Wall clock time and date at job start Sat Apr 11 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47512 * 2 1 4 4 C 1.53001 * 109.46863 * 119.99885 * 2 1 3 5 5 C 1.53000 * 109.47175 * 65.00189 * 4 2 1 6 6 H 1.09007 * 109.47179 * 304.99890 * 5 4 2 7 7 C 1.50697 * 109.47566 * 184.99800 * 5 4 2 8 8 O 1.21288 * 119.99711 * 336.58280 * 7 5 4 9 9 N 1.34776 * 120.00189 * 156.57341 * 7 5 4 10 10 C 1.46498 * 120.00269 * 185.45897 * 9 7 5 11 11 C 1.53001 * 109.46822 * 84.72322 * 10 9 7 12 12 H 1.09002 * 110.00067 * 297.15900 * 11 10 9 13 13 C 1.54334 * 109.99255 * 176.12403 * 11 10 9 14 14 C 1.55157 * 103.02001 * 218.66671 * 13 11 10 15 15 C 1.54908 * 101.58091 * 35.30515 * 14 13 11 16 16 N 1.47018 * 109.88340 * 58.25516 * 11 10 9 17 17 C 1.36935 * 125.64710 * 298.39391 * 16 11 10 18 18 H 1.08002 * 120.00183 * 342.36952 * 17 16 11 19 19 C 1.38819 * 119.99780 * 162.63828 * 17 16 11 20 20 N 1.31614 * 120.00217 * 344.31849 * 19 17 16 21 21 Si 1.86804 * 119.99794 * 164.31263 * 19 17 16 22 22 H 1.48501 * 109.46877 * 64.98971 * 21 19 17 23 23 H 1.48492 * 109.47100 * 184.98709 * 21 19 17 24 24 H 1.48500 * 109.47080 * 304.99308 * 21 19 17 25 25 N 1.46506 * 109.47156 * 64.99818 * 5 4 2 26 26 C 1.36886 * 126.39547 * 241.11980 * 25 5 4 27 27 C 1.34671 * 106.81577 * 179.97438 * 26 25 5 28 28 N 1.34131 * 108.01977 * 0.02562 * 27 26 25 29 29 C 1.30503 * 109.25564 * 359.71707 * 28 27 26 30 30 H 1.09007 * 109.46728 * 60.00061 * 1 2 3 31 31 H 1.08994 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47290 * 300.00543 * 1 2 3 33 33 H 1.09003 * 109.47579 * 239.99487 * 2 1 3 34 34 H 1.09002 * 109.47612 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47324 * 300.00254 * 3 2 1 36 36 H 1.09005 * 109.46621 * 59.99780 * 3 2 1 37 37 H 1.08994 * 109.47255 * 305.00186 * 4 2 1 38 38 H 1.09003 * 109.47203 * 184.99285 * 4 2 1 39 39 H 0.97002 * 119.99697 * 5.47264 * 9 7 5 40 40 H 1.09001 * 109.47029 * 324.72465 * 10 9 7 41 41 H 1.08993 * 109.47509 * 204.72303 * 10 9 7 42 42 H 1.09000 * 110.85503 * 100.19608 * 13 11 10 43 43 H 1.08999 * 110.51425 * 336.97522 * 13 11 10 44 44 H 1.09004 * 111.00390 * 277.22902 * 14 13 11 45 45 H 1.09007 * 111.00017 * 153.38064 * 14 13 11 46 46 H 1.09001 * 110.36411 * 204.14926 * 15 14 13 47 47 H 1.08998 * 110.45911 * 81.87781 * 15 14 13 48 48 H 0.96999 * 120.00482 * 180.02562 * 20 19 17 49 49 H 1.08003 * 126.59103 * 0.04025 * 26 25 5 50 50 H 1.07999 * 125.98800 * 179.97438 * 27 26 25 51 51 H 1.08001 * 125.64724 * 180.29328 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5561 -2.2707 1.0527 7 6 2.0292 -2.8785 2.4722 8 8 2.9190 -2.4178 3.1558 9 7 1.3928 -4.0010 2.8613 10 6 1.6918 -4.5981 4.1652 11 6 0.8495 -3.9148 5.2443 12 1 1.1142 -2.8595 5.3112 13 6 1.0827 -4.5990 6.6078 14 6 -0.3318 -4.5986 7.2456 15 6 -1.2326 -4.8158 6.0042 16 7 -0.5790 -4.0527 4.9255 17 6 -1.1987 -3.5592 3.8085 18 1 -0.7204 -2.7892 3.2213 19 6 -2.4442 -4.0447 3.4341 20 7 -2.8935 -5.1700 3.9479 21 14 -3.4824 -3.1007 2.2009 22 1 -2.7963 -3.0869 0.8840 23 1 -4.8065 -3.7585 2.0624 24 1 -3.6696 -1.7063 2.6762 25 7 2.3147 -2.8421 0.0626 26 6 1.7155 -3.4344 -1.0162 27 6 2.7037 -3.8982 -1.8048 28 7 3.8744 -3.5977 -1.2231 29 6 3.6492 -2.9600 -0.1070 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6053 -0.2618 2.1369 38 1 3.1263 -0.6445 1.2952 39 1 0.7369 -4.4136 2.2778 40 1 2.7498 -4.4652 4.3916 41 1 1.4565 -5.6621 4.1402 42 1 1.7803 -4.0237 7.2165 43 1 1.4419 -5.6185 6.4671 44 1 -0.5457 -3.6413 7.7210 45 1 -0.4404 -5.4186 7.9555 46 1 -2.2343 -4.4281 6.1900 47 1 -1.2779 -5.8739 5.7468 48 1 -3.7636 -5.5094 3.6860 49 1 0.6542 -3.5136 -1.2001 50 1 2.5760 -4.4211 -2.7411 51 1 4.4049 -2.5901 0.5701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663502412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:33 Heat of formation + Delta-G solvation = 36.926969 kcal Electronic energy + Delta-G solvation = -31059.376658 eV Core-core repulsion = 27188.075954 eV Total energy + Delta-G solvation = -3871.300704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12891 -39.56490 -37.70665 -36.72500 -34.05596 -33.54501 -32.70503 -29.89563 -29.44837 -29.13287 -28.63598 -27.26539 -25.52496 -24.57041 -23.41162 -21.55186 -21.20288 -20.46061 -20.14535 -19.76450 -19.25035 -17.84851 -16.97922 -16.58681 -16.00044 -15.31506 -15.20602 -14.68508 -14.56886 -14.39370 -14.27712 -13.99785 -13.87161 -13.66260 -13.50705 -13.12481 -12.70968 -12.40570 -12.31584 -12.25827 -12.20926 -12.01098 -11.99842 -11.80913 -11.26519 -11.07557 -10.98695 -10.86680 -10.82002 -10.74712 -10.57856 -10.26724 -10.13809 -10.10089 -9.92413 -9.87736 -9.77321 -9.24086 -8.70872 -8.48040 -8.41474 -6.89206 -5.92287 -3.24937 2.11983 2.32820 3.18073 3.23415 3.28933 3.30758 3.32030 3.55417 4.32382 4.49944 4.64938 4.75071 4.83836 4.94035 4.94938 5.05865 5.17514 5.25616 5.35282 5.49205 5.50439 5.53075 5.55062 5.57033 5.64038 5.74686 5.77350 5.78585 5.84107 5.88635 5.93254 6.04198 6.11189 6.19395 6.22302 6.25602 6.27751 6.36253 6.43099 6.51723 6.60907 6.80792 6.89302 7.00972 7.22737 7.28621 7.50620 7.59431 7.89362 8.12418 8.16261 8.49367 9.01659 9.66279 10.39879 11.19927 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010368 B = 0.004676 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.998349 B = 5986.813602 C = 6843.736008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.108 4.108 5 C 0.115 3.885 6 H 0.122 0.878 7 C 0.506 3.494 8 O -0.544 6.544 9 N -0.683 5.683 10 C 0.109 3.891 11 C 0.143 3.857 12 H 0.038 0.962 13 C -0.122 4.122 14 C -0.145 4.145 15 C 0.171 3.829 16 N -0.589 5.589 17 C -0.228 4.228 18 H 0.067 0.933 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.895 3.105 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.283 1.283 25 N -0.441 5.441 26 C -0.052 4.052 27 C -0.033 4.033 28 N -0.497 5.497 29 C 0.191 3.809 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.035 0.965 48 H 0.255 0.745 49 H 0.173 0.827 50 H 0.167 0.833 51 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 5.531 -4.965 10.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.146 4.146 5 C 0.008 3.992 6 H 0.140 0.860 7 C 0.289 3.711 8 O -0.421 6.421 9 N -0.330 5.330 10 C -0.017 4.017 11 C 0.034 3.966 12 H 0.056 0.944 13 C -0.161 4.161 14 C -0.184 4.184 15 C 0.046 3.954 16 N -0.314 5.314 17 C -0.357 4.357 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.548 5.548 21 Si 0.725 3.275 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.210 1.210 25 N -0.125 5.125 26 C -0.185 4.185 27 C -0.181 4.181 28 N -0.216 5.216 29 C -0.092 4.092 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.244 0.756 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.190 0.810 50 H 0.184 0.816 51 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.189 5.654 -4.745 11.025 hybrid contribution -2.050 0.350 -0.576 2.158 sum 6.139 6.004 -5.321 10.102 Atomic orbital electron populations 1.21947 0.94899 1.02059 1.02196 1.21121 0.96090 0.96471 0.97856 1.21788 1.00939 0.95529 1.01838 1.21825 1.02813 0.90571 0.99409 1.21802 0.99775 0.94061 0.83550 0.86014 1.20187 0.82589 0.81645 0.86669 1.90674 1.30634 1.64574 1.56263 1.45793 1.41694 1.25670 1.19890 1.22107 0.99028 0.97351 0.83194 1.21388 0.86546 0.96982 0.91642 0.94419 1.22490 0.97406 1.00095 0.96117 1.22935 0.96141 1.00403 0.98902 1.21300 0.94306 0.95684 0.84090 1.44489 1.01147 1.64328 1.21393 1.18728 1.00332 1.14202 1.02400 0.91565 1.24859 0.99193 0.96415 0.99433 1.69960 1.19689 1.18749 1.46441 0.86490 0.80439 0.79769 0.80832 1.21096 1.21507 1.20990 1.45437 1.07504 1.42461 1.17136 1.22808 1.00177 1.05125 0.90366 1.22234 0.88013 1.06143 1.01674 1.70318 1.28033 1.15996 1.07205 1.24927 0.84066 1.02508 0.97668 0.92513 0.92615 0.92120 0.91034 0.92657 0.92665 0.92459 0.89269 0.90042 0.75582 0.91571 0.90808 0.92130 0.91851 0.92388 0.92265 0.93283 0.94742 0.93522 0.80953 0.81569 0.78360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.95 37.16 0.33 -1.40 16 2 C -0.10 -1.06 2.86 -90.62 -0.26 -1.32 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.11 -1.35 3.58 -26.73 -0.10 -1.45 16 5 C 0.11 1.59 2.64 -69.08 -0.18 1.40 16 6 H 0.12 1.70 6.29 -51.93 -0.33 1.38 16 7 C 0.51 8.46 6.76 -10.99 -0.07 8.38 16 8 O -0.54 -10.24 15.81 5.55 0.09 -10.15 16 9 N -0.68 -11.89 3.49 -60.30 -0.21 -12.10 16 10 C 0.11 1.94 5.60 -4.04 -0.02 1.92 16 11 C 0.14 2.77 3.46 -66.95 -0.23 2.54 16 12 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 13 C -0.12 -2.03 6.49 -24.89 -0.16 -2.19 16 14 C -0.15 -2.56 7.09 -24.58 -0.17 -2.74 16 15 C 0.17 3.81 5.38 -2.53 -0.01 3.80 16 16 N -0.59 -13.38 3.11 -162.57 -0.51 -13.88 16 17 C -0.23 -5.50 8.25 -15.06 -0.12 -5.62 16 18 H 0.07 1.55 7.17 -52.49 -0.38 1.17 16 19 C 0.00 -0.01 5.29 -17.43 -0.09 -0.10 16 20 N -0.90 -24.29 11.29 55.49 0.63 -23.67 16 21 Si 0.89 19.85 29.58 -169.99 -5.03 14.82 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.44 -5.91 1.98 -112.69 -0.22 -6.14 16 26 C -0.05 -0.66 11.54 -16.56 -0.19 -0.86 16 27 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 28 N -0.50 -7.65 11.25 -14.66 -0.16 -7.81 16 29 C 0.19 2.73 11.60 -90.38 -1.05 1.68 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.05 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.85 7.62 -51.93 -0.40 0.45 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.03 7.71 -51.93 -0.40 0.63 16 39 H 0.41 7.28 8.19 -40.82 -0.33 6.94 16 40 H 0.07 1.14 7.51 -51.93 -0.39 0.75 16 41 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.98 7.81 -51.93 -0.41 0.57 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 1.22 7.63 -51.93 -0.40 0.82 16 47 H 0.03 0.84 7.88 -51.93 -0.41 0.43 16 48 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 49 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 50 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 51 H 0.20 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 404.67 15.07 6.10 6.10 Total: -1.00 -28.69 404.67 -10.35 -39.04 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -8.82 Total: 11.46 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.21 Total: 2.34 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.48 Total: -63.60 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.69 -10.35 -39.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663502412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.971 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds