Wall clock time and date at job start Sat Apr 11 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47464 * 2 1 4 4 C 1.52999 * 109.46853 * 120.00134 * 2 1 3 5 5 C 1.53001 * 109.47093 * 175.03777 * 4 2 1 6 6 H 1.09002 * 109.47144 * 54.86056 * 5 4 2 7 7 C 1.50697 * 109.47421 * 174.86182 * 5 4 2 8 8 O 1.21290 * 119.99693 * 359.97438 * 7 5 4 9 9 N 1.34771 * 120.00483 * 179.97438 * 7 5 4 10 10 C 1.46504 * 120.00225 * 179.72460 * 9 7 5 11 11 C 1.53002 * 109.47164 * 173.10224 * 10 9 7 12 12 H 1.08996 * 109.87779 * 57.02441 * 11 10 9 13 13 C 1.54318 * 109.88186 * 178.04702 * 11 10 9 14 14 C 1.55157 * 102.94616 * 141.61057 * 13 11 10 15 15 C 1.54916 * 101.57694 * 324.49232 * 14 13 11 16 16 N 1.47027 * 109.87938 * 295.85129 * 11 10 9 17 17 C 1.36939 * 125.64893 * 61.62131 * 16 11 10 18 18 H 1.07995 * 119.99762 * 323.97172 * 17 16 11 19 19 C 1.38811 * 119.99679 * 143.97110 * 17 16 11 20 20 N 1.31625 * 119.99820 * 164.81117 * 19 17 16 21 21 Si 1.86802 * 120.00328 * 344.80973 * 19 17 16 22 22 H 1.48501 * 109.47401 * 90.11645 * 21 19 17 23 23 H 1.48501 * 109.46981 * 210.12195 * 21 19 17 24 24 H 1.48505 * 109.46983 * 330.12010 * 21 19 17 25 25 N 1.46507 * 109.47051 * 294.85946 * 5 4 2 26 26 C 1.36883 * 126.39363 * 122.89660 * 25 5 4 27 27 C 1.34669 * 106.81268 * 180.02562 * 26 25 5 28 28 N 1.34126 * 108.02251 * 0.02562 * 27 26 25 29 29 C 1.30500 * 109.25451 * 359.72773 * 28 27 26 30 30 H 1.08998 * 109.47218 * 304.59297 * 1 2 3 31 31 H 1.09002 * 109.46820 * 64.59169 * 1 2 3 32 32 H 1.09000 * 109.47046 * 184.59227 * 1 2 3 33 33 H 1.08999 * 109.47155 * 239.99807 * 2 1 3 34 34 H 1.08995 * 109.47349 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47100 * 299.99916 * 3 2 1 36 36 H 1.08999 * 109.47092 * 59.99769 * 3 2 1 37 37 H 1.08998 * 109.47571 * 55.03727 * 4 2 1 38 38 H 1.09003 * 109.47135 * 295.03563 * 4 2 1 39 39 H 0.96999 * 119.99894 * 359.97438 * 9 7 5 40 40 H 1.09005 * 109.46915 * 293.09960 * 10 9 7 41 41 H 1.08999 * 109.46904 * 53.09941 * 10 9 7 42 42 H 1.09003 * 110.71910 * 259.97204 * 13 11 10 43 43 H 1.08995 * 110.72547 * 23.24219 * 13 11 10 44 44 H 1.08993 * 111.00785 * 82.56376 * 14 13 11 45 45 H 1.09005 * 111.00767 * 206.42506 * 14 13 11 46 46 H 1.09002 * 110.36418 * 155.85107 * 15 14 13 47 47 H 1.09002 * 110.37018 * 278.17125 * 15 14 13 48 48 H 0.96998 * 119.99860 * 180.02562 * 20 19 17 49 49 H 1.07998 * 126.59619 * 359.97438 * 26 25 5 50 50 H 1.08009 * 125.98633 * 180.02562 * 27 26 25 51 51 H 1.08004 * 125.64619 * 180.28880 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8303 1.1885 6 1 3.9948 0.1619 1.0511 7 6 4.0775 -1.4264 2.4741 8 8 3.2998 -1.7334 3.3527 9 7 5.4002 -1.6184 2.6476 10 6 5.8991 -2.1923 3.8998 11 6 7.3998 -2.4628 3.7746 12 1 7.9223 -1.5413 3.5179 13 6 7.9450 -3.0221 5.1055 14 6 8.9707 -4.0891 4.6399 15 6 8.2813 -4.6503 3.3712 16 7 7.6397 -3.4816 2.7421 17 6 7.3198 -3.3644 1.4157 18 1 6.4200 -2.8450 1.1212 19 6 8.1522 -3.9134 0.4500 20 7 7.7166 -4.0702 -0.7822 21 14 9.8904 -4.4297 0.8989 22 1 9.8870 -5.8470 1.3423 23 1 10.7719 -4.2841 -0.2873 24 1 10.3941 -3.5683 1.9987 25 7 3.9487 -1.6887 0.0650 26 6 4.7694 -1.3460 -0.9755 27 6 4.8524 -2.4246 -1.7777 28 7 4.1023 -3.3989 -1.2419 29 6 3.5623 -2.9670 -0.1352 30 1 -0.3633 0.5834 0.8460 31 1 -0.3633 0.4410 -0.9283 32 1 -0.3633 -1.0244 0.0823 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6058 -1.7201 1.2948 38 1 1.7510 -0.1587 2.1370 39 1 6.0221 -1.3732 1.9447 40 1 5.7230 -1.4917 4.7161 41 1 5.3771 -3.1271 4.1043 42 1 8.4382 -2.2381 5.6801 43 1 7.1461 -3.4828 5.6864 44 1 9.9279 -3.6297 4.3936 45 1 9.0948 -4.8669 5.3935 46 1 9.0207 -5.0851 2.6986 47 1 7.5319 -5.3935 3.6438 48 1 8.2981 -4.4542 -1.4570 49 1 5.2562 -0.3936 -1.1250 50 1 5.4229 -2.4929 -2.6922 51 1 2.9124 -3.5370 0.5123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663502409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:20 Heat of formation + Delta-G solvation = 54.059639 kcal Electronic energy + Delta-G solvation = -31257.240840 eV Core-core repulsion = 27386.683064 eV Total energy + Delta-G solvation = -3870.557776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57105 -39.42593 -38.02696 -36.69714 -34.17630 -33.23544 -32.58091 -29.94537 -29.63966 -29.17825 -28.30529 -27.28564 -25.52433 -24.37789 -23.26589 -21.26083 -20.84392 -20.61739 -20.05486 -19.74216 -19.22679 -17.67695 -16.81427 -16.32248 -16.09522 -15.79495 -15.16676 -14.71659 -14.52915 -14.13640 -14.06092 -13.78984 -13.47257 -13.39090 -13.19300 -12.98720 -12.74558 -12.62214 -12.48410 -12.34723 -12.23961 -12.04619 -11.97412 -11.76262 -11.33369 -11.30069 -11.00343 -10.91442 -10.81788 -10.73164 -10.67695 -10.49490 -10.23881 -9.88038 -9.74438 -9.50928 -9.15751 -8.80222 -8.60383 -8.44373 -7.69910 -6.81841 -5.88901 -3.39364 2.50199 2.78126 3.31816 3.43959 3.46291 3.49184 3.57016 4.09800 4.52600 4.57363 4.69103 4.79562 4.91333 4.97970 5.05630 5.13504 5.21714 5.28543 5.37262 5.44843 5.47856 5.49340 5.51732 5.60352 5.66995 5.73984 5.79264 5.82970 5.87691 5.89890 6.00489 6.06695 6.07074 6.17836 6.20926 6.21232 6.26678 6.31385 6.34328 6.46673 6.56579 6.78455 6.82972 6.87346 6.92370 7.51065 7.80146 7.88506 7.93687 8.36424 8.49606 8.84056 8.89409 9.69593 10.25427 11.20812 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.004585 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.107406 B = 6105.379561 C = 7582.649641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.105 4.105 5 C 0.122 3.878 6 H 0.115 0.885 7 C 0.500 3.500 8 O -0.547 6.547 9 N -0.693 5.693 10 C 0.115 3.885 11 C 0.144 3.856 12 H 0.045 0.955 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.115 3.885 16 N -0.599 5.599 17 C -0.265 4.265 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.875 5.875 21 Si 0.886 3.114 22 H -0.290 1.290 23 H -0.307 1.307 24 H -0.274 1.274 25 N -0.449 5.449 26 C -0.066 4.066 27 C 0.023 3.977 28 N -0.472 5.472 29 C 0.190 3.810 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.413 0.587 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.029 0.971 48 H 0.260 0.740 49 H 0.162 0.838 50 H 0.159 0.841 51 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 10.282 4.584 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.143 4.143 5 C 0.014 3.986 6 H 0.133 0.867 7 C 0.283 3.717 8 O -0.425 6.425 9 N -0.345 5.345 10 C -0.011 4.011 11 C 0.037 3.963 12 H 0.063 0.937 13 C -0.159 4.159 14 C -0.174 4.174 15 C -0.009 4.009 16 N -0.326 5.326 17 C -0.393 4.393 18 H 0.112 0.888 19 C -0.160 4.160 20 N -0.515 5.515 21 Si 0.718 3.282 22 H -0.218 1.218 23 H -0.235 1.235 24 H -0.199 1.199 25 N -0.137 5.137 26 C -0.197 4.197 27 C -0.125 4.125 28 N -0.190 5.190 29 C -0.092 4.092 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.252 0.748 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.179 0.821 50 H 0.176 0.824 51 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.037 9.320 4.684 13.168 hybrid contribution 1.756 0.397 0.287 1.823 sum -6.281 9.717 4.971 12.593 Atomic orbital electron populations 1.21788 0.94888 1.01899 1.01517 1.21123 0.95979 0.96175 0.98400 1.21902 1.00934 0.96009 1.01769 1.21769 0.90996 1.02637 0.98916 1.21546 0.97828 0.95230 0.83975 0.86733 1.20539 0.83189 0.79530 0.88435 1.90677 1.56139 1.51604 1.44108 1.46208 1.06969 1.61443 1.19900 1.22001 0.96746 0.97657 0.84683 1.21243 0.91684 0.93722 0.89695 0.93692 1.22478 0.98560 0.98451 0.96423 1.22776 0.98424 0.98174 0.98033 1.21929 0.95183 0.91365 0.92447 1.44695 1.72527 1.10768 1.04562 1.18647 1.04933 1.37845 0.77855 0.88795 1.25407 0.96965 0.98598 0.95022 1.69847 1.35245 1.44410 1.01964 0.86848 0.87102 0.77942 0.76298 1.21802 1.23538 1.19942 1.45202 1.37914 1.12187 1.18372 1.22397 1.02711 1.02445 0.92103 1.21899 1.00612 0.88820 1.01171 1.70252 1.11563 1.29192 1.07960 1.24589 1.03531 0.83193 0.97895 0.92749 0.92750 0.92547 0.90524 0.92754 0.92593 0.92641 0.90393 0.89564 0.74786 0.92881 0.91579 0.91488 0.91340 0.91664 0.91619 0.94001 0.95302 0.92963 0.82086 0.82389 0.79699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.10 -1.02 2.86 -90.62 -0.26 -1.28 16 3 C -0.15 -1.34 8.95 37.16 0.33 -1.01 16 4 C -0.10 -1.26 3.47 -26.73 -0.09 -1.35 16 5 C 0.12 1.66 2.64 -69.08 -0.18 1.48 16 6 H 0.11 1.33 6.28 -51.93 -0.33 1.01 16 7 C 0.50 8.42 7.11 -10.99 -0.08 8.34 16 8 O -0.55 -10.46 15.89 5.55 0.09 -10.37 16 9 N -0.69 -12.21 4.32 -60.29 -0.26 -12.47 16 10 C 0.11 2.01 5.16 -4.04 -0.02 1.99 16 11 C 0.14 2.61 3.30 -66.95 -0.22 2.39 16 12 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.12 -1.82 6.48 -24.90 -0.16 -1.98 16 14 C -0.14 -2.26 7.09 -24.58 -0.17 -2.44 16 15 C 0.12 2.43 6.23 -2.52 -0.02 2.42 16 16 N -0.60 -13.41 2.69 -162.57 -0.44 -13.85 16 17 C -0.27 -6.79 9.53 -15.06 -0.14 -6.93 16 18 H 0.09 2.46 5.54 -52.49 -0.29 2.17 16 19 C 0.04 1.16 5.47 -17.43 -0.10 1.07 16 20 N -0.88 -24.77 13.97 55.49 0.78 -23.99 16 21 Si 0.89 21.95 24.80 -169.99 -4.22 17.73 16 22 H -0.29 -7.23 6.70 56.52 0.38 -6.85 16 23 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.27 -6.63 7.08 56.52 0.40 -6.23 16 25 N -0.45 -7.12 1.99 -112.69 -0.22 -7.34 16 26 C -0.07 -1.10 11.54 -16.56 -0.19 -1.29 16 27 C 0.02 0.44 11.87 -17.81 -0.21 0.23 16 28 N -0.47 -9.99 11.25 -14.66 -0.16 -10.15 16 29 C 0.19 3.53 11.56 -90.38 -1.05 2.49 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.94 7.63 -51.93 -0.40 0.54 16 34 H 0.05 0.49 6.46 -51.93 -0.34 0.16 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 38 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 39 H 0.41 7.67 6.38 -40.82 -0.26 7.41 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.04 0.97 2.95 -51.93 -0.15 0.82 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 50 H 0.16 3.01 8.06 -52.48 -0.42 2.59 16 51 H 0.19 3.22 8.00 -52.48 -0.42 2.80 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -30.90 397.06 -9.15 -40.05 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.48 Total: 11.29 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.22 Total: 3.12 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.31 Total: -67.81 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.22 Total: 17.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.90 -9.15 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663502409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.105 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds