Wall clock time and date at job start Sat Apr 11 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47452 * 2 1 4 4 C 1.53007 * 109.46516 * 119.99775 * 2 1 3 5 5 C 1.53000 * 109.46585 * 174.99893 * 4 2 1 6 6 N 1.46507 * 109.47031 * 179.61975 * 5 4 2 7 7 C 1.46502 * 119.99379 * 263.91048 * 6 5 4 8 8 C 1.50702 * 109.47039 * 84.01613 * 7 6 5 9 9 H 1.07990 * 120.00066 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99427 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00471 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99462 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47440 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47120 * 120.00381 * 12 10 8 15 15 H 1.48503 * 109.46882 * 239.99843 * 12 10 8 16 16 C 1.34771 * 120.00365 * 84.18127 * 6 5 4 17 17 O 1.21287 * 119.99930 * 4.64350 * 16 6 5 18 18 C 1.50697 * 119.99912 * 184.64624 * 16 6 5 19 19 H 1.08996 * 107.88535 * 41.72090 * 18 16 6 20 20 C 1.50950 * 108.02845 * 285.16471 * 18 16 6 21 21 C 1.53668 * 110.96460 * 165.70734 * 20 18 16 22 22 C 1.51884 * 106.90341 * 79.09859 * 21 20 18 23 23 N 1.29892 * 127.81561 * 114.87949 * 22 21 20 24 24 N 1.29031 * 109.22260 * 180.27128 * 23 22 21 25 25 C 1.30959 * 109.71021 * 359.92789 * 24 23 22 26 26 N 1.34593 * 124.56659 * 294.93157 * 22 21 20 27 27 C 1.47507 * 125.04181 * 359.45914 * 26 22 21 28 28 C 1.50870 * 108.02619 * 158.23662 * 18 16 6 29 29 H 1.09002 * 109.47095 * 300.00971 * 1 2 3 30 30 H 1.09002 * 109.46827 * 59.99921 * 1 2 3 31 31 H 1.08988 * 109.47709 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46784 * 239.99149 * 2 1 3 33 33 H 1.09007 * 109.47492 * 59.99830 * 3 2 1 34 34 H 1.09002 * 109.47154 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47169 * 299.99870 * 3 2 1 36 36 H 1.09003 * 109.46809 * 55.00163 * 4 2 1 37 37 H 1.08994 * 109.47353 * 294.99434 * 4 2 1 38 38 H 1.08992 * 109.47581 * 59.61548 * 5 4 2 39 39 H 1.09000 * 109.47037 * 299.61188 * 5 4 2 40 40 H 1.08998 * 109.46583 * 204.01438 * 7 6 5 41 41 H 1.08996 * 109.46955 * 324.01592 * 7 6 5 42 42 H 0.96998 * 120.00265 * 180.02562 * 11 10 8 43 43 H 1.09007 * 109.18302 * 286.09053 * 20 18 16 44 44 H 1.09002 * 109.18042 * 45.32465 * 20 18 16 45 45 H 1.08997 * 109.97279 * 198.45112 * 21 20 18 46 46 H 1.09005 * 109.96779 * 319.75261 * 21 20 18 47 47 H 1.08001 * 126.61283 * 179.89515 * 25 24 23 48 48 H 1.08998 * 109.93445 * 185.37746 * 27 26 22 49 49 H 1.09004 * 109.92377 * 306.50096 * 27 26 22 50 50 H 1.08992 * 109.14660 * 314.84688 * 28 18 16 51 51 H 1.08994 * 109.14546 * 74.00292 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5647 -0.8311 1.1881 6 7 4.0538 -1.5136 2.3887 7 6 4.5284 -0.7322 3.5334 8 6 3.3545 -0.3314 4.3893 9 1 2.3550 -0.6286 4.1085 10 6 3.5568 0.4148 5.5309 11 7 4.7740 0.7764 5.8732 12 14 2.1019 0.9110 6.5923 13 1 0.8496 0.3828 5.9939 14 1 2.2723 0.3532 7.9579 15 1 2.0271 2.3922 6.6685 16 6 4.0722 -2.8603 2.4379 17 8 3.7640 -3.5072 1.4594 18 6 4.4758 -3.5623 3.7089 19 1 4.0148 -3.0346 4.5437 20 6 5.9739 -3.4449 3.8519 21 6 6.4212 -3.8162 5.2744 22 6 6.4333 -5.3330 5.3518 23 7 7.4574 -6.1136 5.5224 24 7 7.0599 -7.3411 5.5268 25 6 5.7617 -7.3856 5.3598 26 7 5.3402 -6.1116 5.2492 27 6 3.9635 -5.6178 5.0578 28 6 3.9087 -4.9599 3.6706 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6052 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9991 0.1671 1.1353 39 1 3.8528 -1.4000 0.3041 40 1 5.2192 -1.3346 4.1231 41 1 5.0395 0.1618 3.1761 42 1 4.9163 1.3011 6.6765 43 1 6.4554 -4.1144 3.1390 44 1 6.2748 -2.4193 3.6382 45 1 7.4210 -3.4258 5.4642 46 1 5.7183 -3.4120 6.0030 47 1 5.1476 -8.2731 5.3189 48 1 3.2607 -6.4497 5.1026 49 1 3.7213 -4.8852 5.8277 50 1 2.8723 -4.9161 3.3364 51 1 4.4852 -5.5604 2.9670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879110319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:34 Heat of formation + Delta-G solvation = 20.756591 kcal Electronic energy + Delta-G solvation = -30611.996225 eV Core-core repulsion = 26739.994321 eV Total energy + Delta-G solvation = -3872.001904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.15803 -39.86732 -37.12010 -36.23337 -34.94171 -34.01474 -32.65008 -31.92221 -29.95847 -29.07685 -27.29921 -26.99009 -26.57311 -24.29093 -23.34435 -23.00802 -22.29147 -20.80131 -20.11414 -19.68280 -18.41787 -17.51200 -16.77174 -16.49827 -15.84310 -15.57988 -15.05614 -14.97788 -14.71593 -14.62108 -14.30654 -14.05805 -13.86898 -13.52192 -13.06986 -12.81010 -12.68374 -12.42748 -12.31938 -12.28805 -12.03346 -11.86506 -11.75453 -11.59250 -11.37783 -11.24620 -11.18894 -11.04653 -10.91285 -10.69993 -10.60314 -10.56942 -10.43231 -10.31073 -10.20683 -10.05897 -9.94271 -9.66396 -9.16403 -8.94230 -8.63182 -7.80684 -6.29258 -4.36262 2.00661 2.59442 3.02191 3.11510 3.20604 3.22487 3.27412 3.75560 4.21968 4.33318 4.53133 4.58414 4.69139 4.85525 5.02583 5.08141 5.10141 5.11897 5.15979 5.19473 5.22415 5.41561 5.55352 5.59925 5.73130 5.74086 5.77138 5.86811 5.91762 5.93770 5.96269 6.03105 6.03760 6.10691 6.13164 6.20344 6.23603 6.26542 6.32420 6.38019 6.40323 6.43434 6.65189 6.69106 6.85198 6.96732 7.08468 7.43607 7.65200 7.94014 8.24531 8.67704 8.86979 8.88512 9.31773 10.77128 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.004115 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.081457 B = 6803.418414 C = 8392.596698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.127 4.127 5 C 0.124 3.876 6 N -0.593 5.593 7 C 0.225 3.775 8 C -0.536 4.536 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.888 5.888 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.518 3.482 17 O -0.575 6.575 18 C -0.111 4.111 19 H 0.111 0.889 20 C -0.110 4.110 21 C -0.030 4.030 22 C 0.187 3.813 23 N -0.302 5.302 24 N -0.309 5.309 25 C 0.141 3.859 26 N -0.467 5.467 27 C 0.104 3.896 28 C -0.112 4.112 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.215 0.785 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -5.662 -4.113 8.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.165 4.165 5 C 0.001 3.999 6 N -0.322 5.322 7 C 0.105 3.895 8 C -0.574 4.574 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.305 3.695 17 O -0.456 6.456 18 C -0.132 4.132 19 H 0.129 0.871 20 C -0.148 4.148 21 C -0.069 4.069 22 C -0.081 4.081 23 N -0.142 5.142 24 N -0.148 5.148 25 C -0.147 4.147 26 N -0.157 5.157 27 C -0.018 4.018 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.115 0.885 47 H 0.231 0.769 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.110 0.890 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.432 -6.330 -4.265 8.369 hybrid contribution -2.301 0.807 0.587 2.508 sum -5.733 -5.523 -3.678 8.769 Atomic orbital electron populations 1.21812 0.95691 1.01354 1.01314 1.21053 0.95378 0.96319 0.98514 1.21885 1.01286 0.95986 1.01340 1.22006 0.95994 1.00491 0.98040 1.21315 0.93988 0.96905 0.87670 1.48245 1.61145 1.05316 1.17464 1.19735 0.95615 0.91533 0.82621 1.21507 0.93807 1.34327 1.07776 0.91881 1.24912 0.95729 0.95541 0.97441 1.69908 1.19939 1.37319 1.25420 0.86565 0.82783 0.78584 0.80315 1.19716 1.20869 1.20848 1.20395 0.77381 0.82609 0.89073 1.90599 1.51622 1.65973 1.37399 1.20619 0.97440 0.96051 0.99086 0.87105 1.21375 0.93525 1.04032 0.95878 1.20584 1.05003 0.83076 0.98277 1.25032 0.83036 0.97530 1.02524 1.74212 1.24249 0.96099 1.19613 1.74467 1.08332 1.13181 1.18855 1.26232 0.94410 0.88313 1.05739 1.46349 1.10007 1.06895 1.52486 1.22568 0.78924 1.00684 0.99643 1.21429 1.03434 0.95505 0.94641 0.92692 0.93219 0.93024 0.91736 0.92386 0.92421 0.93436 0.92425 0.90348 0.90778 0.91859 0.93007 0.94866 0.92496 0.91706 0.88368 0.87654 0.88517 0.76867 0.87880 0.88012 0.89008 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.15 -1.86 8.95 37.15 0.33 -1.53 16 4 C -0.13 -2.05 4.96 -26.73 -0.13 -2.19 16 5 C 0.12 2.13 5.19 -4.04 -0.02 2.11 16 6 N -0.59 -11.09 2.47 -175.06 -0.43 -11.53 16 7 C 0.22 4.67 4.48 -5.19 -0.02 4.64 16 8 C -0.54 -12.26 8.81 -34.44 -0.30 -12.56 16 9 H 0.06 1.48 6.84 -52.49 -0.36 1.12 16 10 C 0.07 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.89 -22.30 13.29 55.43 0.74 -21.56 16 12 Si 0.89 18.95 29.54 -169.99 -5.02 13.93 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.52 9.47 6.56 -10.99 -0.07 9.40 16 17 O -0.57 -11.71 15.65 5.55 0.09 -11.62 16 18 C -0.11 -1.69 1.29 -93.87 -0.12 -1.81 16 19 H 0.11 1.80 6.62 -51.93 -0.34 1.45 16 20 C -0.11 -1.63 4.29 -27.41 -0.12 -1.74 16 21 C -0.03 -0.42 6.02 -26.95 -0.16 -0.58 16 22 C 0.19 2.83 7.03 -155.75 -1.09 1.74 16 23 N -0.30 -5.32 12.23 32.84 0.40 -4.92 16 24 N -0.31 -5.12 12.24 29.59 0.36 -4.76 16 25 C 0.14 1.78 12.83 -90.36 -1.16 0.62 16 26 N -0.47 -5.95 2.72 -114.24 -0.31 -6.26 16 27 C 0.10 1.06 6.52 -3.16 -0.02 1.03 16 28 C -0.11 -1.43 4.36 -27.47 -0.12 -1.55 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.61 8.14 -51.94 -0.42 0.19 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.42 6.87 -51.93 -0.36 1.06 16 38 H 0.07 1.23 6.29 -51.93 -0.33 0.90 16 39 H 0.06 1.09 7.54 -51.93 -0.39 0.70 16 40 H 0.05 1.06 4.26 -51.93 -0.22 0.84 16 41 H 0.03 0.75 7.95 -51.93 -0.41 0.34 16 42 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 43 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 44 H 0.10 1.56 5.64 -51.93 -0.29 1.27 16 45 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.10 1.32 7.89 -51.93 -0.41 0.91 16 47 H 0.21 1.67 8.06 -52.49 -0.42 1.24 16 48 H 0.10 0.72 8.13 -51.93 -0.42 0.30 16 49 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 50 H 0.09 1.18 7.82 -51.93 -0.41 0.77 16 51 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -29.39 396.10 -9.71 -39.09 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.46 Total: 5.49 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.03 Total: -3.83 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.76 Total: -49.03 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.39 -9.71 -39.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879110319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.850 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds