Wall clock time and date at job start Sat Apr 11 2020 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 H 1.09001 * 109.50154 * 305.07500 * 3 2 1 5 5 C 1.53628 * 109.43043 * 65.29458 * 3 2 1 6 6 N 1.46924 * 108.54633 * 174.72355 * 5 3 2 7 7 C 1.34781 * 120.63201 * 126.36618 * 6 5 3 8 8 O 1.21277 * 119.99395 * 359.72357 * 7 6 5 9 9 C 1.50698 * 119.99659 * 179.72245 * 7 6 5 10 10 C 1.50703 * 109.46667 * 180.02562 * 9 7 6 11 11 C 1.39875 * 126.04085 * 90.02476 * 10 9 7 12 12 N 1.30829 * 108.20298 * 179.73658 * 11 10 9 13 13 N 1.40087 * 108.20855 * 359.97438 * 12 11 10 14 14 C 1.46500 * 126.04101 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47148 * 304.97690 * 14 13 12 16 16 C 1.34946 * 107.92254 * 0.02562 * 13 12 11 17 17 C 1.46926 * 118.73679 * 306.09622 * 6 5 3 18 18 C 1.53191 * 108.77917 * 53.85868 * 17 6 5 19 19 C 1.53039 * 109.50081 * 185.00198 * 3 2 1 20 20 H 1.09003 * 109.45362 * 58.66649 * 19 3 2 21 21 N 1.46494 * 109.45091 * 298.70343 * 19 3 2 22 22 C 1.36936 * 120.00165 * 154.93726 * 21 19 3 23 23 H 1.07999 * 120.00419 * 359.97438 * 22 21 19 24 24 C 1.38820 * 119.99808 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00168 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99518 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47014 * 59.99903 * 26 24 22 28 28 H 1.48506 * 109.46716 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47175 * 299.99557 * 26 24 22 30 30 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46653 * 299.99398 * 1 2 3 32 32 H 1.08991 * 109.47208 * 59.99337 * 1 2 3 33 33 H 1.09007 * 109.46653 * 240.00602 * 2 1 3 34 34 H 1.08998 * 109.47827 * 120.00501 * 2 1 3 35 35 H 1.09003 * 109.73967 * 54.98712 * 5 3 2 36 36 H 1.09002 * 109.66600 * 294.41532 * 5 3 2 37 37 H 1.08997 * 109.47603 * 60.00415 * 9 7 6 38 38 H 1.08999 * 109.47227 * 299.99513 * 9 7 6 39 39 H 1.08004 * 125.89587 * 359.75531 * 11 10 9 40 40 H 1.08996 * 109.47260 * 64.97437 * 14 13 12 41 41 H 1.08993 * 109.47563 * 184.97580 * 14 13 12 42 42 H 1.09002 * 109.47106 * 59.99663 * 15 14 13 43 43 H 1.08997 * 109.47677 * 179.97438 * 15 14 13 44 44 H 1.09005 * 109.47101 * 299.99982 * 15 14 13 45 45 H 1.07999 * 126.12479 * 180.02562 * 16 13 12 46 46 H 1.09000 * 109.58768 * 173.64400 * 17 6 5 47 47 H 1.09005 * 109.58537 * 294.06905 * 17 6 5 48 48 H 1.09007 * 109.49920 * 65.31334 * 18 17 6 49 49 H 1.08999 * 109.50266 * 185.38020 * 18 17 6 50 50 H 0.97004 * 119.99822 * 334.93690 * 21 19 3 51 51 H 0.97005 * 120.00060 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 -0.8409 5 6 1.6395 2.1261 1.3162 6 7 2.2452 3.4643 1.3509 7 6 1.4858 4.5564 1.5685 8 8 0.2899 4.4403 1.7329 9 6 2.1230 5.9215 1.6074 10 6 1.0643 6.9627 1.8647 11 6 0.6506 7.4233 3.1189 12 7 -0.2785 8.3261 2.9367 13 7 -0.4855 8.4693 1.5586 14 6 -1.4412 9.3778 0.9203 15 6 -2.8421 9.1185 1.4784 16 6 0.3504 7.6218 0.9229 17 6 3.6953 3.5887 1.1499 18 6 4.0737 2.8882 -0.1588 19 6 3.5652 1.4451 -0.1258 20 1 3.8545 0.9370 -1.0457 21 7 4.1505 0.7476 1.0218 22 6 5.3878 0.1707 0.9142 23 1 5.9320 0.2296 -0.0168 24 6 5.9422 -0.4907 2.0015 25 7 5.2788 -0.5629 3.1360 26 14 7.6297 -1.2782 1.8544 27 1 8.6339 -0.2375 1.5174 28 1 7.9925 -1.9159 3.1456 29 1 7.6043 -2.3068 0.7837 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8898 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 2.0010 1.5394 2.1607 36 1 0.5543 2.2149 1.3680 37 1 2.6075 6.1238 0.6522 38 1 2.8650 5.9535 2.4052 39 1 1.0325 7.0912 4.0730 40 1 -1.1541 10.4092 1.1244 41 1 -1.4417 9.2070 -0.1562 42 1 -2.8417 9.2894 2.5549 43 1 -3.5532 9.7947 1.0038 44 1 -3.1293 8.0870 1.2743 45 1 0.4348 7.4931 -0.1461 46 1 3.9670 4.6427 1.0920 47 1 4.2210 3.1188 1.9812 48 1 3.6191 3.4149 -0.9981 49 1 5.1577 2.8900 -0.2723 50 1 3.6616 0.6944 1.8579 51 1 5.6664 -1.0248 3.8959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037954672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:09:34 Heat of formation + Delta-G solvation = 45.217570 kcal Electronic energy + Delta-G solvation = -29645.125916 eV Core-core repulsion = 25774.184719 eV Total energy + Delta-G solvation = -3870.941196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29497 -39.84357 -37.70688 -34.76429 -34.34338 -33.72149 -31.96816 -31.63505 -30.27948 -29.39217 -28.61217 -26.96549 -24.65794 -23.91935 -23.67513 -23.42477 -20.88869 -20.76043 -20.54229 -19.26013 -18.10573 -17.37698 -17.04560 -16.71092 -15.63762 -15.50683 -15.19775 -14.64878 -14.46701 -14.31279 -14.08728 -13.95833 -13.56179 -13.45716 -13.27481 -13.20379 -12.95749 -12.79867 -12.48247 -12.41977 -12.34737 -12.18010 -11.80331 -11.67811 -11.58915 -11.32418 -11.05944 -10.94708 -10.78435 -10.70624 -10.52611 -10.27566 -10.23400 -10.17045 -9.75602 -9.53071 -9.46217 -9.42733 -8.91080 -8.36619 -8.11663 -6.96649 -5.78327 -3.06610 1.86211 2.42348 2.74559 2.99181 3.41897 3.47170 3.48037 3.51325 4.25941 4.57788 4.65289 4.73142 4.86404 4.91400 4.93827 5.09326 5.20399 5.22631 5.32306 5.38359 5.40830 5.43902 5.53138 5.58616 5.60762 5.68706 5.72528 5.74093 5.84196 5.86437 5.87772 5.95593 6.08875 6.14288 6.19113 6.24418 6.39309 6.42778 6.44551 6.59513 6.62544 6.69707 6.74328 6.81132 6.96126 6.97774 7.07449 7.67613 7.68424 7.85154 8.40228 8.56429 9.51787 10.09063 10.44116 11.43967 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002639 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.121463 B =10608.523102 C =11435.936812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.064 0.936 5 C 0.120 3.880 6 N -0.604 5.604 7 C 0.511 3.489 8 O -0.547 6.547 9 C -0.060 4.060 10 C -0.213 4.213 11 C 0.063 3.937 12 N -0.299 5.299 13 N -0.375 5.375 14 C 0.133 3.867 15 C -0.166 4.166 16 C 0.065 3.935 17 C 0.113 3.887 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.180 0.820 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.169 0.831 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 17.038 -7.096 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.337 5.337 7 C 0.299 3.701 8 O -0.425 6.425 9 C -0.101 4.101 10 C -0.225 4.225 11 C -0.123 4.123 12 N -0.119 5.119 13 N -0.158 5.158 14 C 0.012 3.988 15 C -0.224 4.224 16 C -0.081 4.081 17 C -0.009 4.009 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.067 0.933 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.197 0.803 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.186 0.814 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.952 17.820 -6.551 22.435 hybrid contribution 1.574 -1.161 -0.249 1.972 sum -10.378 16.659 -6.800 20.772 Atomic orbital electron populations 1.21848 0.96886 1.00956 1.01315 1.21419 0.94216 0.95903 1.03289 1.21811 0.97290 0.96012 0.97063 0.91725 1.21727 0.98696 0.81873 0.97982 1.48163 1.08660 1.06522 1.70338 1.20629 0.86991 0.86001 0.76466 1.90654 1.15079 1.86618 1.50186 1.19931 0.96374 0.89707 1.04076 1.19464 1.05765 1.04766 0.92520 1.23718 0.94921 0.94948 0.98753 1.77261 1.19958 1.22000 0.92731 1.48552 1.30691 1.32077 1.04484 1.21623 0.87987 0.92579 0.96631 1.22056 0.94686 1.02746 1.02872 1.22207 0.93325 0.93630 0.98917 1.21727 0.79343 0.99996 0.99855 1.22519 1.01693 0.99288 0.95576 1.20216 0.89784 0.90669 0.92533 0.93291 1.42469 1.19078 1.63935 1.10580 1.19165 0.93688 1.27009 0.96995 0.91360 1.24697 0.98507 1.01491 0.96050 1.69635 1.38157 1.48019 1.02225 0.86325 0.84420 0.79201 0.76541 1.21392 1.21839 1.21419 0.93228 0.92792 0.93463 0.92136 0.90519 0.90943 0.89792 0.88669 0.88243 0.80317 0.90025 0.88866 0.91114 0.90881 0.91928 0.81389 0.91142 0.89788 0.93411 0.90839 0.78069 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.68 37.16 0.36 -1.75 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.64 2.15 -90.27 -0.19 -1.84 16 4 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 2.02 5.05 -3.48 -0.02 2.00 16 6 N -0.60 -9.48 2.97 -172.50 -0.51 -9.99 16 7 C 0.51 7.93 7.69 -10.98 -0.08 7.84 16 8 O -0.55 -10.39 15.45 5.56 0.09 -10.30 16 9 C -0.06 -0.70 4.53 -29.03 -0.13 -0.83 16 10 C -0.21 -2.68 4.59 -105.05 -0.48 -3.16 16 11 C 0.06 0.83 11.96 -17.37 -0.21 0.62 16 12 N -0.30 -4.09 12.42 30.63 0.38 -3.71 16 13 N -0.38 -4.29 3.68 -61.37 -0.23 -4.52 16 14 C 0.13 0.99 7.23 -4.04 -0.03 0.96 16 15 C -0.17 -1.23 10.10 37.16 0.38 -0.86 16 16 C 0.07 0.74 11.36 -17.22 -0.20 0.54 16 17 C 0.11 1.70 6.08 -3.71 -0.02 1.68 16 18 C -0.15 -2.35 5.78 -26.61 -0.15 -2.50 16 19 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 20 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 21 N -0.72 -16.16 3.72 -53.39 -0.20 -16.36 16 22 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.84 13.06 55.49 0.72 -26.11 16 26 Si 0.90 21.58 29.55 -169.99 -5.02 16.56 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 35 H 0.07 1.37 6.63 -51.93 -0.34 1.03 16 36 H 0.08 1.46 5.73 -51.93 -0.30 1.16 16 37 H 0.10 0.91 7.69 -51.93 -0.40 0.51 16 38 H 0.10 1.03 7.94 -51.93 -0.41 0.62 16 39 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.07 0.83 5.93 -51.93 -0.31 0.53 16 47 H 0.08 1.51 7.74 -51.93 -0.40 1.11 16 48 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.38 9.34 5.93 -40.82 -0.24 9.10 16 51 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 403.34 15.07 6.08 6.08 Total: -1.00 -32.31 403.34 -8.64 -40.96 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -8.61 Total: 10.19 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.34 Total: -2.79 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.17 Total: -60.69 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.31 -8.64 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.175 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds