Wall clock time and date at job start Sat Apr 11 2020 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 H 1.08996 * 109.52358 * 304.91667 * 3 2 1 5 5 C 1.53190 * 109.49497 * 64.99911 * 3 2 1 6 6 N 1.46931 * 108.88777 * 174.65720 * 5 3 2 7 7 C 1.34777 * 120.63049 * 126.30044 * 6 5 3 8 8 O 1.21633 * 119.99825 * 353.15091 * 7 6 5 9 9 C 1.47160 * 120.00179 * 173.15288 * 7 6 5 10 10 C 1.38403 * 126.88356 * 335.84750 * 9 7 6 11 11 C 1.39670 * 105.35730 * 180.02562 * 10 9 7 12 12 C 1.50708 * 126.06865 * 180.02562 * 11 10 9 13 13 N 1.30868 * 107.86503 * 359.97438 * 11 10 9 14 14 N 1.28443 * 110.92335 * 359.71903 * 13 11 10 15 15 C 1.46498 * 125.18973 * 180.27785 * 14 13 11 16 16 C 1.53000 * 109.47027 * 271.23050 * 15 14 13 17 17 C 1.46924 * 118.74184 * 306.31466 * 6 5 3 18 18 C 1.53198 * 108.77042 * 53.61421 * 17 6 5 19 19 C 1.53041 * 109.30996 * 305.36142 * 18 17 6 20 20 H 1.09006 * 109.45442 * 181.37438 * 19 18 17 21 21 N 1.46500 * 109.46297 * 301.34417 * 19 18 17 22 22 C 1.36928 * 120.00218 * 275.00410 * 21 19 18 23 23 H 1.08010 * 120.00369 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00010 * 180.02562 * 22 21 19 25 25 N 1.31616 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00025 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47272 * 59.99713 * 26 24 22 28 28 H 1.48495 * 109.47237 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47178 * 299.99642 * 26 24 22 30 30 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47458 * 299.99890 * 1 2 3 32 32 H 1.08999 * 109.47253 * 60.00399 * 1 2 3 33 33 H 1.09002 * 109.47456 * 239.99331 * 2 1 3 34 34 H 1.09010 * 109.47095 * 120.00092 * 2 1 3 35 35 H 1.08994 * 109.58783 * 54.80223 * 5 3 2 36 36 H 1.09000 * 109.58623 * 294.51276 * 5 3 2 37 37 H 1.07995 * 127.32040 * 0.02562 * 10 9 7 38 38 H 1.09001 * 109.47097 * 89.99869 * 12 11 10 39 39 H 1.08996 * 109.47165 * 209.99558 * 12 11 10 40 40 H 1.09000 * 109.46981 * 329.99778 * 12 11 10 41 41 H 1.09008 * 109.47139 * 31.22733 * 15 14 13 42 42 H 1.08999 * 109.47209 * 151.22700 * 15 14 13 43 43 H 1.08994 * 109.47585 * 58.54486 * 16 15 14 44 44 H 1.09000 * 109.46708 * 178.54414 * 16 15 14 45 45 H 1.09003 * 109.46701 * 298.53979 * 16 15 14 46 46 H 1.08997 * 109.58606 * 173.39226 * 17 6 5 47 47 H 1.08996 * 109.59096 * 293.83007 * 17 6 5 48 48 H 1.09003 * 109.49993 * 65.31407 * 18 17 6 49 49 H 1.08999 * 109.49644 * 185.38217 * 18 17 6 50 50 H 0.97001 * 119.99360 * 94.99833 * 21 19 18 51 51 H 0.96995 * 119.99909 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6350 2.1279 1.3088 6 7 2.2388 3.4667 1.3512 7 6 1.4764 4.5575 1.5646 8 8 0.2649 4.4552 1.6000 9 6 2.1096 5.8722 1.7547 10 6 3.3972 6.1176 2.1991 11 6 3.5255 7.5083 2.2114 12 6 4.7517 8.2826 2.6214 13 7 2.3924 8.0197 1.8026 14 7 1.5465 7.0948 1.5219 15 6 0.1840 7.3172 1.0316 16 6 -0.7694 7.4555 2.2202 17 6 3.6895 3.5940 1.1563 18 6 4.0745 2.8939 -0.1509 19 6 3.5688 1.4498 -0.1195 20 1 3.8627 0.9422 -1.0383 21 7 4.1510 0.7535 1.0304 22 6 5.3897 0.1791 0.9277 23 1 5.9375 0.2389 -0.0013 24 6 5.9412 -0.4811 2.0172 25 7 5.2736 -0.5545 3.1492 26 14 7.6307 -1.2654 1.8769 27 1 8.6343 -0.2228 1.5436 28 1 7.9898 -1.9022 3.1694 29 1 7.6115 -2.2943 0.8062 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.9907 1.5397 2.1546 36 1 0.5494 2.2150 1.3549 37 1 4.1439 5.3886 2.4772 38 1 5.3860 8.4466 1.7503 39 1 4.4518 9.2439 3.0385 40 1 5.3042 7.7174 3.3720 41 1 0.1567 8.2296 0.4358 42 1 -0.1231 6.4718 0.4159 43 1 -0.4473 8.2847 2.8499 44 1 -1.7788 7.6467 1.8558 45 1 -0.7616 6.5334 2.8014 46 1 3.9594 4.6485 1.0992 47 1 4.2127 3.1252 1.9897 48 1 3.6225 3.4195 -0.9920 49 1 5.1591 2.8977 -0.2598 50 1 3.6590 0.6996 1.8647 51 1 5.6590 -1.0154 3.9105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:59 Heat of formation + Delta-G solvation = 53.822484 kcal Electronic energy + Delta-G solvation = -30670.459788 eV Core-core repulsion = 26799.891729 eV Total energy + Delta-G solvation = -3870.568059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61311 -39.88344 -37.77075 -35.19803 -34.34449 -33.78195 -31.75529 -31.39008 -31.08981 -29.40435 -28.36650 -27.51384 -25.55043 -23.93798 -23.69273 -23.29720 -22.21165 -21.05245 -20.78560 -19.02258 -18.33086 -17.38428 -17.00399 -16.49447 -16.10154 -15.59971 -14.99236 -14.77336 -14.54542 -14.32613 -14.02428 -13.78555 -13.71082 -13.36453 -13.29965 -13.18155 -13.01682 -12.89530 -12.62861 -12.42059 -12.39386 -12.12610 -12.10471 -11.71876 -11.47916 -11.35715 -11.10303 -10.99061 -10.82752 -10.78507 -10.50817 -10.30768 -10.28350 -10.21428 -9.84326 -9.79287 -9.56453 -9.03218 -8.95282 -8.77026 -8.27964 -6.99359 -5.80568 -3.09026 1.35282 2.32584 2.54387 3.18068 3.27328 3.40922 3.46394 3.47052 4.36403 4.47588 4.56110 4.84211 4.85371 5.02897 5.07840 5.10700 5.24397 5.32425 5.34468 5.46492 5.52231 5.53918 5.57058 5.57909 5.60622 5.66437 5.66618 5.76836 5.81418 5.82579 5.88449 5.96494 5.97504 6.06251 6.12883 6.17614 6.31562 6.35612 6.40152 6.50020 6.54472 6.60828 6.69359 6.74836 6.76631 6.91756 6.97026 7.57783 7.66807 8.06055 8.23721 8.37800 9.49581 10.05816 10.41101 11.41670 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.003842 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.367062 B = 7286.894205 C = 9016.513143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.581 5.581 7 C 0.585 3.415 8 O -0.552 6.552 9 C -0.025 4.025 10 C -0.192 4.192 11 C 0.020 3.980 12 C -0.066 4.066 13 N -0.282 5.282 14 N -0.259 5.259 15 C 0.121 3.879 16 C -0.164 4.164 17 C 0.090 3.910 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.171 0.829 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.076 0.924 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 14.123 -4.423 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.312 5.312 7 C 0.372 3.628 8 O -0.431 6.431 9 C -0.153 4.153 10 C -0.220 4.220 11 C -0.136 4.136 12 C -0.124 4.124 13 N -0.116 5.116 14 N -0.047 5.047 15 C 0.001 3.999 16 C -0.222 4.222 17 C -0.032 4.032 18 C -0.190 4.190 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.188 0.812 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.169 14.995 -4.708 18.196 hybrid contribution 1.315 -1.290 0.383 1.881 sum -7.854 13.706 -4.325 16.378 Atomic orbital electron populations 1.21853 0.96805 1.01056 1.01329 1.21410 0.94261 0.95656 1.03445 1.21798 0.97476 0.96125 0.96834 0.91581 1.21763 0.98849 0.80859 0.98676 1.47816 1.09020 1.05977 1.68391 1.16937 0.85986 0.82491 0.77380 1.90755 1.13280 1.85978 1.53107 1.21443 0.94984 0.88177 1.10731 1.22463 0.95675 0.96404 1.07493 1.22023 0.94724 0.92518 1.04356 1.20078 0.91734 0.99051 1.01545 1.73062 1.00661 1.19011 1.18817 1.45706 1.11897 1.01807 1.45249 1.21993 0.75790 1.04283 0.97804 1.22091 0.98716 1.03435 0.97952 1.22448 0.78663 1.01983 1.00077 1.22520 1.01856 0.99115 0.95477 1.20289 0.89634 0.90717 0.92633 0.93133 1.42451 1.18936 1.64077 1.10561 1.19168 0.93540 1.27171 0.97101 0.91327 1.24684 0.98475 1.01412 0.96019 1.69631 1.38095 1.48028 1.02266 0.86328 0.84420 0.79203 0.76554 1.21348 1.21823 1.21405 0.93138 0.92796 0.93395 0.91971 0.90431 0.90376 0.89422 0.81188 0.90862 0.91231 0.90440 0.88645 0.87696 0.92062 0.90374 0.90877 0.88900 0.89411 0.93464 0.90585 0.78122 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.70 5.21 -26.73 -0.14 -1.84 16 3 C -0.10 -1.62 2.15 -90.34 -0.19 -1.81 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.97 5.03 -3.71 -0.02 1.95 16 6 N -0.58 -9.34 2.97 -174.13 -0.52 -9.85 16 7 C 0.59 9.57 7.48 -12.64 -0.09 9.48 16 8 O -0.55 -9.75 14.35 5.25 0.08 -9.68 16 9 C -0.02 -0.38 6.51 -82.06 -0.53 -0.91 16 10 C -0.19 -2.66 8.57 -38.99 -0.33 -3.00 16 11 C 0.02 0.27 7.22 -82.46 -0.60 -0.33 16 12 C -0.07 -0.62 10.45 36.01 0.38 -0.25 16 13 N -0.28 -4.00 11.90 33.64 0.40 -3.60 16 14 N -0.26 -3.64 3.35 -57.14 -0.19 -3.83 16 15 C 0.12 1.36 6.40 -4.04 -0.03 1.33 16 16 C -0.16 -1.69 10.24 37.16 0.38 -1.31 16 17 C 0.09 1.42 4.95 -3.71 -0.02 1.40 16 18 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 19 C 0.18 3.21 2.54 -67.73 -0.17 3.04 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.95 3.73 -53.22 -0.20 -16.15 16 22 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 23 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 26 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.71 6.69 -51.93 -0.35 0.36 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.40 7.71 -51.92 -0.40 1.00 16 35 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 36 H 0.09 1.42 5.71 -51.93 -0.30 1.12 16 37 H 0.17 2.19 6.11 -52.49 -0.32 1.87 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 42 H 0.10 1.22 6.94 -51.93 -0.36 0.86 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 46 H 0.09 1.31 3.92 -51.93 -0.20 1.11 16 47 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.38 9.15 5.95 -40.82 -0.24 8.91 16 51 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -29.63 394.87 -8.55 -38.17 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.36 Total: 11.41 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.41 Total: -3.05 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.22 Total: -59.19 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.63 -8.55 -38.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.996 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds