Wall clock time and date at job start Sat Apr 11 2020 04:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 H 1.08998 * 109.49955 * 305.00317 * 3 2 1 5 5 C 1.53192 * 109.49603 * 65.07084 * 3 2 1 6 6 N 1.46924 * 108.77475 * 174.59003 * 5 3 2 7 7 C 1.34773 * 120.63387 * 126.41557 * 6 5 3 8 8 O 1.21629 * 119.99953 * 353.29025 * 7 6 5 9 9 C 1.47159 * 120.00395 * 173.29699 * 7 6 5 10 10 C 1.38415 * 126.87950 * 334.58961 * 9 7 6 11 11 C 1.39678 * 105.35520 * 179.97438 * 10 9 7 12 12 C 1.50698 * 126.06747 * 180.14956 * 11 10 9 13 13 N 1.30868 * 107.86466 * 0.34887 * 11 10 9 14 14 N 1.28446 * 110.92159 * 359.77876 * 13 11 10 15 15 C 1.46503 * 125.18504 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46979 * 276.03051 * 15 14 13 17 17 C 1.46925 * 118.73646 * 306.38496 * 6 5 3 18 18 C 1.53194 * 108.77811 * 53.61281 * 17 6 5 19 19 C 1.53042 * 109.33534 * 305.37963 * 18 17 6 20 20 H 1.08997 * 109.43715 * 301.31489 * 19 18 17 21 21 N 1.46499 * 109.48186 * 181.34761 * 19 18 17 22 22 C 1.36939 * 119.99527 * 84.92194 * 21 19 18 23 23 H 1.08001 * 120.00193 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99766 * 179.97438 * 22 21 19 25 25 N 1.31616 * 119.99895 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00202 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47329 * 89.99536 * 26 24 22 28 28 H 1.48499 * 109.47141 * 210.00124 * 26 24 22 29 29 H 1.48503 * 109.46955 * 330.00053 * 26 24 22 30 30 H 1.09010 * 109.46949 * 299.99752 * 1 2 3 31 31 H 1.08997 * 109.47509 * 59.99674 * 1 2 3 32 32 H 1.08999 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46763 * 240.00433 * 2 1 3 34 34 H 1.08997 * 109.47509 * 120.00326 * 2 1 3 35 35 H 1.09000 * 109.58534 * 294.37193 * 5 3 2 36 36 H 1.09002 * 109.58877 * 54.65508 * 5 3 2 37 37 H 1.07993 * 127.32328 * 359.97438 * 10 9 7 38 38 H 1.08995 * 109.47075 * 270.26438 * 12 11 10 39 39 H 1.09005 * 109.47192 * 30.26671 * 12 11 10 40 40 H 1.09002 * 109.47112 * 150.26013 * 12 11 10 41 41 H 1.09001 * 109.47360 * 36.02916 * 15 14 13 42 42 H 1.08999 * 109.47278 * 156.03018 * 15 14 13 43 43 H 1.09000 * 109.47761 * 176.97545 * 16 15 14 44 44 H 1.09004 * 109.47328 * 296.97356 * 16 15 14 45 45 H 1.09001 * 109.47500 * 56.97650 * 16 15 14 46 46 H 1.09003 * 109.58989 * 173.40166 * 17 6 5 47 47 H 1.09001 * 109.58784 * 293.68096 * 17 6 5 48 48 H 1.08998 * 109.49705 * 65.31195 * 18 17 6 49 49 H 1.08998 * 109.49932 * 185.38368 * 18 17 6 50 50 H 0.96999 * 120.00149 * 264.91474 * 21 19 18 51 51 H 0.97005 * 120.00213 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6365 2.1274 1.3095 6 7 2.2429 3.4651 1.3499 7 6 1.4833 4.5572 1.5657 8 8 0.2719 4.4568 1.6076 9 6 2.1195 5.8713 1.7505 10 6 3.4018 6.1161 2.2107 11 6 3.5364 7.5063 2.2085 12 6 4.7610 8.2797 2.6247 13 7 2.4089 8.0182 1.7851 14 7 1.5606 7.0940 1.5091 15 6 0.2008 7.3174 1.0117 16 6 -0.7355 7.5884 2.1911 17 6 3.6934 3.5894 1.1513 18 6 4.0739 2.8881 -0.1565 19 6 3.5654 1.4450 -0.1241 20 1 4.0000 0.9263 0.7303 21 7 3.9555 0.7616 -1.3599 22 6 5.1937 0.1858 -1.4621 23 1 5.8828 0.2358 -0.6320 24 6 5.5633 -0.4621 -2.6328 25 7 6.7536 -1.0151 -2.7313 26 14 4.3713 -0.5492 -4.0685 27 1 4.5717 0.6285 -4.9505 28 1 4.6166 -1.7936 -4.8408 29 1 2.9777 -0.5518 -3.5553 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.5512 2.2168 1.3559 36 1 1.9910 1.5375 2.1548 37 1 4.1409 5.3871 2.5082 38 1 4.7080 8.4976 3.6914 39 1 5.6524 7.6872 2.4187 40 1 4.8084 9.2138 2.0650 41 1 0.1961 8.1755 0.3395 42 1 -0.1392 6.4326 0.4737 43 1 -1.7359 7.8075 1.8180 44 1 -0.7723 6.7097 2.8351 45 1 -0.3653 8.4409 2.7605 46 1 3.9653 4.6434 1.0932 47 1 4.2177 3.1222 1.9849 48 1 3.6208 3.4142 -0.9966 49 1 5.1582 2.8898 -0.2681 50 1 3.3368 0.7170 -2.1055 51 1 7.0117 -1.4683 -3.5493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:54 Heat of formation + Delta-G solvation = 54.769418 kcal Electronic energy + Delta-G solvation = -30271.127366 eV Core-core repulsion = 26400.600369 eV Total energy + Delta-G solvation = -3870.526997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.76545 -40.05566 -37.91461 -35.42813 -34.66224 -33.96557 -31.86159 -31.54496 -31.26086 -29.96267 -28.74739 -27.65826 -25.68943 -24.11008 -23.70760 -22.94030 -21.87815 -21.20535 -20.87694 -19.84435 -18.78107 -17.68247 -17.19505 -16.70775 -16.27777 -15.80031 -15.15114 -15.01232 -14.65056 -14.39674 -14.14247 -13.96976 -13.75093 -13.51544 -13.40910 -13.35578 -13.11433 -12.90938 -12.78748 -12.57755 -12.50642 -12.37010 -12.23661 -11.90361 -11.80442 -11.52839 -11.45020 -11.07188 -11.05913 -10.84079 -10.67534 -10.47311 -10.36262 -10.24333 -10.06594 -9.78844 -9.61113 -9.19692 -9.02950 -8.88853 -8.61557 -7.30526 -5.81161 -3.16621 1.18245 2.16217 2.40112 2.94190 3.06174 3.33859 3.37266 3.42742 4.21354 4.27397 4.55257 4.72190 4.72593 4.87726 4.92718 4.98281 4.99360 5.11669 5.16147 5.24171 5.31404 5.35643 5.43023 5.44724 5.47531 5.47968 5.49806 5.54291 5.59644 5.68108 5.72522 5.82318 5.83442 5.88837 5.96003 6.00266 6.06244 6.19583 6.23798 6.29511 6.35026 6.41587 6.50753 6.62108 6.67475 6.75634 6.90923 7.28839 7.89902 7.94374 8.02316 8.37952 9.16092 9.88951 10.08738 11.37107 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.003344 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.946718 B = 8371.994459 C = 9536.652223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.122 3.878 6 N -0.588 5.588 7 C 0.588 3.412 8 O -0.546 6.546 9 C -0.027 4.027 10 C -0.193 4.193 11 C 0.022 3.978 12 C -0.066 4.066 13 N -0.279 5.279 14 N -0.257 5.257 15 C 0.118 3.882 16 C -0.163 4.163 17 C 0.083 3.917 18 C -0.150 4.150 19 C 0.188 3.812 20 H 0.058 0.942 21 N -0.745 5.745 22 C -0.242 4.242 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.169 0.831 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 15.532 11.518 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.319 5.319 7 C 0.375 3.625 8 O -0.425 6.425 9 C -0.156 4.156 10 C -0.222 4.222 11 C -0.135 4.135 12 C -0.125 4.125 13 N -0.113 5.113 14 N -0.044 5.044 15 C -0.002 4.002 16 C -0.221 4.221 17 C -0.039 4.039 18 C -0.191 4.191 19 C 0.078 3.922 20 H 0.076 0.924 21 N -0.387 5.387 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.186 0.814 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.301 16.385 11.281 23.389 hybrid contribution -0.275 -0.914 -1.093 1.451 sum -12.576 15.471 10.188 22.390 Atomic orbital electron populations 1.21853 0.96628 1.01205 1.01410 1.21466 0.94542 0.95603 1.03530 1.21832 0.97746 0.96310 0.96920 0.91252 1.21797 0.99549 0.80743 0.97957 1.47845 1.08954 1.06135 1.69000 1.16950 0.85972 0.82488 0.77059 1.90772 1.13264 1.85933 1.52539 1.21405 0.95210 0.88165 1.10777 1.22365 0.95656 0.96443 1.07740 1.22039 0.94908 0.92474 1.04047 1.20087 0.91770 0.99255 1.01371 1.73091 1.00573 1.18984 1.18620 1.45730 1.12018 1.01764 1.44898 1.22059 0.75817 1.04607 0.97720 1.22076 0.98979 1.02965 0.98055 1.22562 0.78844 1.03234 0.99263 1.22638 1.02724 0.98587 0.95193 1.20176 0.90568 0.90745 0.90706 0.92441 1.42770 1.16485 1.66307 1.13095 1.19047 0.90384 1.27309 1.00469 0.89157 1.24648 0.96386 1.00253 0.97657 1.69692 1.19262 1.41550 1.27573 0.86608 0.81156 0.77332 0.83746 1.21199 1.21784 1.20290 0.92956 0.93099 0.93015 0.90358 0.91863 0.88878 0.91026 0.81398 0.90937 0.90342 0.91070 0.88585 0.87372 0.90255 0.91206 0.91873 0.88157 0.90912 0.92387 0.89861 0.80635 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.15 0.36 -1.55 16 2 C -0.11 -1.66 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.61 1.92 -90.50 -0.17 -1.78 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.60 5.34 -3.71 -0.02 1.58 16 6 N -0.59 -7.80 2.97 -174.13 -0.52 -8.32 16 7 C 0.59 8.35 7.46 -12.64 -0.09 8.26 16 8 O -0.55 -8.66 14.71 5.25 0.08 -8.58 16 9 C -0.03 -0.36 6.49 -82.06 -0.53 -0.89 16 10 C -0.19 -2.23 8.56 -38.98 -0.33 -2.56 16 11 C 0.02 0.25 7.22 -82.47 -0.60 -0.35 16 12 C -0.07 -0.53 10.45 36.00 0.38 -0.15 16 13 N -0.28 -3.61 11.90 33.64 0.40 -3.21 16 14 N -0.26 -3.27 3.35 -57.14 -0.19 -3.46 16 15 C 0.12 1.21 6.54 -4.04 -0.03 1.19 16 16 C -0.16 -1.47 10.24 37.16 0.38 -1.09 16 17 C 0.08 1.03 5.21 -3.71 -0.02 1.01 16 18 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 19 C 0.19 3.27 2.19 -67.88 -0.15 3.12 16 20 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 21 N -0.74 -16.37 4.14 -53.38 -0.22 -16.59 16 22 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.52 13.97 55.49 0.78 -27.74 16 26 Si 0.88 21.60 27.73 -169.99 -4.71 16.88 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 30 H 0.05 0.60 6.70 -51.92 -0.35 0.25 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.36 7.22 -51.93 -0.37 0.98 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.26 5.72 -51.93 -0.30 0.96 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.17 1.58 6.21 -52.49 -0.33 1.25 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.11 1.19 6.68 -51.93 -0.35 0.84 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 1.15 3.99 -51.93 -0.21 0.94 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.36 8.01 5.37 -40.82 -0.22 7.79 16 51 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -32.13 396.13 -8.27 -40.40 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.47 Total: 8.69 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.37 Total: -4.02 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.25 Total: -59.33 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.13 -8.27 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.165 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds