Wall clock time and date at job start Sat Apr 11 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46998 * 179.97438 * 4 3 2 6 6 N 1.39934 * 125.75320 * 269.69198 * 5 4 3 7 7 C 1.30452 * 108.89483 * 179.85248 * 6 5 4 8 8 C 1.41294 * 108.02324 * 0.40229 * 7 6 5 9 9 C 1.47429 * 126.41401 * 179.70307 * 8 7 6 10 10 O 1.21608 * 119.99545 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00147 * 0.05393 * 9 8 7 12 12 C 1.46497 * 119.99953 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46842 * 179.97438 * 12 11 9 14 14 H 1.08994 * 112.74308 * 56.23766 * 13 12 11 15 15 C 1.53497 * 113.46193 * 187.05739 * 13 12 11 16 16 C 1.53503 * 83.34316 * 140.84594 * 15 13 12 17 17 N 1.47066 * 87.98354 * 333.93119 * 16 15 13 18 18 C 1.36933 * 136.05258 * 207.16016 * 17 16 15 19 19 H 1.08002 * 119.99476 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00338 * 359.94551 * 18 17 16 21 21 N 1.31614 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99839 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47096 * 60.00378 * 22 20 18 24 24 H 1.48498 * 109.46938 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47395 * 300.00022 * 22 20 18 26 26 C 1.34260 * 125.75069 * 90.00670 * 5 4 3 27 27 C 1.50695 * 126.29668 * 359.94999 * 26 5 4 28 28 C 1.52996 * 109.47221 * 90.00308 * 27 26 5 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 36 36 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 37 37 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 38 38 H 1.07994 * 125.98789 * 180.18995 * 7 6 5 39 39 H 0.97004 * 120.00165 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.46786 * 299.99147 * 12 11 9 41 41 H 1.08996 * 109.47783 * 59.99168 * 12 11 9 42 42 H 1.09004 * 114.20314 * 254.42919 * 15 13 12 43 43 H 1.09000 * 114.21037 * 27.25843 * 15 13 12 44 44 H 1.09000 * 113.46255 * 219.14876 * 16 15 13 45 45 H 1.09004 * 113.46649 * 88.70936 * 16 15 13 46 46 H 0.96999 * 120.00302 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.47481 * 210.00687 * 27 26 5 48 48 H 1.09009 * 109.47063 * 330.00878 * 27 26 5 49 49 H 1.09000 * 109.47186 * 60.00258 * 28 27 26 50 50 H 1.08996 * 109.47433 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.47202 * 300.00549 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.3372 3.5918 -1.1359 7 6 4.7483 4.7708 -0.7582 8 6 4.7569 4.7989 0.6545 9 6 5.1589 5.9342 1.5048 10 8 5.1213 5.8299 2.7158 11 7 5.5675 7.0877 0.9401 12 6 5.9674 8.2156 1.7851 13 6 6.3848 9.3924 0.9008 14 1 5.6043 9.6915 0.2013 15 6 6.9845 10.5658 1.6880 16 6 7.9437 10.6450 0.4922 17 7 7.7003 9.2120 0.2684 18 6 8.3937 8.1688 -0.2847 19 1 7.9528 7.1834 -0.3156 20 6 9.6630 8.3779 -0.8061 21 7 10.2003 9.5788 -0.7685 22 14 10.6086 6.9548 -1.5612 23 1 9.8388 6.3994 -2.7031 24 1 11.9281 7.4371 -2.0424 25 1 10.8106 5.8968 -0.5390 26 6 4.3195 3.5638 1.0893 27 6 4.1633 3.1271 2.5231 28 6 5.4700 2.4975 3.0098 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9330 0.9287 0.8909 37 1 3.9338 0.9285 -0.8891 38 1 5.0353 5.5820 -1.4108 39 1 5.5974 7.1708 -0.0260 40 1 5.1288 8.5132 2.4145 41 1 6.8065 7.9187 2.4142 42 1 6.3201 11.4244 1.7856 43 1 7.4612 10.2782 2.6251 44 1 8.9717 10.8718 0.7748 45 1 7.5785 11.2788 -0.3160 46 1 11.0872 9.7250 -1.1332 47 1 3.9237 3.9916 3.1423 48 1 3.3587 2.3950 2.5943 49 1 6.2745 3.2295 2.9386 50 1 5.3569 2.1812 4.0467 51 1 5.7096 1.6330 2.3906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038899072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:43 Heat of formation + Delta-G solvation = 72.058805 kcal Electronic energy + Delta-G solvation = -29219.845193 eV Core-core repulsion = 25350.067920 eV Total energy + Delta-G solvation = -3869.777273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50673 -38.97522 -37.88731 -36.36627 -34.43206 -33.61958 -32.72069 -32.16980 -29.50217 -29.05740 -27.97341 -27.30122 -24.65373 -23.70810 -23.43400 -22.50880 -21.74192 -21.56626 -20.08620 -19.57480 -19.05460 -17.48274 -16.59415 -16.22286 -15.72186 -15.55039 -15.32253 -15.12913 -14.58762 -14.42380 -14.34003 -14.04229 -13.84586 -13.64894 -13.48864 -13.24680 -13.05297 -12.93544 -12.72750 -12.38347 -11.90937 -11.86442 -11.75240 -11.69723 -11.57730 -11.48027 -11.24399 -11.11126 -11.06612 -10.93093 -10.73540 -10.65051 -10.54586 -9.94600 -9.80573 -9.52171 -9.41044 -9.13611 -8.77860 -8.67005 -8.30231 -6.86797 -5.73847 -3.06141 1.57583 2.24831 2.30616 3.41317 3.46204 3.46468 3.73370 3.83780 4.23748 4.29199 4.42986 4.46890 4.55546 4.61918 4.81886 4.91614 4.95005 5.06272 5.19824 5.22103 5.25002 5.29497 5.32940 5.39037 5.44221 5.44517 5.55859 5.59457 5.66295 5.67054 5.74133 5.77742 5.83910 5.88282 5.96973 6.11791 6.18387 6.19869 6.37348 6.44746 6.49360 6.63693 6.78491 6.83412 7.02793 7.26228 7.43117 7.58079 7.60884 8.00738 8.08475 8.74929 9.06275 9.73540 10.66293 11.43374 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.002834 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.613941 B = 9875.942076 C =10753.115386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.129 3.871 5 N -0.362 5.362 6 N -0.300 5.300 7 C 0.086 3.914 8 C -0.288 4.288 9 C 0.591 3.409 10 O -0.559 6.559 11 N -0.710 5.710 12 C 0.125 3.875 13 C 0.127 3.873 14 H 0.048 0.952 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.212 4.212 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.156 3.844 27 C -0.067 4.067 28 C -0.141 4.141 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.190 0.810 39 H 0.401 0.599 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.253 0.747 47 H 0.112 0.888 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 -15.259 4.082 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.007 3.993 5 N -0.141 5.141 6 N -0.118 5.118 7 C -0.102 4.102 8 C -0.303 4.303 9 C 0.379 3.621 10 O -0.440 6.440 11 N -0.359 5.359 12 C 0.000 4.000 13 C 0.019 3.981 14 H 0.065 0.935 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.339 4.339 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.024 3.976 27 C -0.105 4.105 28 C -0.199 4.199 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.207 0.793 39 H 0.235 0.765 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.130 0.870 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.472 -16.370 3.730 24.232 hybrid contribution 0.822 -0.122 -0.625 1.040 sum -16.650 -16.493 3.104 23.640 Atomic orbital electron populations 1.21754 0.95275 1.01841 1.02115 1.21450 0.96483 0.95503 1.02469 1.22048 0.93709 0.98143 1.03687 1.21819 0.94939 0.77828 1.04675 1.48463 1.50098 1.12102 1.03424 1.77171 1.22856 1.04487 1.07329 1.24099 0.96504 0.95510 0.94100 1.20105 1.20163 0.96484 0.93537 1.17165 0.76607 0.81528 0.86838 1.90680 1.56250 1.82970 1.14097 1.45718 1.66303 1.13130 1.10731 1.21761 0.98970 0.85669 0.93550 1.22418 0.90438 0.92311 0.92899 0.93481 1.23661 0.99935 0.96998 0.99428 1.22030 0.98417 0.85793 0.91208 1.45665 1.12054 1.05194 1.69791 1.18813 0.96404 0.87328 1.31369 0.90175 1.24752 0.97425 0.96625 1.01560 1.69813 1.16402 1.19808 1.50613 0.86280 0.79350 0.81503 0.79152 1.21164 1.21622 1.21156 1.21482 0.94810 0.90552 0.90750 1.20424 0.98910 1.02726 0.88489 1.21646 0.97074 1.00386 1.00777 0.92577 0.92471 0.92587 0.91582 0.91517 0.90716 0.91189 0.88800 0.88432 0.79311 0.76483 0.92357 0.91161 0.92390 0.90212 0.91019 0.95783 0.93688 0.87011 0.91160 0.91322 0.91606 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.64 5.93 -26.73 -0.16 -0.80 16 3 C -0.14 -0.99 5.54 -26.73 -0.15 -1.14 16 4 C 0.13 1.08 6.03 -4.04 -0.02 1.05 16 5 N -0.36 -4.53 3.58 -56.60 -0.20 -4.73 16 6 N -0.30 -4.41 12.50 30.86 0.39 -4.03 16 7 C 0.09 1.27 11.50 -16.98 -0.20 1.07 16 8 C -0.29 -4.54 6.13 -105.06 -0.64 -5.19 16 9 C 0.59 10.52 7.81 -12.52 -0.10 10.42 16 10 O -0.56 -10.98 14.84 5.27 0.08 -10.90 16 11 N -0.71 -12.47 5.32 -61.38 -0.33 -12.80 16 12 C 0.13 2.29 5.52 -4.04 -0.02 2.27 16 13 C 0.13 2.45 4.10 -72.39 -0.30 2.16 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 15 C -0.16 -2.94 8.03 -26.21 -0.21 -3.15 16 16 C 0.15 3.47 7.39 -8.50 -0.06 3.41 16 17 N -0.60 -14.67 3.65 -176.98 -0.65 -15.31 16 18 C -0.21 -5.70 10.55 -15.06 -0.16 -5.86 16 19 H 0.08 2.08 7.50 -52.49 -0.39 1.68 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -27.13 11.51 55.49 0.64 -26.49 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 26 C 0.16 2.13 6.26 -81.60 -0.51 1.62 16 27 C -0.07 -0.75 5.39 -27.89 -0.15 -0.90 16 28 C -0.14 -1.54 9.89 37.16 0.37 -1.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.62 7.62 -51.93 -0.40 0.22 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.19 2.44 7.50 -52.49 -0.39 2.04 16 39 H 0.40 6.74 7.33 -40.82 -0.30 6.45 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 44 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.11 1.47 6.50 -51.93 -0.34 1.13 16 48 H 0.07 0.59 7.70 -51.92 -0.40 0.19 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 415.76 15.07 6.27 6.27 Total: -1.00 -33.15 415.76 -9.78 -42.94 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.91 Total: 4.73 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.04 Total: 3.05 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.15 Total: -63.36 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.15 -9.78 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038899072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.995 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds