.27739 1.29199 0.86353 0.78330 0.84049 0.77929 1.21301 1.21593 1.21203 1.23203 0.88825 1.02999 0.89497 1.43126 1.51141 1.12589 1.09657 0.74558 0.92195 0.92077 0.92847 0.91348 0.89617 0.81783 0.87227 0.86297 0.91961 0.89335 0.91524 0.91394 0.93125 0.90185 0.92254 0.92682 0.91412 0.91815 0.78054 0.93288 0.89573 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.38 6.49 -27.88 -0.18 -0.56 16 3 C -0.03 -0.34 6.49 -81.60 -0.53 -0.87 16 4 C -0.02 -0.34 11.79 -17.81 -0.21 -0.55 16 5 N -0.46 -7.87 10.48 -10.82 -0.11 -7.98 16 6 C 0.23 3.46 7.01 -155.42 -1.09 2.37 16 7 C -0.06 -0.84 4.69 -29.03 -0.14 -0.97 16 8 C 0.52 8.37 6.81 -10.99 -0.07 8.29 16 9 O -0.52 -9.98 14.55 5.55 0.08 -9.90 16 10 N -0.60 -8.76 1.72 -172.89 -0.30 -9.05 16 11 C 0.11 1.50 5.12 -4.06 -0.02 1.48 16 12 C -0.13 -1.72 5.56 -26.29 -0.15 -1.86 16 13 C -0.13 -1.77 5.44 -26.45 -0.14 -1.91 16 14 C -0.11 -1.51 5.67 -26.94 -0.15 -1.66 16 15 C -0.14 -2.01 5.24 -26.74 -0.14 -2.15 16 16 C 0.16 2.70 2.40 -67.35 -0.16 2.53 16 17 H 0.06 1.12 5.39 -51.93 -0.28 0.84 16 18 N -0.72 -15.84 5.09 -52.87 -0.27 -16.10 16 19 C -0.25 -6.09 9.94 -15.06 -0.15 -6.24 16 20 H 0.07 1.58 7.83 -52.49 -0.41 1.17 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.93 -26.16 13.06 55.49 0.72 -25.43 16 23 Si 0.90 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.08 1.22 5.38 -3.38 -0.02 1.20 16 28 N -0.56 -7.07 6.15 -6.54 -0.04 -7.11 16 29 H 0.42 4.17 8.96 -40.82 -0.37 3.80 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.11 1.44 7.98 -51.93 -0.41 1.03 16 37 H 0.12 1.59 7.64 -51.93 -0.40 1.19 16 38 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 39 H 0.09 1.05 5.06 -51.93 -0.26 0.79 16 40 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 41 H 0.07 1.00 7.39 -51.93 -0.38 0.62 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.22 3.69 -51.93 -0.19 1.03 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.65 7.85 -51.93 -0.41 0.25 16 46 H 0.07 1.10 7.60 -51.93 -0.39 0.70 16 47 H 0.06 0.84 4.49 -51.93 -0.23 0.61 16 48 H 0.39 9.23 7.52 -40.82 -0.31 8.92 16 49 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.09 1.37 6.08 -51.93 -0.32 1.05 16 51 H 0.07 1.05 7.97 -51.93 -0.41 0.63 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -31.74 390.12 -10.07 -41.81 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -8.12 Total: 14.10 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.88 Total: -1.97 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.00 Total: -65.68 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.74 -10.07 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088329310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.039 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds