Wall clock time and date at job start Sat Apr 11 2020 04:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 H 1.08996 * 109.52358 * 304.91667 * 3 2 1 5 5 C 1.53190 * 109.49497 * 64.99911 * 3 2 1 6 6 N 1.46931 * 108.88777 * 174.65720 * 5 3 2 7 7 C 1.34777 * 120.63049 * 126.30044 * 6 5 3 8 8 O 1.21633 * 119.99825 * 353.15091 * 7 6 5 9 9 C 1.47160 * 120.00179 * 173.15288 * 7 6 5 10 10 C 1.38403 * 126.88356 * 335.84750 * 9 7 6 11 11 C 1.39670 * 105.35730 * 180.02562 * 10 9 7 12 12 C 1.50708 * 126.06865 * 180.02562 * 11 10 9 13 13 N 1.30868 * 107.86503 * 359.97438 * 11 10 9 14 14 N 1.28443 * 110.92335 * 359.71903 * 13 11 10 15 15 C 1.46498 * 125.18973 * 180.27785 * 14 13 11 16 16 C 1.53000 * 109.47027 * 271.23050 * 15 14 13 17 17 C 1.46924 * 118.74184 * 306.31466 * 6 5 3 18 18 C 1.53198 * 108.77042 * 53.61421 * 17 6 5 19 19 C 1.53041 * 109.30996 * 305.36142 * 18 17 6 20 20 H 1.09006 * 109.45442 * 181.37438 * 19 18 17 21 21 N 1.46500 * 109.46297 * 301.34417 * 19 18 17 22 22 C 1.36928 * 120.00218 * 275.00410 * 21 19 18 23 23 H 1.08010 * 120.00369 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00010 * 180.02562 * 22 21 19 25 25 N 1.31616 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00025 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47272 * 59.99713 * 26 24 22 28 28 H 1.48495 * 109.47237 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47178 * 299.99642 * 26 24 22 30 30 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47458 * 299.99890 * 1 2 3 32 32 H 1.08999 * 109.47253 * 60.00399 * 1 2 3 33 33 H 1.09002 * 109.47456 * 239.99331 * 2 1 3 34 34 H 1.09010 * 109.47095 * 120.00092 * 2 1 3 35 35 H 1.08994 * 109.58783 * 54.80223 * 5 3 2 36 36 H 1.09000 * 109.58623 * 294.51276 * 5 3 2 37 37 H 1.07995 * 127.32040 * 0.02562 * 10 9 7 38 38 H 1.09001 * 109.47097 * 89.99869 * 12 11 10 39 39 H 1.08996 * 109.47165 * 209.99558 * 12 11 10 40 40 H 1.09000 * 109.46981 * 329.99778 * 12 11 10 41 41 H 1.09008 * 109.47139 * 31.22733 * 15 14 13 42 42 H 1.08999 * 109.47209 * 151.22700 * 15 14 13 43 43 H 1.08994 * 109.47585 * 58.54486 * 16 15 14 44 44 H 1.09000 * 109.46708 * 178.54414 * 16 15 14 45 45 H 1.09003 * 109.46701 * 298.53979 * 16 15 14 46 46 H 1.08997 * 109.58606 * 173.39226 * 17 6 5 47 47 H 1.08996 * 109.59096 * 293.83007 * 17 6 5 48 48 H 1.09003 * 109.49993 * 65.31407 * 18 17 6 49 49 H 1.08999 * 109.49644 * 185.38217 * 18 17 6 50 50 H 0.97001 * 119.99360 * 94.99833 * 21 19 18 51 51 H 0.96995 * 119.99909 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6350 2.1279 1.3088 6 7 2.2388 3.4667 1.3512 7 6 1.4764 4.5575 1.5646 8 8 0.2649 4.4552 1.6000 9 6 2.1096 5.8722 1.7547 10 6 3.3972 6.1176 2.1991 11 6 3.5255 7.5083 2.2114 12 6 4.7517 8.2826 2.6214 13 7 2.3924 8.0197 1.8026 14 7 1.5465 7.0948 1.5219 15 6 0.1840 7.3172 1.0316 16 6 -0.7694 7.4555 2.2202 17 6 3.6895 3.5940 1.1563 18 6 4.0745 2.8939 -0.1509 19 6 3.5688 1.4498 -0.1195 20 1 3.8627 0.9422 -1.0383 21 7 4.1510 0.7535 1.0304 22 6 5.3897 0.1791 0.9277 23 1 5.9375 0.2389 -0.0013 24 6 5.9412 -0.4811 2.0172 25 7 5.2736 -0.5545 3.1492 26 14 7.6307 -1.2654 1.8769 27 1 8.6343 -0.2228 1.5436 28 1 7.9898 -1.9022 3.1694 29 1 7.6115 -2.2943 0.8062 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.9907 1.5397 2.1546 36 1 0.5494 2.2150 1.3549 37 1 4.1439 5.3886 2.4772 38 1 5.3860 8.4466 1.7503 39 1 4.4518 9.2439 3.0385 40 1 5.3042 7.7174 3.3720 41 1 0.1567 8.2296 0.4358 42 1 -0.1231 6.4718 0.4159 43 1 -0.4473 8.2847 2.8499 44 1 -1.7788 7.6467 1.8558 45 1 -0.7616 6.5334 2.8014 46 1 3.9594 4.6485 1.0992 47 1 4.2127 3.1252 1.9897 48 1 3.6225 3.4195 -0.9920 49 1 5.1591 2.8977 -0.2598 50 1 3.6590 0.6996 1.8647 51 1 5.6590 -1.0154 3.9105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037928126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:08:58 Heat of formation + Delta-G solvation = 37.715342 kcal Electronic energy + Delta-G solvation = -30671.158246 eV Core-core repulsion = 26799.891729 eV Total energy + Delta-G solvation = -3871.266518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.67587 -41.21330 -39.15349 -36.33983 -35.57323 -35.35507 -33.41664 -32.34766 -32.15540 -31.00487 -29.73688 -28.38370 -26.93570 -25.49646 -25.17974 -24.36746 -23.35947 -22.17814 -22.09143 -20.31585 -19.56543 -19.23460 -18.24605 -17.71374 -17.22930 -16.82144 -16.53288 -16.07446 -15.88870 -15.70242 -15.43522 -15.12991 -14.78550 -14.71393 -14.58159 -14.32184 -14.15053 -14.05937 -13.87050 -13.58657 -13.24487 -13.19649 -13.02008 -12.94580 -12.88087 -12.78243 -12.64799 -12.35434 -12.25867 -12.15908 -12.11421 -11.82236 -11.59418 -11.55734 -11.43928 -11.16292 -11.09349 -10.79046 -10.14318 -9.82154 -9.63091 -8.88698 -7.85236 -5.11152 0.19386 1.28122 1.51178 1.52811 1.53264 1.59113 1.97814 2.03834 2.62745 3.25617 3.44326 3.48627 3.78527 3.86882 3.95447 3.99545 4.03919 4.08686 4.11376 4.24245 4.25928 4.33941 4.41024 4.44516 4.46882 4.59089 4.62938 4.68503 4.70609 4.75695 4.83475 4.89440 4.91158 4.99229 5.02705 5.04729 5.12759 5.13113 5.18106 5.22733 5.24683 5.29898 5.40988 5.51686 5.54463 5.62314 5.65520 5.77853 6.27870 6.36130 6.89181 7.06175 7.44353 8.19904 8.44136 9.37596 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.003842 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.367062 B = 7286.894205 C = 9016.513143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.127 3.873 6 N -0.582 5.582 7 C 0.586 3.414 8 O -0.567 6.567 9 C -0.045 4.045 10 C -0.196 4.196 11 C 0.017 3.983 12 C -0.065 4.065 13 N -0.291 5.291 14 N -0.260 5.260 15 C 0.114 3.886 16 C -0.156 4.156 17 C 0.100 3.900 18 C -0.141 4.141 19 C 0.172 3.828 20 H 0.047 0.953 21 N -0.722 5.722 22 C -0.228 4.228 23 H 0.074 0.926 24 C -0.069 4.069 25 N -0.967 5.967 26 Si 0.961 3.039 27 H -0.279 1.279 28 H -0.303 1.303 29 H -0.284 1.284 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.176 0.824 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.113 0.887 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.374 0.626 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 15.822 -5.953 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.102 0.898 5 C 0.005 3.995 6 N -0.312 5.312 7 C 0.374 3.626 8 O -0.448 6.448 9 C -0.173 4.173 10 C -0.224 4.224 11 C -0.139 4.139 12 C -0.123 4.123 13 N -0.125 5.125 14 N -0.048 5.048 15 C -0.005 4.005 16 C -0.213 4.213 17 C -0.022 4.022 18 C -0.182 4.182 19 C 0.063 3.937 20 H 0.065 0.935 21 N -0.363 5.363 22 C -0.360 4.360 23 H 0.092 0.908 24 C -0.261 4.261 25 N -0.618 5.618 26 Si 0.792 3.208 27 H -0.205 1.205 28 H -0.230 1.230 29 H -0.210 1.210 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.193 0.807 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.131 0.869 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.207 0.793 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.272 16.723 -6.289 20.129 hybrid contribution 1.286 -1.753 0.809 2.319 sum -7.986 14.970 -5.480 17.830 Atomic orbital electron populations 1.21786 0.94681 1.01949 1.01910 1.21331 0.96099 0.95002 1.01867 1.21704 0.95803 0.96521 0.97044 0.89807 1.21621 0.98902 0.80918 0.98072 1.47803 1.09066 1.05854 1.68504 1.17105 0.85793 0.82926 0.76793 1.90739 1.13967 1.86318 1.53757 1.21372 0.95683 0.88062 1.12215 1.22614 0.95392 0.97157 1.07275 1.22588 0.95416 0.92443 1.03422 1.20220 0.90493 0.99123 1.02494 1.73075 1.01095 1.19155 1.19156 1.45994 1.12619 1.01325 1.44898 1.22234 0.74804 1.05177 0.98274 1.22031 1.00072 1.01885 0.97362 1.22339 0.78270 1.02829 0.98763 1.22399 1.01530 0.97773 0.96467 1.20496 0.91047 0.91312 0.90802 0.93478 1.42539 1.18113 1.64311 1.11380 1.19515 0.94277 1.25390 0.96778 0.90787 1.25325 1.01577 1.03121 0.96091 1.69785 1.39479 1.49739 1.02812 0.85399 0.81207 0.78434 0.75808 1.20550 1.22973 1.21046 0.92183 0.93069 0.91857 0.91924 0.93551 0.92754 0.89069 0.80670 0.89464 0.90413 0.89244 0.86237 0.88258 0.92129 0.87723 0.93588 0.86917 0.92074 0.91287 0.91195 0.79253 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.67 71.98 0.70 -2.95 16 2 C -0.10 -3.21 5.21 30.59 0.16 -3.05 16 3 C -0.09 -2.80 2.15 -10.61 -0.02 -2.83 16 4 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.13 4.16 5.03 86.36 0.43 4.60 16 6 N -0.58 -18.48 2.97 -823.08 -2.45 -20.93 16 7 C 0.59 18.86 7.48 86.59 0.65 19.51 16 8 O -0.57 -19.83 14.35 -4.13 -0.06 -19.89 16 9 C -0.04 -1.31 6.51 40.78 0.27 -1.04 16 10 C -0.20 -5.20 8.57 22.66 0.19 -5.01 16 11 C 0.02 0.43 7.22 43.05 0.31 0.74 16 12 C -0.07 -1.08 10.45 71.24 0.74 -0.33 16 13 N -0.29 -7.76 11.90 -47.49 -0.57 -8.32 16 14 N -0.26 -6.97 3.35 -334.69 -1.12 -8.09 16 15 C 0.11 2.38 6.40 86.38 0.55 2.94 16 16 C -0.16 -3.02 10.24 71.98 0.74 -2.28 16 17 C 0.10 3.08 4.95 86.36 0.43 3.51 16 18 C -0.14 -4.40 5.78 30.67 0.18 -4.22 16 19 C 0.17 6.12 2.54 45.12 0.11 6.23 16 20 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 21 N -0.72 -32.51 3.73 -322.30 -1.20 -33.71 16 22 C -0.23 -11.60 9.93 84.04 0.83 -10.77 16 23 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 24 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 25 N -0.97 -56.45 13.06 21.65 0.28 -56.16 16 26 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.30 6.69 -2.39 -0.02 1.29 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.71 7.71 -2.38 -0.02 1.69 16 35 H 0.05 2.05 6.64 -2.39 -0.02 2.04 16 36 H 0.09 2.93 5.71 -2.39 -0.01 2.92 16 37 H 0.18 4.36 6.11 -2.91 -0.02 4.34 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.10 2.19 6.94 -2.39 -0.02 2.18 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.04 1.14 7.68 -2.39 -0.02 1.13 16 46 H 0.11 3.06 3.92 -2.39 -0.01 3.05 16 47 H 0.06 2.25 7.74 -2.39 -0.02 2.23 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.37 18.44 5.95 -92.71 -0.55 17.89 16 51 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -63.76 394.87 4.03 -59.73 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.38 Total: 39.16 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 6.74 Total: 1.77 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.05 Total: -127.22 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.76 4.03 -59.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.445 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds