Wall clock time and date at job start Sat Apr 11 2020 04:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47056 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47052 * 179.97438 * 4 3 2 6 6 N 1.39939 * 125.75743 * 270.12497 * 5 4 3 7 7 C 1.30442 * 108.89500 * 180.26236 * 6 5 4 8 8 C 1.41288 * 108.02952 * 359.77809 * 7 6 5 9 9 C 1.47425 * 126.41957 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00515 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99904 * 359.97438 * 9 8 7 12 12 C 1.46504 * 120.00264 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47123 * 179.97438 * 12 11 9 14 14 H 1.08998 * 112.97039 * 306.67612 * 13 12 11 15 15 C 1.53947 * 113.76925 * 174.99925 * 13 12 11 16 16 C 1.53938 * 86.29133 * 222.09363 * 15 13 12 17 17 N 1.47581 * 86.12117 * 23.60662 * 16 15 13 18 18 C 1.36932 * 134.49544 * 155.36135 * 17 16 15 19 19 H 1.08006 * 119.99926 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00099 * 0.02562 * 18 17 16 21 21 N 1.31614 * 119.99662 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47490 * 59.99984 * 22 20 18 24 24 H 1.48497 * 109.47341 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47706 * 299.99856 * 22 20 18 26 26 C 1.34266 * 125.75319 * 90.00150 * 5 4 3 27 27 C 1.50697 * 126.28951 * 0.02562 * 26 5 4 28 28 C 1.52997 * 109.47466 * 89.71362 * 27 26 5 29 29 H 1.08996 * 109.47030 * 300.00507 * 1 2 3 30 30 H 1.09000 * 109.46857 * 60.00311 * 1 2 3 31 31 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47030 * 239.99493 * 2 1 3 33 33 H 1.09000 * 109.46857 * 119.99689 * 2 1 3 34 34 H 1.08996 * 109.47615 * 59.99851 * 3 2 1 35 35 H 1.09000 * 109.47034 * 299.99581 * 3 2 1 36 36 H 1.09005 * 109.47127 * 59.99384 * 4 3 2 37 37 H 1.09000 * 109.46857 * 299.99689 * 4 3 2 38 38 H 1.08005 * 125.98573 * 179.80087 * 7 6 5 39 39 H 0.96999 * 120.00062 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.46576 * 299.99535 * 12 11 9 41 41 H 1.09000 * 109.46935 * 59.99453 * 12 11 9 42 42 H 1.09001 * 113.73726 * 336.43792 * 15 13 12 43 43 H 1.08996 * 113.74097 * 107.63801 * 15 13 12 44 44 H 1.08997 * 113.77462 * 137.91195 * 16 15 13 45 45 H 1.09006 * 113.76922 * 269.19368 * 16 15 13 46 46 H 0.97003 * 119.99976 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.47120 * 329.71115 * 27 26 5 48 48 H 1.08998 * 109.46862 * 209.71917 * 27 26 5 49 49 H 1.09002 * 109.47153 * 59.99773 * 28 27 26 50 50 H 1.09001 * 109.46832 * 299.99964 * 28 27 26 51 51 H 1.09004 * 109.47261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.3291 3.5948 -1.1359 7 6 4.7511 4.7698 -0.7581 8 6 4.7618 4.7972 0.6545 9 6 5.1686 5.9307 1.5049 10 8 5.1314 5.8264 2.7159 11 7 5.5818 7.0825 0.9401 12 6 5.9855 8.2091 1.7851 13 6 6.4078 9.3842 0.9009 14 1 7.1660 9.1129 0.1664 15 6 6.7367 10.6659 1.6876 16 6 5.9689 11.4193 0.5865 17 7 5.2737 10.1417 0.3367 18 6 4.0628 9.7973 -0.2021 19 1 3.7805 8.7574 -0.2753 20 6 3.1987 10.7847 -0.6552 21 7 3.5431 12.0519 -0.5664 22 14 1.5473 10.3148 -1.3908 23 1 0.7484 9.5745 -0.3815 24 1 0.8177 11.5435 -1.7946 25 1 1.7626 9.4529 -2.5808 26 6 4.3194 3.5640 1.0893 27 6 4.1645 3.1266 2.5231 28 6 5.4699 2.4918 3.0066 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9338 0.9284 -0.8891 37 1 3.9330 0.9288 0.8909 38 1 5.0412 5.5800 -1.4107 39 1 5.6118 7.1656 -0.0258 40 1 5.1477 8.5100 2.4142 41 1 6.8233 7.9092 2.4147 42 1 6.2600 10.7143 2.6667 43 1 7.8009 10.8993 1.7211 44 1 5.3177 12.2070 0.9653 45 1 6.5976 11.7485 -0.2409 46 1 2.9392 12.7419 -0.8827 47 1 3.3573 2.3976 2.5954 48 1 3.9294 3.9915 3.1433 49 1 6.2770 3.2208 2.9343 50 1 5.7048 1.6268 2.3863 51 1 5.3579 2.1758 4.0438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038899073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:47 Heat of formation + Delta-G solvation = 68.497893 kcal Electronic energy + Delta-G solvation = -29204.318285 eV Core-core repulsion = 25334.386599 eV Total energy + Delta-G solvation = -3869.931686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51817 -38.92448 -37.74107 -36.34848 -34.44900 -33.63905 -32.71987 -32.12726 -29.52083 -29.05312 -27.90738 -27.33690 -24.66989 -23.72838 -23.32102 -22.58435 -21.77338 -21.59159 -20.10056 -19.57244 -18.95929 -17.49037 -16.57883 -16.21563 -15.69901 -15.59258 -15.30629 -15.12972 -14.59186 -14.40726 -14.36936 -14.07928 -13.79950 -13.66298 -13.49318 -13.26599 -13.09230 -12.83803 -12.81057 -12.40975 -11.85914 -11.84419 -11.77265 -11.71671 -11.55094 -11.37188 -11.28070 -11.08359 -11.04835 -10.96254 -10.69804 -10.66279 -10.51580 -9.95328 -9.72510 -9.55593 -9.42674 -9.24913 -8.75475 -8.68645 -8.31939 -6.85266 -5.72417 -3.04503 1.56542 2.23793 2.29724 3.41911 3.46870 3.47140 3.71573 3.82982 4.23737 4.30135 4.42690 4.47760 4.57592 4.63799 4.80811 4.90744 4.95455 5.08177 5.15633 5.17473 5.24868 5.29353 5.34172 5.37658 5.44910 5.46862 5.55564 5.60914 5.67482 5.70360 5.75666 5.77414 5.85394 5.88819 5.97670 6.09069 6.12251 6.18618 6.36887 6.45151 6.48049 6.66966 6.78669 6.82618 7.01944 7.29248 7.45700 7.56897 7.63515 8.02855 8.06897 8.73713 9.08866 9.75539 10.63834 11.44416 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.003114 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.824346 B = 8989.945864 C =10695.894646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.129 3.871 5 N -0.362 5.362 6 N -0.300 5.300 7 C 0.085 3.915 8 C -0.288 4.288 9 C 0.591 3.409 10 O -0.559 6.559 11 N -0.710 5.710 12 C 0.127 3.873 13 C 0.126 3.874 14 H 0.049 0.951 15 C -0.156 4.156 16 C 0.158 3.842 17 N -0.602 5.602 18 C -0.217 4.217 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.906 3.094 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.156 3.844 27 C -0.068 4.068 28 C -0.139 4.139 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.190 0.810 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.026 0.974 46 H 0.253 0.747 47 H 0.071 0.929 48 H 0.113 0.887 49 H 0.066 0.934 50 H 0.046 0.954 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -22.590 3.630 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.178 4.178 4 C 0.008 3.992 5 N -0.141 5.141 6 N -0.118 5.118 7 C -0.102 4.102 8 C -0.303 4.303 9 C 0.379 3.621 10 O -0.439 6.439 11 N -0.359 5.359 12 C 0.002 3.998 13 C 0.018 3.982 14 H 0.067 0.933 15 C -0.195 4.195 16 C 0.033 3.967 17 N -0.329 5.329 18 C -0.345 4.345 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.736 3.264 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.024 3.976 27 C -0.107 4.107 28 C -0.197 4.197 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.207 0.793 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.131 0.869 49 H 0.085 0.915 50 H 0.065 0.935 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.623 -23.449 3.305 23.736 hybrid contribution -0.808 0.454 -0.627 1.119 sum 0.816 -22.995 2.678 23.165 Atomic orbital electron populations 1.21759 0.95246 1.01822 1.02234 1.21440 0.96539 0.95450 1.02362 1.22069 0.93685 0.98177 1.03875 1.21815 0.95031 0.77759 1.04556 1.48472 1.50186 1.12016 1.03419 1.77166 1.22661 1.04660 1.07347 1.24090 0.96588 0.95472 0.94091 1.20100 1.20200 0.96452 0.93536 1.17160 0.76565 0.81551 0.86844 1.90682 1.55987 1.83154 1.14093 1.45718 1.66635 1.12917 1.10676 1.21716 0.99526 0.85042 0.93488 1.22508 0.90848 0.91496 0.93327 0.93347 1.23769 0.98818 0.97182 0.99711 1.22192 0.91490 0.91134 0.91853 1.46070 1.12791 1.01891 1.72103 1.18911 0.90340 0.92438 1.32763 0.90349 1.24735 0.98538 0.95320 1.01768 1.69806 1.36489 0.98494 1.52047 0.86295 0.83991 0.76990 0.79089 1.21207 1.21616 1.21227 1.21476 0.94746 0.90591 0.90741 1.20435 0.98876 1.02865 0.88557 1.21632 0.97033 1.00168 1.00824 0.92539 0.92528 0.92478 0.91562 0.91627 0.91118 0.90632 0.88463 0.88806 0.79322 0.76565 0.91025 0.92253 0.90523 0.92855 0.90868 0.95628 0.93701 0.91078 0.86908 0.91531 0.93461 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.14 -1.09 5.54 -26.73 -0.15 -1.24 16 4 C 0.13 1.07 6.03 -4.04 -0.02 1.05 16 5 N -0.36 -4.48 3.58 -56.60 -0.20 -4.69 16 6 N -0.30 -4.36 12.50 30.86 0.39 -3.98 16 7 C 0.09 1.25 11.50 -16.98 -0.20 1.05 16 8 C -0.29 -4.50 6.13 -105.07 -0.64 -5.15 16 9 C 0.59 10.45 7.81 -12.52 -0.10 10.35 16 10 O -0.56 -10.93 14.84 5.27 0.08 -10.85 16 11 N -0.71 -12.37 5.52 -61.38 -0.34 -12.71 16 12 C 0.13 2.32 5.54 -4.04 -0.02 2.30 16 13 C 0.13 2.43 4.33 -66.86 -0.29 2.14 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C -0.16 -2.86 7.86 -25.81 -0.20 -3.06 16 16 C 0.16 3.66 7.51 -2.98 -0.02 3.63 16 17 N -0.60 -14.74 3.57 -170.74 -0.61 -15.35 16 18 C -0.22 -5.87 10.51 -15.06 -0.16 -6.03 16 19 H 0.08 2.05 7.80 -52.48 -0.41 1.64 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.24 11.38 55.49 0.63 -26.60 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.16 2.12 6.26 -81.60 -0.51 1.61 16 27 C -0.07 -0.77 5.39 -27.89 -0.15 -0.92 16 28 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.58 7.63 -51.93 -0.40 0.19 16 38 H 0.19 2.38 7.50 -52.48 -0.39 1.98 16 39 H 0.40 6.60 7.43 -40.82 -0.30 6.30 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 48 H 0.11 1.53 6.50 -51.93 -0.34 1.19 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 416.33 15.07 6.27 6.27 Total: -1.00 -33.34 416.33 -9.72 -43.06 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.93 Total: 4.44 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.98 Total: 3.03 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.13 Total: -63.33 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.34 -9.72 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038899073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.556 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds