Wall clock time and date at job start Sat Apr 11 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46782 * 2 1 4 4 H 1.08996 * 109.49520 * 54.93336 * 3 2 1 5 5 C 1.52760 * 109.56296 * 294.96275 * 3 2 1 6 6 N 1.46921 * 109.00719 * 185.55436 * 5 3 2 7 7 C 1.34781 * 120.63250 * 233.58864 * 6 5 3 8 8 O 1.21282 * 119.99845 * 5.32253 * 7 6 5 9 9 C 1.50701 * 120.00272 * 185.32978 * 7 6 5 10 10 C 1.52994 * 109.47267 * 176.39616 * 9 7 6 11 11 C 1.52998 * 109.47140 * 56.39397 * 9 7 6 12 12 C 1.50706 * 109.46814 * 296.39227 * 9 7 6 13 13 C 1.34670 * 126.59176 * 349.87523 * 12 9 7 14 14 N 1.34122 * 108.01816 * 180.02562 * 13 12 9 15 15 C 1.30499 * 109.26076 * 359.97438 * 14 13 12 16 16 N 1.35042 * 108.69754 * 0.02562 * 15 14 13 17 17 H 0.96996 * 126.39893 * 179.73668 * 16 15 14 18 18 C 1.46928 * 118.74204 * 53.30912 * 6 5 3 19 19 C 1.53195 * 108.77177 * 306.64647 * 18 6 5 20 20 C 1.53040 * 109.49354 * 174.99830 * 3 2 1 21 21 H 1.09002 * 109.46250 * 61.29984 * 20 3 2 22 22 N 1.46498 * 109.45022 * 301.32925 * 20 3 2 23 23 C 1.36934 * 119.99834 * 154.94384 * 22 20 3 24 24 H 1.08005 * 120.00246 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99889 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00075 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99900 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47611 * 359.97438 * 27 25 23 29 29 H 1.48513 * 109.47180 * 119.99868 * 27 25 23 30 30 H 1.48496 * 109.47530 * 239.99752 * 27 25 23 31 31 H 1.09003 * 109.47164 * 60.00072 * 1 2 3 32 32 H 1.08999 * 109.46611 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47488 * 300.00051 * 1 2 3 34 34 H 1.09002 * 109.47386 * 240.00103 * 2 1 3 35 35 H 1.08996 * 109.46830 * 119.99753 * 2 1 3 36 36 H 1.08998 * 109.50823 * 65.67538 * 5 3 2 37 37 H 1.08997 * 109.43394 * 305.39255 * 5 3 2 38 38 H 1.08998 * 109.47595 * 184.84636 * 10 9 7 39 39 H 1.09002 * 109.47110 * 304.84985 * 10 9 7 40 40 H 1.09007 * 109.47189 * 64.84344 * 10 9 7 41 41 H 1.09001 * 109.47215 * 305.88205 * 11 9 7 42 42 H 1.08998 * 109.47327 * 65.88556 * 11 9 7 43 43 H 1.09003 * 109.47069 * 185.88768 * 11 9 7 44 44 H 1.07999 * 125.98936 * 359.97438 * 13 12 9 45 45 H 1.08000 * 125.64997 * 179.97438 * 15 14 13 46 46 H 1.09007 * 109.58581 * 66.42953 * 18 6 5 47 47 H 1.08991 * 109.59219 * 186.71689 * 18 6 5 48 48 H 1.09008 * 109.49533 * 174.58195 * 19 18 6 49 49 H 1.08995 * 109.49567 * 294.64378 * 19 18 6 50 50 H 0.96996 * 120.00195 * 334.93959 * 22 20 3 51 51 H 0.97002 * 119.99835 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6046 1.9823 0.8410 5 6 1.6377 2.1273 -1.3050 6 7 2.2450 3.4644 -1.3508 7 6 1.4855 4.5566 -1.5673 8 8 0.2787 4.4532 -1.6303 9 6 2.1357 5.9061 -1.7312 10 6 1.0663 6.9519 -2.0528 11 6 3.1515 5.8474 -2.8739 12 6 2.8389 6.2835 -0.4528 13 6 2.7433 5.6517 0.7326 14 7 3.5219 6.2995 1.6119 15 6 4.0968 7.3083 1.0163 16 7 3.6974 7.3345 -0.2734 17 1 3.9657 7.9798 -0.9460 18 6 3.6951 3.5889 -1.1499 19 6 4.0735 2.8883 0.1589 20 6 3.5652 1.4451 0.1258 21 1 4.0009 0.9262 -0.7280 22 7 3.9538 0.7623 1.3622 23 6 5.1914 0.1854 1.4659 24 1 5.8809 0.2335 0.6359 25 6 5.5595 -0.4621 2.6372 26 7 4.7191 -0.5211 3.6485 27 14 7.2475 -1.2496 2.7783 28 1 7.9964 -1.0455 1.5124 29 1 7.9927 -0.6253 3.9010 30 1 7.0952 -2.7045 3.0337 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5523 2.2173 -1.3493 37 1 1.9921 1.5359 -2.1491 38 1 1.5444 7.9101 -2.2560 39 1 0.5002 6.6352 -2.9288 40 1 0.3920 7.0554 -1.2025 41 1 3.8528 5.0324 -2.6951 42 1 2.6296 5.6777 -3.8156 43 1 3.6958 6.7904 -2.9250 44 1 2.1440 4.7773 0.9392 45 1 4.7783 8.0070 1.4786 46 1 4.2209 3.1191 -1.9811 47 1 3.9672 4.6429 -1.0944 48 1 5.1577 2.8896 0.2720 49 1 3.6196 3.4153 0.9980 50 1 3.3345 0.7188 2.1075 51 1 4.9765 -0.9733 4.4672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037957501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:09:37 Heat of formation + Delta-G solvation = 37.183675 kcal Electronic energy + Delta-G solvation = -31413.681619 eV Core-core repulsion = 27542.392047 eV Total energy + Delta-G solvation = -3871.289572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.50480 -40.30029 -37.98448 -35.63111 -34.58784 -33.68837 -32.38165 -31.66456 -29.53182 -29.00466 -28.77485 -27.41555 -25.48765 -23.87048 -23.47288 -22.59549 -21.43200 -21.15031 -20.67460 -19.54771 -19.27853 -18.07645 -17.03565 -16.54466 -15.90214 -15.24407 -15.18806 -14.97485 -14.59603 -14.22284 -13.95392 -13.92768 -13.69652 -13.44503 -13.28293 -13.23673 -13.17023 -12.78903 -12.63412 -12.59666 -12.21545 -12.00299 -11.92569 -11.69905 -11.63774 -11.29098 -11.17934 -10.88768 -10.78270 -10.61541 -10.31368 -10.15770 -10.09177 -10.03490 -9.98362 -9.71781 -9.61281 -9.52593 -8.84649 -8.44578 -8.37905 -6.89960 -5.72439 -3.00551 1.89014 2.46587 2.98753 3.12993 3.16535 3.45010 3.50265 3.52812 4.23376 4.35219 4.61519 4.63734 4.70645 4.79470 5.10580 5.17382 5.22336 5.28258 5.29472 5.38283 5.43966 5.46841 5.51458 5.54029 5.57937 5.62920 5.65784 5.72259 5.72663 5.83576 5.91664 5.98889 6.04515 6.08268 6.16740 6.20626 6.40362 6.43125 6.44644 6.51909 6.61538 6.65390 6.76290 6.89785 7.00850 7.15154 7.23948 7.51071 7.73293 8.02774 8.19168 8.45697 9.57265 10.15447 10.50282 11.50109 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.004178 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.861904 B = 6700.757157 C = 8099.433963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.597 5.597 7 C 0.531 3.469 8 O -0.540 6.540 9 C -0.003 4.003 10 C -0.124 4.124 11 C -0.157 4.157 12 C -0.024 4.024 13 C 0.003 3.997 14 N -0.481 5.481 15 C 0.186 3.814 16 N -0.564 5.564 17 H 0.416 0.584 18 C 0.096 3.904 19 C -0.152 4.152 20 C 0.185 3.815 21 H 0.045 0.955 22 N -0.719 5.719 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.930 5.930 27 Si 0.902 3.098 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.167 0.833 45 H 0.208 0.792 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.384 0.616 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 16.267 -14.377 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.329 5.329 7 C 0.318 3.682 8 O -0.417 6.417 9 C -0.007 4.007 10 C -0.182 4.182 11 C -0.215 4.215 12 C -0.139 4.139 13 C -0.146 4.146 14 N -0.199 5.199 15 C -0.098 4.098 16 N -0.168 5.168 17 H 0.254 0.746 18 C -0.027 4.027 19 C -0.193 4.193 20 C 0.075 3.925 21 H 0.063 0.937 22 N -0.359 5.359 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.184 0.816 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.526 15.850 -13.554 21.341 hybrid contribution 1.083 0.143 -0.617 1.255 sum -3.443 15.993 -14.172 21.644 Atomic orbital electron populations 1.21842 0.96834 1.00983 1.01310 1.21450 0.94335 0.95719 1.03444 1.21698 0.97747 0.96242 0.96742 0.91174 1.21698 0.99407 0.81376 0.97966 1.48093 1.08616 1.06585 1.69597 1.19964 0.86821 0.85100 0.76355 1.90681 1.13826 1.85925 1.51236 1.19172 0.95792 0.94283 0.91476 1.21680 0.97299 0.96072 1.03165 1.22240 0.98691 1.03349 0.97187 1.20568 1.01313 0.94401 0.97629 1.22213 1.02150 1.01570 0.88637 1.70381 1.10632 1.06406 1.32493 1.25042 1.03219 1.00454 0.81081 1.43121 1.36594 1.24641 1.12482 0.74621 1.22261 0.79327 1.02004 0.99080 1.22737 1.02084 0.99007 0.95456 1.20174 0.90677 0.90601 0.91097 0.93709 1.42394 1.16454 1.64353 1.12695 1.19231 0.91853 1.27055 0.98528 0.91339 1.24701 0.97992 1.01635 0.96457 1.69668 1.35074 1.48430 1.04695 0.86188 0.84228 0.78882 0.77294 1.20698 1.21972 1.21994 0.93264 0.93230 0.92945 0.92535 0.89758 0.89093 0.91682 0.92510 0.91117 0.91433 0.90126 0.91134 0.92036 0.81565 0.77532 0.91970 0.89292 0.91040 0.91106 0.78170 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.81 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.71 1.91 -90.72 -0.17 -1.89 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.12 1.69 5.31 -3.94 -0.02 1.67 16 6 N -0.60 -8.17 2.67 -173.03 -0.46 -8.63 16 7 C 0.53 7.37 5.49 -10.98 -0.06 7.31 16 8 O -0.54 -9.03 15.38 5.56 0.09 -8.94 16 9 C 0.00 -0.03 0.73 -156.81 -0.11 -0.14 16 10 C -0.12 -1.20 7.77 37.15 0.29 -0.91 16 11 C -0.16 -1.27 8.11 37.16 0.30 -0.97 16 12 C -0.02 -0.27 3.82 -81.60 -0.31 -0.58 16 13 C 0.00 0.04 7.89 -17.81 -0.14 -0.10 16 14 N -0.48 -7.20 11.25 -14.67 -0.17 -7.36 16 15 C 0.19 1.90 13.04 -90.38 -1.18 0.72 16 16 N -0.56 -4.71 6.03 -10.30 -0.06 -4.77 16 17 H 0.42 1.96 8.69 -40.82 -0.35 1.60 16 18 C 0.10 1.28 3.64 -3.71 -0.01 1.27 16 19 C -0.15 -2.62 5.44 -26.61 -0.14 -2.77 16 20 C 0.18 3.50 2.20 -67.89 -0.15 3.35 16 21 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 22 N -0.72 -17.34 4.33 -53.38 -0.23 -17.57 16 23 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 27 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.65 7.22 -51.93 -0.37 1.27 16 36 H 0.09 1.35 5.71 -51.93 -0.30 1.06 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.71 4.74 -51.93 -0.25 0.46 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.36 7.78 -51.93 -0.40 -0.05 16 44 H 0.17 2.79 6.55 -52.49 -0.34 2.44 16 45 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.06 0.77 7.97 -51.93 -0.41 0.35 16 47 H 0.09 1.09 3.25 -51.93 -0.17 0.92 16 48 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 49 H 0.07 1.35 5.81 -51.93 -0.30 1.04 16 50 H 0.38 10.09 7.51 -40.82 -0.31 9.78 16 51 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -33.12 384.84 -9.25 -42.37 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -8.17 Total: 12.76 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.74 Total: -3.70 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.20 Total: -65.55 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.12 -9.25 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037957501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.550 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds