Wall clock time and date at job start Sat Apr 11 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46984 * 2 1 4 4 C 1.34664 * 126.59425 * 275.04083 * 3 2 1 5 5 N 1.34133 * 108.02280 * 179.74683 * 4 3 2 6 6 C 1.30501 * 109.25134 * 0.37023 * 5 4 3 7 7 C 1.50703 * 125.64640 * 179.89538 * 6 5 4 8 8 C 1.50701 * 109.47064 * 304.68963 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63059 * 359.72315 * 10 8 7 12 12 C 1.52760 * 109.00903 * 233.58159 * 11 10 8 13 13 C 1.53040 * 109.38219 * 305.58856 * 12 11 10 14 14 C 1.52995 * 109.44989 * 181.25300 * 13 12 11 15 15 H 1.09003 * 109.47346 * 184.94149 * 14 13 12 16 16 C 1.53006 * 109.46983 * 304.93844 * 14 13 12 17 17 N 1.46501 * 109.47313 * 64.93931 * 14 13 12 18 18 C 1.36937 * 120.00074 * 154.99882 * 17 14 13 19 19 H 1.07997 * 119.99845 * 0.02562 * 18 17 14 20 20 C 1.38808 * 119.99749 * 179.97438 * 18 17 14 21 21 N 1.31624 * 120.00342 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46961 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47113 * 120.00183 * 22 20 18 25 25 H 1.48499 * 109.47426 * 240.00474 * 22 20 18 26 26 C 1.53042 * 109.53627 * 61.23932 * 13 12 11 27 27 C 1.46926 * 120.62707 * 180.02562 * 10 8 7 28 28 N 1.35041 * 108.70224 * 359.62971 * 6 5 4 29 29 H 0.96999 * 126.39637 * 180.25040 * 28 6 5 30 30 H 1.09005 * 109.47399 * 299.99757 * 1 2 3 31 31 H 1.08998 * 109.47034 * 59.99734 * 1 2 3 32 32 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46722 * 240.00226 * 2 1 3 34 34 H 1.08998 * 109.47034 * 120.00265 * 2 1 3 35 35 H 1.08002 * 125.99125 * 359.97438 * 4 3 2 36 36 H 1.09002 * 109.47152 * 184.69056 * 7 6 5 37 37 H 1.09001 * 109.46980 * 64.69156 * 7 6 5 38 38 H 1.08996 * 109.58649 * 353.41979 * 11 10 8 39 39 H 1.09004 * 109.58204 * 113.84425 * 11 10 8 40 40 H 1.09000 * 109.56394 * 185.56047 * 12 11 10 41 41 H 1.09001 * 109.38512 * 65.51568 * 12 11 10 42 42 H 1.09001 * 109.46468 * 301.22386 * 13 12 11 43 43 H 1.08995 * 109.46721 * 60.00283 * 16 14 13 44 44 H 1.09002 * 109.46913 * 179.97438 * 16 14 13 45 45 H 1.08990 * 109.47337 * 299.99681 * 16 14 13 46 46 H 0.97001 * 119.99610 * 334.99892 * 17 14 13 47 47 H 0.96998 * 119.99981 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.49904 * 178.67973 * 26 13 12 49 49 H 1.09000 * 109.52420 * 58.60476 * 26 13 12 50 50 H 1.09005 * 109.58410 * 246.15856 * 27 10 8 51 51 H 1.09001 * 109.58875 * 6.43498 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2103 2.2094 -1.0770 5 7 2.6642 3.3975 -0.6510 6 6 2.7817 3.3724 0.6485 7 6 3.2633 4.5121 1.5090 8 6 4.6179 4.9660 1.0293 9 8 5.1405 4.4183 0.0818 10 7 5.2481 5.9812 1.6528 11 6 4.6246 6.6591 2.7974 12 6 4.5904 8.1623 2.5272 13 6 6.0030 8.6516 2.1997 14 6 5.9758 10.1624 1.9594 15 1 6.9629 10.4974 1.6406 16 6 4.9508 10.4873 0.8709 17 7 5.6047 10.8476 3.2000 18 6 5.9908 12.1449 3.4075 19 1 6.5686 12.6630 2.6565 20 6 5.6386 12.7942 4.5827 21 7 4.9340 12.1629 5.4978 22 14 6.1647 14.5641 4.8657 23 1 6.9414 15.0430 3.6941 24 1 4.9613 15.4159 5.0428 25 1 7.0092 14.6407 6.0848 26 6 6.5106 7.9443 0.9411 27 6 6.5688 6.4354 1.1964 28 7 2.3946 2.1581 1.0949 29 1 2.3764 1.8635 2.0189 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0176 1.9347 -2.1036 36 1 3.3371 4.1795 2.5444 37 1 2.5580 5.3405 1.4428 38 1 3.6077 6.2901 2.9311 39 1 5.2071 6.4657 3.6982 40 1 4.2205 8.6835 3.4102 41 1 3.9308 8.3632 1.6830 42 1 6.6674 8.4286 3.0345 43 1 3.9638 10.1524 1.1897 44 1 4.9312 11.5637 0.7001 45 1 5.2270 9.9777 -0.0520 46 1 5.0854 10.3823 3.8743 47 1 4.6882 12.6165 6.3192 48 1 7.5074 8.3104 0.6949 49 1 5.8336 8.1468 0.1112 50 1 7.3133 6.2233 1.9638 51 1 6.8354 5.9168 0.2755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317687607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:48 Heat of formation + Delta-G solvation = 19.324758 kcal Electronic energy + Delta-G solvation = -28867.314963 eV Core-core repulsion = 24995.250970 eV Total energy + Delta-G solvation = -3872.063993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.32835 -40.14760 -37.98393 -35.37165 -34.52360 -33.06884 -32.62899 -31.91932 -30.65953 -30.49672 -28.22668 -27.28299 -25.24862 -23.91760 -23.56630 -23.14988 -21.82387 -21.16717 -20.69183 -19.46180 -18.42993 -17.70156 -17.27907 -16.92862 -15.85908 -15.66137 -15.16328 -14.88726 -14.79504 -14.52504 -14.35977 -13.95682 -13.87065 -13.74422 -13.63716 -13.34290 -13.24381 -12.85370 -12.66715 -12.64623 -12.36260 -12.11974 -11.99619 -11.86028 -11.60447 -11.56896 -11.33559 -11.03229 -10.86352 -10.57372 -10.30266 -10.23980 -10.14050 -10.09127 -9.99073 -9.81342 -9.64915 -9.54084 -8.90858 -8.56553 -8.40435 -6.94365 -5.77168 -3.04468 1.76834 2.59286 2.68345 2.95954 3.21659 3.42671 3.49042 3.50628 4.09417 4.43996 4.49061 4.55852 4.58817 4.68938 4.86021 4.87448 5.06445 5.09447 5.14766 5.16787 5.21888 5.23664 5.34945 5.41516 5.43101 5.50338 5.56173 5.57713 5.66487 5.74905 5.84115 5.85455 6.00080 6.01630 6.05742 6.14812 6.23988 6.30690 6.34132 6.49425 6.58610 6.60464 6.70351 6.77721 6.95486 7.12029 7.17985 7.41220 7.71733 7.98528 8.19207 8.42611 9.53798 10.12474 10.47053 11.45876 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002001 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.072882 B =13990.630505 C =14455.159959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.026 4.026 4 C -0.021 4.021 5 N -0.457 5.457 6 C 0.221 3.779 7 C -0.055 4.055 8 C 0.520 3.480 9 O -0.522 6.522 10 N -0.609 5.609 11 C 0.105 3.895 12 C -0.130 4.130 13 C -0.090 4.090 14 C 0.177 3.823 15 H 0.046 0.954 16 C -0.167 4.167 17 N -0.724 5.724 18 C -0.233 4.233 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.128 4.128 27 C 0.115 3.885 28 N -0.563 5.563 29 H 0.415 0.585 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.167 0.833 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.383 0.617 47 H 0.253 0.747 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -24.418 -7.112 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.170 4.170 5 N -0.175 5.175 6 C -0.043 4.043 7 C -0.096 4.096 8 C 0.306 3.694 9 O -0.397 6.397 10 N -0.343 5.343 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.109 4.109 14 C 0.068 3.932 15 H 0.064 0.936 16 C -0.227 4.227 17 N -0.366 5.366 18 C -0.365 4.365 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.167 4.167 27 C -0.007 4.007 28 N -0.167 5.167 29 H 0.252 0.748 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.217 0.783 47 H 0.063 0.937 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.925 -23.852 -8.190 25.905 hybrid contribution -0.194 0.222 1.547 1.575 sum -6.119 -23.630 -6.643 25.297 Atomic orbital electron populations 1.21781 0.94431 1.01870 1.02474 1.19970 0.96006 0.89127 1.03354 1.21213 1.09230 0.96381 0.87305 1.22111 1.05858 0.90393 0.98596 1.70256 1.16455 1.22998 1.07820 1.22257 1.04158 0.86764 0.91160 1.19984 0.96392 0.95358 0.97912 1.20027 0.86340 0.80041 0.82989 1.90745 1.66675 1.55411 1.26860 1.48105 1.19848 1.33695 1.32686 1.21796 0.97948 0.93922 0.88121 1.21935 0.98313 0.93337 1.03229 1.21389 0.96028 0.96387 0.97089 1.20207 0.95993 0.89083 0.87956 0.93638 1.22527 1.00669 1.01081 0.98390 1.42464 1.65046 1.12165 1.16940 1.19302 1.27230 0.88947 1.00973 0.91228 1.24708 1.01106 0.98292 0.97034 1.69658 1.43305 1.36444 1.08989 0.86149 0.77671 0.85027 0.77562 1.20615 1.21983 1.21970 1.21989 1.02092 0.93666 0.98904 1.21598 0.83173 0.95241 1.00723 1.43076 1.51614 1.12415 1.09604 0.74758 0.92892 0.92005 0.92079 0.89458 0.91371 0.81574 0.87639 0.86155 0.90235 0.91084 0.89653 0.91189 0.90999 0.93260 0.93201 0.94408 0.78298 0.93678 0.90822 0.91213 0.91721 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.05 -0.26 6.49 -27.88 -0.18 -0.44 16 3 C -0.03 -0.24 6.49 -81.60 -0.53 -0.77 16 4 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 5 N -0.46 -6.68 10.60 -10.81 -0.11 -6.79 16 6 C 0.22 2.59 6.95 -155.41 -1.08 1.51 16 7 C -0.05 -0.53 4.68 -29.03 -0.14 -0.66 16 8 C 0.52 6.86 7.69 -10.98 -0.08 6.77 16 9 O -0.52 -9.03 14.97 5.56 0.08 -8.94 16 10 N -0.61 -7.34 2.98 -173.06 -0.52 -7.86 16 11 C 0.10 1.11 6.31 -3.94 -0.02 1.09 16 12 C -0.13 -1.76 4.70 -26.83 -0.13 -1.89 16 13 C -0.09 -1.35 2.08 -90.58 -0.19 -1.53 16 14 C 0.18 3.35 2.67 -67.93 -0.18 3.16 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 C -0.17 -2.96 8.76 37.16 0.33 -2.63 16 17 N -0.72 -17.26 5.06 -53.42 -0.27 -17.53 16 18 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 22 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C -0.13 -1.67 5.08 -26.63 -0.14 -1.81 16 27 C 0.11 1.43 6.43 -3.73 -0.02 1.41 16 28 N -0.56 -4.95 6.15 -6.54 -0.04 -4.99 16 29 H 0.41 2.21 8.96 -40.82 -0.37 1.84 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.11 0.64 7.95 -51.93 -0.41 0.23 16 37 H 0.12 1.02 7.68 -51.93 -0.40 0.62 16 38 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.31 6.74 -51.93 -0.35 0.96 16 41 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.87 6.38 -51.93 -0.33 0.54 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.58 6.60 -51.93 -0.34 0.24 16 46 H 0.38 9.51 6.35 -40.82 -0.26 9.25 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 49 H 0.07 0.97 6.64 -51.93 -0.34 0.62 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -35.32 399.49 -10.02 -45.33 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.43 Total: 8.02 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.45 Total: -3.64 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.22 Total: -63.95 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.32 -10.02 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317687607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.659 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds