Wall clock time and date at job start Sat Apr 11 2020 04:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46712 * 2 1 4 4 C 1.52994 * 109.47344 * 239.99572 * 2 1 3 5 5 C 1.53002 * 109.47008 * 184.99657 * 4 2 1 6 6 H 1.08996 * 109.47225 * 305.00432 * 5 4 2 7 7 C 1.50707 * 109.46984 * 184.99978 * 5 4 2 8 8 O 1.21274 * 119.99719 * 0.02562 * 7 5 4 9 9 N 1.34773 * 119.99484 * 180.02562 * 7 5 4 10 10 C 1.46512 * 119.99358 * 180.02562 * 9 7 5 11 11 C 1.53002 * 109.46835 * 185.13525 * 10 9 7 12 12 H 1.09000 * 109.87214 * 303.57369 * 11 10 9 13 13 C 1.54320 * 109.88237 * 64.58717 * 11 10 9 14 14 C 1.55154 * 102.94249 * 141.60775 * 13 11 10 15 15 C 1.54910 * 101.58142 * 324.50150 * 14 13 11 16 16 N 1.47021 * 109.88023 * 182.39633 * 11 10 9 17 17 C 1.36933 * 125.64790 * 61.62263 * 16 11 10 18 18 H 1.08012 * 119.99899 * 14.75682 * 17 16 11 19 19 C 1.38809 * 120.00079 * 194.75595 * 17 16 11 20 20 N 1.31623 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99916 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47287 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47063 * 120.00155 * 21 19 17 24 24 H 1.48505 * 109.46763 * 239.99946 * 21 19 17 25 25 N 1.46498 * 109.47040 * 65.00306 * 5 4 2 26 26 C 1.36878 * 126.39815 * 239.71308 * 25 5 4 27 27 C 1.34668 * 106.81894 * 179.84316 * 26 25 5 28 28 N 1.34129 * 108.02072 * 0.41699 * 27 26 25 29 29 C 1.30494 * 109.25329 * 359.73610 * 28 27 26 30 30 H 1.08996 * 109.47189 * 60.00826 * 1 2 3 31 31 H 1.09003 * 109.46569 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46975 * 299.99934 * 1 2 3 33 33 H 1.09006 * 109.47121 * 119.99193 * 2 1 3 34 34 H 1.09005 * 109.47174 * 299.99616 * 3 2 1 35 35 H 1.08998 * 109.47647 * 59.99883 * 3 2 1 36 36 H 1.09003 * 109.47188 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47162 * 304.99943 * 4 2 1 38 38 H 1.08997 * 109.47053 * 64.99700 * 4 2 1 39 39 H 0.96998 * 120.00768 * 0.02562 * 9 7 5 40 40 H 1.09000 * 109.47157 * 305.13530 * 10 9 7 41 41 H 1.08993 * 109.46825 * 65.13422 * 10 9 7 42 42 H 1.08993 * 110.72461 * 259.97347 * 13 11 10 43 43 H 1.08999 * 110.72302 * 23.24866 * 13 11 10 44 44 H 1.09006 * 111.00200 * 82.57531 * 14 13 11 45 45 H 1.09000 * 111.00784 * 206.42314 * 14 13 11 46 46 H 1.08999 * 110.36595 * 155.84608 * 15 14 13 47 47 H 1.09004 * 110.36834 * 278.16540 * 15 14 13 48 48 H 0.96993 * 119.99694 * 179.97438 * 20 19 17 49 49 H 1.08001 * 126.58938 * 359.97438 * 26 25 5 50 50 H 1.08001 * 125.99038 * 180.18846 * 27 26 25 51 51 H 1.08006 * 125.65127 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.8310 -1.1878 6 1 3.9954 0.1612 -1.0526 7 6 4.0775 -1.4303 -2.4721 8 8 3.2998 -1.7388 -3.3500 9 7 5.4001 -1.6234 -2.6447 10 6 5.8984 -2.2055 -3.8935 11 6 7.4072 -2.4344 -3.7830 12 1 7.9072 -1.4973 -3.5381 13 6 7.6999 -3.4861 -2.6922 14 6 8.8708 -4.3017 -3.3013 15 6 8.5015 -4.3002 -4.8057 16 7 7.9265 -2.9653 -5.0518 17 6 7.8831 -2.3258 -6.2619 18 1 7.6638 -1.2691 -6.3067 19 6 8.1208 -3.0354 -7.4309 20 7 8.3885 -4.3230 -7.3763 21 14 8.0622 -2.1628 -9.0816 22 1 7.7438 -0.7276 -8.8718 23 1 9.3811 -2.2848 -9.7531 24 1 7.0144 -2.7826 -9.9321 25 7 3.9481 -1.6870 -0.0624 26 6 4.7284 -1.3271 1.0030 27 6 4.8247 -2.4093 1.7987 28 7 4.1299 -3.4057 1.2299 29 6 3.6021 -2.9803 0.1148 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 0.8901 34 1 1.6766 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.6055 -1.7198 -1.2950 38 1 1.7517 -0.1585 -2.1369 39 1 6.0221 -1.3770 -1.9424 40 1 5.3989 -3.1570 -4.0756 41 1 5.6938 -1.5239 -4.7191 42 1 8.0074 -3.0041 -1.7643 43 1 6.8309 -4.1231 -2.5276 44 1 9.8246 -3.8016 -3.1326 45 1 8.8881 -5.3167 -2.9042 46 1 9.3929 -4.4476 -5.4153 47 1 7.7646 -5.0753 -5.0162 48 1 8.5542 -4.8189 -8.1932 49 1 5.1784 -0.3603 1.1739 50 1 5.3693 -2.4662 2.7296 51 1 2.9902 -3.5658 -0.5556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663502411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:28 Heat of formation + Delta-G solvation = 38.223750 kcal Electronic energy + Delta-G solvation = -29984.547026 eV Core-core repulsion = 26113.302554 eV Total energy + Delta-G solvation = -3871.244471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37528 -39.79347 -37.85387 -36.99600 -34.50909 -33.79746 -32.52124 -30.11544 -29.71260 -29.13903 -28.66279 -27.55048 -25.54174 -24.64053 -23.53884 -21.81399 -21.44821 -20.63061 -20.19576 -19.97494 -19.55109 -18.01186 -16.98898 -16.61213 -16.32790 -15.67336 -15.06063 -14.95786 -14.70627 -14.59825 -14.27982 -14.14444 -14.03543 -13.87423 -13.61144 -13.45198 -13.14631 -12.82796 -12.59856 -12.49346 -12.14377 -12.07479 -11.93967 -11.81099 -11.38932 -11.27914 -11.11730 -10.99629 -10.97864 -10.85032 -10.42011 -10.30516 -10.11500 -10.07211 -9.97319 -9.87634 -9.76703 -9.49136 -8.85825 -8.64090 -8.63443 -6.89659 -5.81934 -3.19152 1.87719 2.06701 2.96327 3.05473 3.11958 3.35868 3.41981 3.43958 4.17295 4.30635 4.43747 4.47729 4.61116 4.63253 4.64952 4.77615 4.88484 5.25975 5.26545 5.29012 5.30566 5.34931 5.39100 5.45761 5.48979 5.52370 5.56487 5.56957 5.61823 5.76344 5.81713 5.91279 5.96951 6.01373 6.05143 6.11047 6.20521 6.40669 6.43788 6.49966 6.59511 6.63618 6.71053 6.96485 6.98685 7.46803 7.50586 7.57317 7.74473 7.96933 8.14028 8.20976 9.11863 9.72411 10.39779 11.29988 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.003081 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.067747 B = 9084.644753 C =10422.838147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.109 4.109 5 C 0.116 3.884 6 H 0.122 0.878 7 C 0.498 3.502 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.108 3.892 11 C 0.153 3.847 12 H 0.036 0.964 13 C -0.124 4.124 14 C -0.148 4.148 15 C 0.172 3.828 16 N -0.588 5.588 17 C -0.236 4.236 18 H 0.076 0.924 19 C 0.000 4.000 20 N -0.913 5.913 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 N -0.447 5.447 26 C -0.059 4.059 27 C -0.026 4.026 28 N -0.491 5.491 29 C 0.195 3.805 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.396 0.604 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.026 0.974 48 H 0.254 0.746 49 H 0.173 0.827 50 H 0.168 0.832 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 9.457 18.446 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.148 4.148 5 C 0.010 3.990 6 H 0.140 0.860 7 C 0.280 3.720 8 O -0.400 6.400 9 N -0.360 5.360 10 C -0.017 4.017 11 C 0.044 3.956 12 H 0.054 0.946 13 C -0.162 4.162 14 C -0.187 4.187 15 C 0.048 3.952 16 N -0.312 5.312 17 C -0.364 4.364 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.559 5.559 21 Si 0.741 3.259 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.215 1.215 25 N -0.132 5.132 26 C -0.191 4.191 27 C -0.174 4.174 28 N -0.209 5.209 29 C -0.088 4.088 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.190 0.810 50 H 0.185 0.815 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.293 8.451 17.713 22.161 hybrid contribution 0.365 1.370 -0.960 1.713 sum -9.928 9.821 16.753 21.810 Atomic orbital electron populations 1.21795 0.94550 1.02021 1.01882 1.21130 0.96378 0.96230 0.97885 1.21923 1.00709 0.95940 1.02214 1.21836 0.90368 1.03048 0.99501 1.21811 0.98612 0.95268 0.83355 0.85983 1.20424 0.83304 0.79926 0.88359 1.90766 1.55756 1.49879 1.43564 1.46176 1.06608 1.62756 1.20430 1.22354 0.97021 0.98470 0.83853 1.21114 0.90061 0.95698 0.88687 0.94637 1.22573 0.98979 0.97897 0.96752 1.23003 0.97209 0.98587 0.99878 1.21458 0.98054 0.86553 0.89154 1.44492 1.66063 1.17552 1.03087 1.19012 1.43219 0.92193 0.82022 0.90648 1.24931 1.01388 0.95586 0.97871 1.69949 1.52818 1.06456 1.26688 0.86075 0.77319 0.78644 0.83887 1.20382 1.21646 1.21548 1.45477 1.38542 1.11415 1.17757 1.22727 1.03146 1.02184 0.91046 1.22284 1.03972 0.89573 1.01591 1.70352 1.12888 1.30423 1.07259 1.24940 1.03244 0.82958 0.97621 0.92425 0.92517 0.92586 0.90927 0.92270 0.92419 0.92912 0.90166 0.88857 0.77025 0.91362 0.91252 0.92548 0.91919 0.92302 0.92269 0.90936 0.95552 0.93573 0.80979 0.81485 0.78463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.10 -0.72 2.86 -90.62 -0.26 -0.98 16 3 C -0.15 -0.94 8.95 37.16 0.33 -0.61 16 4 C -0.11 -0.98 3.49 -26.73 -0.09 -1.07 16 5 C 0.12 1.09 2.64 -69.08 -0.18 0.91 16 6 H 0.12 0.89 6.28 -51.93 -0.33 0.56 16 7 C 0.50 6.79 7.06 -10.98 -0.08 6.72 16 8 O -0.52 -9.23 15.91 5.56 0.09 -9.15 16 9 N -0.71 -9.92 5.33 -60.29 -0.32 -10.24 16 10 C 0.11 2.00 5.07 -4.03 -0.02 1.98 16 11 C 0.15 2.96 3.22 -66.95 -0.22 2.74 16 12 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 13 C -0.12 -2.09 6.10 -24.90 -0.15 -2.25 16 14 C -0.15 -2.74 7.08 -24.58 -0.17 -2.91 16 15 C 0.17 4.09 5.41 -2.53 -0.01 4.08 16 16 N -0.59 -14.36 3.13 -162.58 -0.51 -14.87 16 17 C -0.24 -6.36 9.76 -15.06 -0.15 -6.51 16 18 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 19 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 20 N -0.91 -26.36 10.58 55.49 0.59 -25.77 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 N -0.45 -4.28 1.98 -112.69 -0.22 -4.51 16 26 C -0.06 -0.51 11.54 -16.56 -0.19 -0.70 16 27 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 28 N -0.49 -6.43 11.25 -14.66 -0.16 -6.59 16 29 C 0.19 2.28 11.59 -90.38 -1.05 1.24 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.61 7.62 -51.93 -0.40 0.22 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.30 6.46 -51.93 -0.34 -0.03 16 37 H 0.08 0.80 7.80 -51.93 -0.41 0.39 16 38 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 39 H 0.40 4.66 8.34 -40.82 -0.34 4.32 16 40 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 41 H 0.07 1.45 7.92 -51.93 -0.41 1.03 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 47 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 50 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 51 H 0.20 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -31.93 407.21 -10.49 -42.42 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.85 Total: 4.42 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.21 Total: 1.37 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.63 Total: -61.99 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.93 -10.49 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663502411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.639 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds