Wall clock time and date at job start Sat Apr 11 2020 04:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47129 * 2 1 4 4 N 1.30448 * 125.98338 * 269.95979 * 3 2 1 5 5 N 1.39942 * 108.89188 * 180.02562 * 4 3 2 6 6 C 1.46501 * 125.75019 * 180.02562 * 5 4 3 7 7 C 1.34256 * 108.49002 * 359.74690 * 5 4 3 8 8 C 1.38037 * 107.42054 * 0.40068 * 7 5 4 9 9 C 1.47430 * 126.41638 * 179.87253 * 8 7 5 10 10 O 1.21603 * 120.00081 * 179.68409 * 9 8 7 11 11 N 1.34777 * 119.99963 * 359.68488 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27989 * 11 9 8 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.52999 * 109.47257 * 84.72116 * 12 11 9 15 15 C 1.53003 * 109.47010 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 300.00125 * 15 14 12 17 17 H 1.08995 * 109.47275 * 299.99879 * 16 15 14 18 18 C 1.53003 * 109.47127 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46954 * 64.99859 * 18 16 15 20 20 C 1.36941 * 119.99520 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00568 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99540 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99817 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99900 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47288 * 90.00413 * 24 22 20 26 26 H 1.48508 * 109.46739 * 209.99768 * 24 22 20 27 27 H 1.48497 * 109.47333 * 329.99782 * 24 22 20 28 28 C 1.52999 * 109.47278 * 60.00039 * 16 15 14 29 29 C 1.52994 * 109.47024 * 299.99839 * 28 16 15 30 30 H 1.09009 * 109.47095 * 299.99600 * 1 2 3 31 31 H 1.08995 * 109.47180 * 59.99690 * 1 2 3 32 32 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47087 * 239.99715 * 2 1 3 34 34 H 1.09002 * 109.47085 * 119.99946 * 2 1 3 35 35 H 1.09001 * 109.47308 * 90.02252 * 6 5 4 36 36 H 1.09003 * 109.46948 * 210.02075 * 6 5 4 37 37 H 1.09001 * 109.47212 * 330.01621 * 6 5 4 38 38 H 1.08009 * 126.28934 * 180.24061 * 7 5 4 39 39 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.47245 * 299.99926 * 14 12 11 41 41 H 1.08995 * 109.47098 * 60.00065 * 14 12 11 42 42 H 1.08996 * 109.47077 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.47062 * 60.00488 * 15 14 12 44 44 H 1.08994 * 109.47230 * 184.99982 * 18 16 15 45 45 H 1.08998 * 109.47290 * 305.00179 * 18 16 15 46 46 H 0.96996 * 120.00039 * 0.02562 * 19 18 16 47 47 H 0.97001 * 120.00101 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.47245 * 179.97438 * 28 16 15 49 49 H 1.09003 * 109.46809 * 59.99699 * 28 16 15 50 50 H 1.08994 * 109.47599 * 300.00048 * 29 28 16 51 51 H 1.08998 * 109.47530 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1432 -1.0556 5 7 2.7347 3.4042 -0.6443 6 6 3.1241 4.5049 -1.5292 7 6 2.7398 3.4372 0.6979 8 6 2.3089 2.2037 1.1432 9 6 2.1591 1.7839 2.5485 10 8 1.7623 0.6645 2.8097 11 7 2.4619 2.6409 3.5437 12 6 2.3189 2.2217 4.9401 13 1 1.4584 1.5594 5.0343 14 6 3.5829 1.4816 5.3825 15 6 3.4337 1.0444 6.8411 16 6 3.2287 2.2766 7.7245 17 1 4.0893 2.9387 7.6299 18 6 3.0802 1.8394 9.1832 19 7 4.3343 1.2375 9.6426 20 6 4.4395 0.7695 10.9253 21 1 3.5979 0.8437 11.5980 22 6 5.6276 0.1986 11.3605 23 7 5.7290 -0.2507 12.5934 24 14 7.0831 0.0695 10.1966 25 1 7.9181 1.2922 10.3106 26 1 7.8971 -1.1206 10.5522 27 1 6.5913 -0.0659 8.8020 28 6 1.9647 3.0167 7.2821 29 6 2.1139 3.4539 5.8236 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2520 5.1209 -1.7483 36 1 3.8847 5.1131 -1.0394 37 1 3.5256 4.0997 -2.4580 38 1 3.0303 4.2741 1.3157 39 1 2.7788 3.5337 3.3353 40 1 3.7292 0.6040 4.7529 41 1 4.4434 2.1439 5.2883 42 1 4.3339 0.5167 7.1561 43 1 2.5731 0.3821 6.9357 44 1 2.8459 2.7067 9.8003 45 1 2.2756 1.1085 9.2633 46 1 5.0903 1.1711 9.0385 47 1 6.5591 -0.6500 12.8975 48 1 1.8184 3.8943 7.9117 49 1 1.1041 2.3544 7.3767 50 1 2.9745 4.1160 5.7289 51 1 1.2133 3.9808 5.5082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484568921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:09:39 Heat of formation + Delta-G solvation = 26.564208 kcal Electronic energy + Delta-G solvation = -28741.903319 eV Core-core repulsion = 24870.153252 eV Total energy + Delta-G solvation = -3871.750067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.81857 -39.81945 -38.18083 -35.44506 -34.88387 -33.71352 -32.20228 -31.54922 -30.81233 -30.59540 -29.17071 -27.31669 -25.33464 -23.99258 -22.86981 -22.81081 -22.00862 -20.86658 -20.42712 -19.97793 -19.54098 -17.98522 -17.53350 -16.38484 -16.14701 -16.13037 -15.08439 -15.04443 -14.62865 -14.53649 -14.34250 -14.23972 -14.11119 -13.94781 -13.46645 -13.35187 -13.29519 -13.11913 -12.86457 -12.46700 -12.32785 -12.26803 -12.09115 -11.97072 -11.72209 -11.40471 -11.25547 -11.07830 -11.01811 -11.00099 -10.78452 -10.34764 -10.17735 -10.08841 -10.03014 -9.78067 -9.72695 -9.52326 -9.18035 -8.91518 -8.83947 -7.16400 -5.72239 -3.06701 1.11424 1.86748 1.90806 3.07752 3.29294 3.40443 3.43189 3.48232 3.90324 4.12426 4.43893 4.55867 4.63268 4.63514 4.76210 4.79447 4.83649 4.93152 5.00557 5.06362 5.20337 5.24533 5.25826 5.30920 5.39741 5.46376 5.52970 5.59051 5.60334 5.63707 5.77165 5.85204 5.91009 5.95157 6.02143 6.03736 6.10838 6.18678 6.22584 6.23442 6.34587 6.36452 6.47098 6.52441 6.63026 6.78654 6.90664 7.19135 7.44102 8.05248 8.18884 8.47296 9.27107 9.99667 10.20114 11.46452 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002141 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.909190 B =13075.012801 C =13130.418758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C 0.137 3.863 4 N -0.301 5.301 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.097 3.903 8 C -0.285 4.285 9 C 0.593 3.407 10 O -0.535 6.535 11 N -0.726 5.726 12 C 0.148 3.852 13 H 0.090 0.910 14 C -0.127 4.127 15 C -0.109 4.109 16 C -0.099 4.099 17 H 0.068 0.932 18 C 0.161 3.839 19 N -0.756 5.756 20 C -0.241 4.241 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.107 4.107 29 C -0.122 4.122 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.182 0.818 39 H 0.393 0.607 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 12.688 -30.918 34.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.030 4.030 4 N -0.122 5.122 5 N -0.140 5.140 6 C -0.044 4.044 7 C -0.055 4.055 8 C -0.300 4.300 9 C 0.380 3.620 10 O -0.413 6.413 11 N -0.377 5.377 12 C 0.044 3.956 13 H 0.108 0.892 14 C -0.166 4.166 15 C -0.147 4.147 16 C -0.117 4.117 17 H 0.087 0.913 18 C 0.034 3.966 19 N -0.401 5.401 20 C -0.371 4.371 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.584 5.584 24 Si 0.714 3.286 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.145 4.145 29 C -0.161 4.161 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.199 0.801 39 H 0.226 0.774 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.707 11.992 -31.885 35.161 hybrid contribution 1.492 0.593 0.024 1.606 sum -7.216 12.586 -31.862 35.009 Atomic orbital electron populations 1.21610 0.93928 1.02175 1.01865 1.20140 0.96554 0.87941 1.04204 1.22497 0.94935 0.96917 0.88674 1.77219 1.21996 0.90372 1.22656 1.48317 1.49357 1.11614 1.04739 1.21999 1.01472 0.86159 0.94814 1.23067 0.98246 0.98785 0.85354 1.20316 1.19642 0.95375 0.94692 1.17226 0.76747 0.84630 0.83375 1.90763 1.46536 1.19861 1.84107 1.45967 1.68816 1.16600 1.06289 1.21049 0.99326 0.96500 0.78720 0.89211 1.21933 0.97050 1.00281 0.97324 1.21517 1.02959 0.97646 0.92594 1.21404 0.97598 0.96684 0.96060 0.91323 1.20665 0.89479 0.95703 0.90761 1.42739 1.11212 1.73783 1.12403 1.19084 0.99224 1.31399 0.87360 0.89276 1.24677 0.97625 1.00925 0.96153 1.69704 1.26632 1.46293 1.15794 0.86549 0.83726 0.77382 0.80905 1.21191 1.21780 1.20271 1.21450 0.98459 1.00439 0.94159 1.21787 1.01850 0.96690 0.95725 0.92176 0.93101 0.91790 0.90683 0.87942 0.90211 0.89016 0.88811 0.80120 0.77395 0.91659 0.92200 0.91169 0.91644 0.95649 0.95550 0.80677 0.93142 0.91331 0.91495 0.91611 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.92 16 2 C -0.05 -0.51 5.97 -27.88 -0.17 -0.67 16 3 C 0.14 1.53 6.52 -82.02 -0.53 1.00 16 4 N -0.30 -3.24 12.50 33.90 0.42 -2.81 16 5 N -0.36 -2.72 3.98 -67.60 -0.27 -2.99 16 6 C 0.10 0.28 11.44 59.85 0.68 0.96 16 7 C 0.10 0.67 10.99 -16.57 -0.18 0.49 16 8 C -0.29 -2.92 6.13 -105.07 -0.64 -3.57 16 9 C 0.59 6.94 7.78 -12.52 -0.10 6.84 16 10 O -0.54 -8.08 14.58 5.27 0.08 -8.01 16 11 N -0.73 -6.71 5.07 -54.88 -0.28 -6.99 16 12 C 0.15 1.60 2.45 -67.93 -0.17 1.44 16 13 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 14 C -0.13 -1.61 5.49 -26.73 -0.15 -1.76 16 15 C -0.11 -1.63 5.08 -26.73 -0.14 -1.77 16 16 C -0.10 -1.45 2.22 -90.62 -0.20 -1.65 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 19 N -0.76 -18.18 5.13 -59.91 -0.31 -18.49 16 20 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 22 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 23 N -0.94 -29.88 13.97 55.49 0.78 -29.10 16 24 Si 0.88 22.49 27.74 -169.99 -4.71 17.78 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 28 C -0.11 -1.22 5.20 -26.73 -0.14 -1.36 16 29 C -0.12 -1.13 5.39 -26.73 -0.14 -1.27 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.20 6.56 -51.93 -0.34 0.85 16 35 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.18 0.46 7.46 -52.48 -0.39 0.07 16 39 H 0.39 2.37 7.52 -40.82 -0.31 2.07 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.36 8.45 4.71 -40.82 -0.19 8.26 16 47 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -36.72 405.68 -8.74 -45.46 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.78 Total: 5.35 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.78 Total: -6.30 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.34 Total: -60.38 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -8.01 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.72 -8.74 -45.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484568921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.020 kcal (2) G-P(sol) polarization free energy of solvation -36.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds