Wall clock time and date at job start Sat Apr 11 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47231 * 2 1 4 4 H 1.09005 * 109.49640 * 55.06303 * 3 2 1 5 5 C 1.53196 * 109.50108 * 295.00338 * 3 2 1 6 6 N 1.46922 * 108.77650 * 185.41194 * 5 3 2 7 7 C 1.34784 * 120.63174 * 233.58418 * 6 5 3 8 8 O 1.21601 * 119.99635 * 5.62410 * 7 6 5 9 9 C 1.47420 * 119.99932 * 185.62901 * 7 6 5 10 10 C 1.41294 * 126.41705 * 40.69423 * 9 7 6 11 11 N 1.30452 * 108.02131 * 179.97438 * 10 9 7 12 12 N 1.39928 * 108.89822 * 0.02562 * 11 10 9 13 13 C 1.46499 * 125.75470 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47445 * 89.97047 * 13 12 11 15 15 C 1.34264 * 108.49452 * 359.97438 * 12 11 10 16 16 C 1.50698 * 126.29189 * 179.97438 * 15 12 11 17 17 C 1.46930 * 118.74043 * 53.86399 * 6 5 3 18 18 C 1.53628 * 108.53865 * 306.09180 * 17 6 5 19 19 C 1.53035 * 109.50059 * 175.16259 * 3 2 1 20 20 H 1.09000 * 109.46008 * 61.29652 * 19 3 2 21 21 N 1.46500 * 109.46041 * 301.34152 * 19 3 2 22 22 C 1.36936 * 119.99918 * 154.99814 * 21 19 3 23 23 H 1.07997 * 120.00514 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99707 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00423 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00028 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47126 * 59.99662 * 26 24 22 28 28 H 1.48498 * 109.47160 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46904 * 300.00032 * 26 24 22 30 30 H 1.08998 * 109.46606 * 299.99807 * 1 2 3 31 31 H 1.08994 * 109.46877 * 59.99669 * 1 2 3 32 32 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46606 * 240.00193 * 2 1 3 34 34 H 1.08994 * 109.46877 * 120.00331 * 2 1 3 35 35 H 1.09007 * 109.58764 * 65.62341 * 5 3 2 36 36 H 1.08998 * 109.70352 * 305.27211 * 5 3 2 37 37 H 1.07997 * 125.98952 * 359.97438 * 10 9 7 38 38 H 1.09005 * 109.47245 * 209.97773 * 13 12 11 39 39 H 1.09006 * 109.46801 * 329.97022 * 13 12 11 40 40 H 1.08999 * 109.46515 * 60.00414 * 14 13 12 41 41 H 1.09004 * 109.47310 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.46874 * 300.00359 * 14 13 12 43 43 H 1.09003 * 109.46880 * 90.03243 * 16 15 12 44 44 H 1.09001 * 109.47316 * 210.02872 * 16 15 12 45 45 H 1.09003 * 109.47347 * 330.03445 * 16 15 12 46 46 H 1.08997 * 109.58924 * 65.91933 * 17 6 5 47 47 H 1.08992 * 109.58602 * 186.35097 * 17 6 5 48 48 H 1.09009 * 109.63321 * 294.86804 * 18 17 6 49 49 H 1.08997 * 109.43116 * 174.72861 * 18 17 6 50 50 H 0.96998 * 120.00083 * 334.99459 * 21 19 3 51 51 H 0.96993 * 120.00401 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1281 -1.3087 6 7 2.2416 3.4657 -1.3492 7 6 1.4817 4.5580 -1.5636 8 8 0.2716 4.4545 -1.6237 9 6 2.1176 5.8782 -1.7252 10 6 3.3012 6.1566 -2.4450 11 7 3.5373 7.4363 -2.3539 12 7 2.5315 8.0290 -1.5825 13 6 2.4359 9.4520 -1.2477 14 6 1.6236 10.1757 -2.3235 15 6 1.6681 7.0738 -1.2019 16 6 0.4353 7.2707 -0.3578 17 6 3.6931 3.5894 -1.1578 18 6 4.0742 2.8879 0.1548 19 6 3.5656 1.4449 0.1216 20 1 3.9989 0.9267 -0.7338 21 7 3.9579 0.7607 1.3562 22 6 5.1963 0.1849 1.4560 23 1 5.8837 0.2347 0.6246 24 6 5.5677 -0.4639 2.6257 25 7 4.7299 -0.5252 3.6389 26 14 7.2568 -1.2501 2.7617 27 1 8.3024 -0.2113 2.5800 28 1 7.4063 -1.8733 4.1013 29 1 7.4047 -2.2901 1.7120 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5497 2.2174 -1.3538 36 1 1.9888 1.5407 -2.1561 37 1 3.9046 5.4362 -2.9772 38 1 1.9430 9.5658 -0.2821 39 1 3.4365 9.8814 -1.1976 40 1 0.6230 9.7462 -2.3735 41 1 1.5529 11.2346 -2.0746 42 1 2.1165 10.0619 -3.2890 43 1 -0.4173 7.4813 -1.0034 44 1 0.2406 6.3657 0.2176 45 1 0.5910 8.1077 0.3230 46 1 4.2131 3.1178 -1.9916 47 1 3.9659 4.6432 -1.1032 48 1 3.6220 3.4138 0.9958 49 1 5.1586 2.8891 0.2649 50 1 3.3404 0.7155 2.1029 51 1 4.9896 -0.9782 4.4563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037950964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:09:19 Heat of formation + Delta-G solvation = 41.489222 kcal Electronic energy + Delta-G solvation = -29964.456170 eV Core-core repulsion = 26093.353301 eV Total energy + Delta-G solvation = -3871.102870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67384 -39.66418 -37.55767 -35.07522 -34.48428 -33.71515 -32.38507 -31.65364 -30.18008 -29.40130 -28.61208 -27.38122 -25.13326 -24.27783 -23.65387 -23.07195 -21.74830 -20.72984 -20.40410 -19.59113 -18.68639 -17.38652 -17.02584 -16.19128 -15.97382 -15.60552 -14.99136 -14.94392 -14.68408 -14.22545 -13.93409 -13.84199 -13.64090 -13.39817 -13.33473 -13.22964 -13.06795 -12.87220 -12.81258 -12.56982 -12.49037 -12.25484 -12.00238 -11.78574 -11.67903 -11.49465 -11.24447 -10.99354 -10.89238 -10.82033 -10.64138 -10.28920 -10.20889 -10.10877 -9.72857 -9.65283 -9.54526 -9.50519 -8.87110 -8.67933 -8.30257 -6.93500 -5.75529 -3.03835 1.47438 2.12663 2.17476 3.10709 3.43406 3.44097 3.48849 3.49416 4.15363 4.35137 4.53392 4.59293 4.63384 4.70650 4.86012 4.95304 5.12486 5.15698 5.23263 5.29238 5.31179 5.36788 5.43686 5.46757 5.53199 5.57938 5.62711 5.66503 5.69341 5.73961 5.76390 5.81824 5.96028 6.09216 6.19347 6.21975 6.28997 6.39569 6.42400 6.46094 6.52741 6.66567 6.69386 6.76618 6.89382 7.01859 7.12082 7.43408 7.66572 7.70275 8.41255 8.42918 9.54192 10.12337 10.47227 11.46936 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.002995 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.963152 B = 9345.519721 C =10544.005724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.595 3.405 8 O -0.552 6.552 9 C -0.286 4.286 10 C 0.084 3.916 11 N -0.299 5.299 12 N -0.361 5.361 13 C 0.124 3.876 14 C -0.170 4.170 15 C 0.145 3.855 16 C -0.093 4.093 17 C 0.103 3.897 18 C -0.149 4.149 19 C 0.184 3.816 20 H 0.047 0.953 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.190 0.810 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 18.108 -11.334 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.332 5.332 7 C 0.384 3.616 8 O -0.431 6.431 9 C -0.301 4.301 10 C -0.104 4.104 11 N -0.118 5.118 12 N -0.142 5.142 13 C 0.004 3.996 14 C -0.228 4.228 15 C 0.014 3.986 16 C -0.151 4.151 17 C -0.020 4.020 18 C -0.190 4.190 19 C 0.073 3.927 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.207 0.793 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.218 0.782 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.629 19.067 -11.666 23.618 hybrid contribution 0.537 -1.080 0.639 1.365 sum -7.092 17.987 -11.026 22.258 Atomic orbital electron populations 1.21841 0.96845 1.00952 1.01316 1.21449 0.94344 0.95784 1.03406 1.21764 0.97571 0.96151 0.96831 0.91255 1.21733 0.99427 0.81327 0.97680 1.47964 1.08484 1.06442 1.70328 1.17269 0.85839 0.82730 0.75773 1.90726 1.13820 1.86121 1.52483 1.19966 1.02037 0.93870 1.14218 1.24043 0.94998 0.93301 0.98014 1.77159 1.10755 1.08903 1.14945 1.48477 1.18709 1.07456 1.39532 1.21754 1.03190 0.75546 0.99153 1.22186 1.00571 1.00676 0.99410 1.21382 0.93093 0.87858 0.96281 1.20536 0.92313 1.04062 0.98170 1.22113 0.79436 1.01543 0.98921 1.22734 1.01988 0.99110 0.95202 1.20192 0.90819 0.90538 0.91126 0.93466 1.42407 1.16432 1.64436 1.12781 1.19171 0.91836 1.27213 0.98556 0.91312 1.24716 0.98086 1.01614 0.96471 1.69645 1.35309 1.48433 1.04725 0.86313 0.84250 0.79191 0.76694 1.21370 1.21801 1.21324 0.93018 0.93188 0.93251 0.92489 0.89866 0.89140 0.91761 0.79335 0.88672 0.88327 0.91851 0.90309 0.91492 0.89349 0.88938 0.91047 0.91636 0.89975 0.92333 0.90775 0.78235 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.71 1.93 -90.50 -0.17 -1.88 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.79 5.33 -3.71 -0.02 1.77 16 6 N -0.60 -8.78 2.97 -173.77 -0.52 -9.30 16 7 C 0.60 9.16 7.30 -12.52 -0.09 9.07 16 8 O -0.55 -9.82 15.89 5.28 0.08 -9.74 16 9 C -0.29 -3.86 5.19 -105.07 -0.54 -4.41 16 10 C 0.08 1.02 9.63 -16.98 -0.16 0.86 16 11 N -0.30 -3.74 12.50 30.86 0.39 -3.36 16 12 N -0.36 -3.88 3.58 -56.60 -0.20 -4.08 16 13 C 0.12 0.83 6.93 -4.04 -0.03 0.80 16 14 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 15 C 0.15 1.71 7.00 -81.60 -0.57 1.14 16 16 C -0.09 -0.86 9.59 36.00 0.35 -0.51 16 17 C 0.10 1.41 5.52 -3.48 -0.02 1.39 16 18 C -0.15 -2.55 5.67 -26.39 -0.15 -2.70 16 19 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.22 4.33 -53.39 -0.23 -17.45 16 22 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 26 Si 0.90 22.08 29.55 -169.99 -5.02 17.05 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.62 7.22 -51.93 -0.37 1.24 16 35 H 0.09 1.39 5.71 -51.93 -0.30 1.09 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.19 1.86 7.38 -52.49 -0.39 1.47 16 38 H 0.10 0.44 7.02 -51.93 -0.36 0.07 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.01 7.75 -51.93 -0.40 0.60 16 45 H 0.07 0.46 7.05 -51.93 -0.37 0.09 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.05 4.79 -51.93 -0.25 0.80 16 48 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 49 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 50 H 0.38 9.94 7.51 -40.82 -0.31 9.63 16 51 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -32.68 401.32 -8.50 -41.18 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.56 Total: 8.98 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.21 Total: -2.38 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.16 Total: -61.15 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.68 -8.50 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037950964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.673 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds