Wall clock time and date at job start Sat Apr 11 2020 04:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46836 * 2 1 4 4 C 1.52998 * 109.47172 * 240.00093 * 2 1 3 5 5 C 1.52996 * 109.47074 * 119.99863 * 2 1 3 6 6 H 1.09000 * 109.47521 * 180.02562 * 5 2 1 7 7 C 1.53003 * 109.47332 * 300.00473 * 5 2 1 8 8 N 1.46501 * 109.47349 * 175.00381 * 7 5 2 9 9 C 1.36932 * 120.00046 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00423 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00205 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99539 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00443 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47099 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47482 * 119.99680 * 13 11 9 16 16 H 1.48502 * 109.47297 * 240.00406 * 13 11 9 17 17 N 1.46505 * 109.47130 * 60.00220 * 5 2 1 18 18 C 1.34773 * 120.00095 * 85.00161 * 17 5 2 19 19 O 1.21613 * 119.99881 * 359.97438 * 18 17 5 20 20 C 1.47404 * 120.00190 * 179.72673 * 18 17 5 21 21 N 1.31873 * 125.93395 * 359.95865 * 20 18 17 22 22 C 1.33371 * 109.15307 * 179.80077 * 21 20 18 23 23 C 1.34874 * 108.15892 * 0.42190 * 22 21 20 24 24 N 1.35672 * 107.37174 * 359.79571 * 23 22 21 25 25 C 1.46444 * 124.57538 * 179.87613 * 24 23 22 26 26 C 1.53281 * 108.75438 * 342.80138 * 25 24 23 27 27 C 1.53145 * 109.60386 * 50.51374 * 26 25 24 28 28 C 1.50767 * 128.32252 * 179.84373 * 23 22 21 29 29 H 1.08998 * 109.47308 * 300.00080 * 1 2 3 30 30 H 1.08992 * 109.47225 * 60.00399 * 1 2 3 31 31 H 1.09003 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46863 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47323 * 300.00091 * 3 2 1 34 34 H 1.08998 * 109.47238 * 59.99877 * 3 2 1 35 35 H 1.09003 * 109.47086 * 299.99896 * 4 2 1 36 36 H 1.08994 * 109.46999 * 59.99901 * 4 2 1 37 37 H 1.09000 * 109.46698 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.46589 * 294.99705 * 7 5 2 39 39 H 1.09000 * 109.47433 * 54.99587 * 7 5 2 40 40 H 0.97000 * 120.00018 * 359.97438 * 8 7 5 41 41 H 0.97000 * 119.99224 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 17 5 2 43 43 H 1.08003 * 125.92365 * 180.16665 * 22 21 20 44 44 H 1.09000 * 109.58771 * 102.60453 * 25 24 23 45 45 H 1.09000 * 109.58676 * 223.03579 * 25 24 23 46 46 H 1.08995 * 109.45391 * 290.46963 * 26 25 24 47 47 H 1.09002 * 109.44655 * 170.54859 * 26 25 24 48 48 H 1.08999 * 109.50477 * 170.59417 * 27 26 25 49 49 H 1.08998 * 109.51162 * 50.45275 * 27 26 25 50 50 H 1.09000 * 109.73094 * 283.84389 * 28 23 22 51 51 H 1.09000 * 109.73020 * 44.53046 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7208 1.2495 7 6 1.5299 0.0000 2.4985 8 7 1.9176 -0.7566 3.6917 9 6 1.5689 -0.3004 4.9348 10 1 1.0085 0.6173 5.0358 11 6 1.9357 -1.0175 6.0654 12 7 2.6192 -2.1357 5.9423 13 14 1.4607 -0.3950 7.7613 14 1 0.7015 0.8743 7.6279 15 1 0.6145 -1.4081 8.4415 16 1 2.6880 -0.1563 8.5627 17 7 1.5517 -2.1025 1.2492 18 6 2.2285 -3.0565 0.5798 19 8 3.2444 -2.7707 -0.0246 20 6 1.7406 -4.4474 0.5848 21 7 0.6615 -4.8868 1.2025 22 6 0.5331 -6.1958 0.9814 23 6 1.5650 -6.5950 0.2102 24 7 2.3286 -5.5023 -0.0422 25 6 3.5521 -5.5112 -0.8469 26 6 4.0458 -6.9565 -0.9771 27 6 2.8935 -7.8534 -1.4388 28 6 1.8654 -7.9792 -0.3063 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1391 37 1 3.1300 -0.7216 -1.2489 38 1 1.9646 0.9985 2.5444 39 1 0.4436 0.0782 2.4548 40 1 2.4212 -1.5806 3.6011 41 1 2.8751 -2.6369 6.7323 42 1 0.7413 -2.3304 1.7311 43 1 -0.2576 -6.8275 1.3584 44 1 3.3414 -5.1060 -1.8366 45 1 4.3159 -4.9070 -0.3573 46 1 4.4112 -7.3037 -0.0107 47 1 4.8541 -6.9995 -1.7071 48 1 3.2797 -8.8410 -1.6911 49 1 2.4179 -7.4130 -2.3150 50 1 2.2759 -8.5907 0.4973 51 1 0.9521 -8.4360 -0.6874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284651663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:24 Heat of formation + Delta-G solvation = 21.147099 kcal Electronic energy + Delta-G solvation = -30496.639064 eV Core-core repulsion = 26624.654094 eV Total energy + Delta-G solvation = -3871.984970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45082 -39.83064 -37.29362 -36.84964 -34.37614 -33.29974 -32.90765 -31.10718 -30.58836 -28.45791 -27.57672 -27.07441 -26.55745 -24.66317 -23.87128 -22.98955 -21.95896 -21.39989 -20.27563 -19.14117 -18.50997 -17.71659 -16.86765 -16.29623 -16.07596 -15.52886 -15.29425 -14.70425 -14.53198 -14.33024 -14.24404 -13.96430 -13.87817 -13.73564 -13.58022 -13.33516 -13.22025 -13.06035 -12.65065 -12.16982 -12.14014 -11.90764 -11.75248 -11.40882 -11.34839 -11.33450 -11.25811 -11.17734 -11.05108 -10.78499 -10.68551 -10.49243 -10.17083 -10.02577 -9.88455 -9.82200 -9.68866 -9.60112 -8.84247 -8.63646 -8.24528 -6.87989 -5.71168 -3.00732 1.53534 2.51113 2.73499 3.46646 3.51895 3.54406 3.55999 3.69569 4.23519 4.36260 4.43715 4.53831 4.61193 4.67360 4.97829 5.01862 5.07137 5.12037 5.15574 5.21679 5.30865 5.39339 5.47624 5.52991 5.59955 5.60966 5.62182 5.69603 5.74065 5.83433 5.83596 5.92812 5.95849 6.07550 6.12695 6.17303 6.19733 6.34056 6.35445 6.49056 6.50877 6.54670 6.65923 6.68034 6.77275 6.98079 7.01726 7.73781 7.74228 8.07608 8.45913 8.49199 9.57962 10.14541 10.49476 11.51148 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.003936 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.506197 B = 7111.784606 C = 9061.979330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.129 4.129 5 C 0.150 3.850 6 H 0.088 0.912 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.240 4.240 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.680 5.680 18 C 0.608 3.392 19 O -0.548 6.548 20 C 0.150 3.850 21 N -0.439 5.439 22 C -0.022 4.022 23 C -0.008 4.008 24 N -0.411 5.411 25 C 0.104 3.896 26 C -0.137 4.137 27 C -0.126 4.126 28 C -0.046 4.046 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.030 0.970 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.415 0.585 43 H 0.175 0.825 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -8.898 -19.220 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.186 4.186 5 C 0.045 3.955 6 H 0.106 0.894 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.371 4.371 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.577 5.577 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 N -0.329 5.329 18 C 0.392 3.608 19 O -0.426 6.426 20 C -0.109 4.109 21 N -0.160 5.160 22 C -0.175 4.175 23 C -0.128 4.128 24 N -0.092 5.092 25 C -0.017 4.017 26 C -0.175 4.175 27 C -0.164 4.164 28 C -0.084 4.084 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.252 0.748 43 H 0.192 0.808 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.585 -7.973 -19.124 20.728 hybrid contribution 0.069 -0.682 0.858 1.098 sum -0.515 -8.655 -18.266 20.220 Atomic orbital electron populations 1.21926 0.94545 1.01886 1.01653 1.20905 0.96008 0.95642 0.95236 1.21880 1.01146 0.94890 1.01853 1.21879 1.01528 0.99545 0.95662 1.21372 0.99841 0.79498 0.94745 0.89364 1.21102 0.97561 0.94632 0.85298 1.42359 1.66957 1.27748 1.00493 1.19237 1.28916 1.05427 0.83565 0.91112 1.24742 1.00919 0.97332 0.97789 1.69694 1.43307 1.16473 1.28264 0.86136 0.77533 0.77797 0.84814 1.20563 1.21901 1.21971 1.45607 1.28995 1.07752 1.50559 1.16341 0.83218 0.81717 0.79501 1.90773 1.24755 1.81781 1.45252 1.22608 0.94835 0.91228 1.02237 1.70451 1.15315 1.11385 1.18828 1.21984 1.00430 0.92022 1.03052 1.21264 0.95674 0.90400 1.05428 1.44934 1.20195 1.07146 1.36927 1.22125 0.84972 0.98716 0.95929 1.21956 0.98843 0.93325 1.03333 1.21678 0.95930 1.00514 0.98249 1.20277 1.00098 0.90077 0.97985 0.91776 0.93205 0.92711 0.92559 0.92872 0.91806 0.93175 0.93943 0.91979 0.94553 0.95225 0.78037 0.93637 0.74767 0.80822 0.89465 0.87653 0.90589 0.89338 0.90421 0.91338 0.89660 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.97 37.16 0.30 -1.61 16 2 C -0.08 -1.09 0.62 -154.51 -0.10 -1.18 16 3 C -0.14 -1.80 8.12 37.16 0.30 -1.49 16 4 C -0.13 -1.83 7.00 37.16 0.26 -1.57 16 5 C 0.15 2.61 1.69 -67.93 -0.11 2.49 16 6 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 7 C 0.14 2.82 5.10 -4.04 -0.02 2.80 16 8 N -0.73 -18.63 5.43 -59.91 -0.33 -18.96 16 9 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 12 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 N -0.68 -12.14 3.64 -54.89 -0.20 -12.34 16 18 C 0.61 10.96 6.17 -12.53 -0.08 10.88 16 19 O -0.55 -10.11 12.37 5.27 0.07 -10.05 16 20 C 0.15 2.60 7.82 -154.86 -1.21 1.39 16 21 N -0.44 -7.72 10.92 -11.44 -0.12 -7.85 16 22 C -0.02 -0.31 11.82 -18.08 -0.21 -0.53 16 23 C -0.01 -0.10 6.57 -82.06 -0.54 -0.64 16 24 N -0.41 -5.83 3.14 -110.07 -0.35 -6.18 16 25 C 0.10 1.18 6.10 -3.93 -0.02 1.15 16 26 C -0.14 -1.08 5.93 -26.51 -0.16 -1.24 16 27 C -0.13 -0.86 5.96 -26.41 -0.16 -1.02 16 28 C -0.05 -0.37 6.31 -27.61 -0.17 -0.54 16 29 H 0.06 0.87 6.32 -51.93 -0.33 0.55 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.77 7.61 -51.93 -0.39 0.37 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 35 H 0.05 0.78 5.77 -51.93 -0.30 0.48 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.94 7.52 -51.93 -0.39 0.55 16 38 H 0.04 0.72 6.71 -51.93 -0.35 0.37 16 39 H 0.03 0.58 6.17 -51.93 -0.32 0.26 16 40 H 0.39 10.64 7.33 -40.82 -0.30 10.34 16 41 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.42 7.80 8.29 -40.82 -0.34 7.46 16 43 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.11 1.35 7.28 -51.93 -0.38 0.97 16 46 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.24 392.92 -9.93 -43.17 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -8.45 Total: 15.06 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.17 Total: 1.53 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -0.27 Total: -73.36 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.24 -9.93 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284651663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.316 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds