Wall clock time and date at job start Sat Apr 11 2020 04:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47285 * 2 1 4 4 C 1.53008 * 109.47254 * 240.00256 * 2 1 3 5 5 N 1.46501 * 109.46512 * 294.99949 * 4 2 1 6 6 C 1.35035 * 124.88200 * 124.72792 * 5 4 2 7 7 C 1.35359 * 107.22814 * 179.89068 * 6 5 4 8 8 C 1.41503 * 105.50516 * 0.34367 * 7 6 5 9 9 C 1.47709 * 126.52030 * 179.77483 * 8 7 6 10 10 O 1.21571 * 120.00159 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00021 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99883 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.46553 * 60.02226 * 12 11 9 14 14 C 1.53044 * 109.45476 * 300.06182 * 12 11 9 15 15 C 1.53194 * 109.31459 * 301.34751 * 14 12 11 16 16 N 1.46922 * 108.77315 * 305.36615 * 15 14 12 17 17 C 1.36941 * 120.63249 * 233.62851 * 16 15 14 18 18 H 1.08007 * 119.99779 * 27.66668 * 17 16 15 19 19 C 1.38813 * 120.00647 * 207.67058 * 17 16 15 20 20 N 1.31622 * 119.99553 * 17.35808 * 19 17 16 21 21 Si 1.86796 * 120.00176 * 197.36185 * 19 17 16 22 22 H 1.48491 * 109.47343 * 59.99912 * 21 19 17 23 23 H 1.48497 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47029 * 299.99472 * 21 19 17 25 25 C 1.46920 * 118.74189 * 53.60953 * 16 15 14 26 26 C 1.53040 * 109.46079 * 179.97438 * 12 11 9 27 27 N 1.28471 * 124.88597 * 305.01674 * 5 4 2 28 28 H 1.08996 * 109.47230 * 60.00200 * 1 2 3 29 29 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46811 * 299.99666 * 1 2 3 31 31 H 1.09005 * 109.47409 * 120.00363 * 2 1 3 32 32 H 1.09006 * 109.47174 * 60.00387 * 3 2 1 33 33 H 1.09004 * 109.47519 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47245 * 300.00379 * 3 2 1 35 35 H 1.09000 * 109.46982 * 54.99740 * 4 2 1 36 36 H 1.09001 * 109.47215 * 174.99938 * 4 2 1 37 37 H 1.08003 * 126.38171 * 0.02562 * 6 5 4 38 38 H 1.08004 * 127.24789 * 180.09020 * 7 6 5 39 39 H 0.96999 * 120.00020 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.47271 * 60.00220 * 13 12 11 41 41 H 1.08998 * 109.47581 * 180.02562 * 13 12 11 42 42 H 1.09006 * 109.47191 * 300.00306 * 13 12 11 43 43 H 1.08997 * 109.49910 * 61.30654 * 14 12 11 44 44 H 1.09008 * 109.49491 * 181.39468 * 14 12 11 45 45 H 1.09002 * 109.58318 * 185.57948 * 15 14 12 46 46 H 1.08998 * 109.58386 * 65.15419 * 15 14 12 47 47 H 0.96992 * 119.99844 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.58954 * 186.60313 * 25 16 15 49 49 H 1.08999 * 109.70409 * 66.24661 * 25 16 15 50 50 H 1.09000 * 109.50128 * 178.60121 * 26 12 11 51 51 H 1.09002 * 109.49620 * 298.67264 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 -2.1328 -1.1906 6 6 0.9523 -2.7818 -2.1456 7 6 0.7969 -4.0605 -1.7296 8 6 1.4380 -4.1291 -0.4701 9 6 1.5417 -5.3182 0.3999 10 8 1.0450 -6.3717 0.0513 11 7 2.1869 -5.2355 1.5803 12 6 2.2901 -6.4151 2.4430 13 6 3.0266 -7.5294 1.6969 14 6 0.8867 -6.8953 2.8199 15 6 0.1400 -5.7657 3.5362 16 7 0.9490 -5.3124 4.6758 17 6 0.4141 -5.2630 5.9355 18 1 -0.3894 -5.9315 6.2075 19 6 0.9045 -4.3538 6.8627 20 7 1.6224 -3.3265 6.4608 21 14 0.5455 -4.5884 8.6808 22 1 1.0971 -5.8917 9.1302 23 1 1.1773 -3.4905 9.4558 24 1 -0.9228 -4.5695 8.9019 25 6 2.3429 -4.9133 4.4384 26 6 3.0655 -6.0527 3.7117 27 7 1.9251 -2.9299 -0.2207 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6054 -0.2617 -2.1370 36 1 3.1264 -0.6443 -1.2952 37 1 0.5867 -2.3598 -3.0701 38 1 0.2869 -4.8591 -2.2479 39 1 2.5835 -4.3951 1.8584 40 1 4.0260 -7.1875 1.4277 41 1 3.1031 -8.4073 2.3384 42 1 2.4751 -7.7874 0.7928 43 1 0.3435 -7.1756 1.9174 44 1 0.9630 -7.7581 3.4818 45 1 -0.8219 -6.1330 3.8940 46 1 -0.0168 -4.9364 2.8465 47 1 1.9654 -2.6914 7.1087 48 1 2.8345 -4.7181 5.3914 49 1 2.3680 -4.0138 3.8233 50 1 3.1213 -6.9233 4.3652 51 1 4.0727 -5.7336 3.4438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045450656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:52 Heat of formation + Delta-G solvation = 55.592223 kcal Electronic energy + Delta-G solvation = -30471.745357 eV Core-core repulsion = 26601.254039 eV Total energy + Delta-G solvation = -3870.491318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.62170 -39.78382 -37.23763 -36.60603 -34.29478 -32.48327 -31.68969 -30.89032 -30.32756 -29.80917 -27.43803 -27.33385 -26.92461 -24.06837 -23.37609 -22.18464 -21.43961 -21.00891 -20.45098 -19.63972 -18.45974 -17.86548 -16.75320 -16.41905 -16.30300 -15.16761 -14.82282 -14.71587 -14.51718 -14.09347 -13.91336 -13.68266 -13.65248 -13.34541 -13.23545 -13.12030 -12.98056 -12.91954 -12.57357 -12.29872 -12.22574 -11.70793 -11.54361 -11.46501 -11.28829 -11.22594 -11.12099 -11.10207 -10.85359 -10.68605 -10.65386 -10.32033 -10.21028 -9.79973 -9.77280 -9.54631 -9.19770 -9.10619 -8.97832 -8.48297 -8.37326 -6.58918 -5.73511 -3.14166 1.77697 2.22003 2.42756 3.41742 3.46871 3.48958 3.62684 3.79683 4.15045 4.46244 4.54815 4.65323 4.70094 4.80976 4.94737 5.13080 5.25115 5.34715 5.37854 5.40330 5.46388 5.54743 5.58497 5.62993 5.63560 5.71486 5.73463 5.82711 5.86739 6.04114 6.06659 6.10202 6.15527 6.29430 6.41207 6.43838 6.46657 6.51853 6.62965 6.75149 6.81295 6.82484 6.92779 7.07808 7.20044 7.38466 7.67291 7.83997 7.88772 8.16692 8.50949 8.68593 9.27576 9.91603 10.49217 11.34959 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010081 B = 0.003979 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.767168 B = 7035.249681 C = 9017.239092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.126 3.874 5 N -0.280 5.280 6 C -0.025 4.025 7 C -0.181 4.181 8 C -0.013 4.013 9 C 0.604 3.396 10 O -0.539 6.539 11 N -0.695 5.695 12 C 0.183 3.817 13 C -0.160 4.160 14 C -0.142 4.142 15 C 0.151 3.849 16 N -0.590 5.590 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.172 3.828 26 C -0.145 4.145 27 N -0.253 5.253 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.177 0.823 38 H 0.159 0.841 39 H 0.406 0.594 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.015 0.985 47 H 0.253 0.747 48 H 0.088 0.912 49 H 0.017 0.983 50 H 0.071 0.929 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 6.143 -18.292 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.202 4.202 4 C 0.005 3.995 5 N -0.068 5.068 6 C -0.168 4.168 7 C -0.209 4.209 8 C -0.174 4.174 9 C 0.388 3.612 10 O -0.416 6.416 11 N -0.345 5.345 12 C 0.098 3.902 13 C -0.219 4.219 14 C -0.182 4.182 15 C 0.024 3.976 16 N -0.313 5.313 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.046 3.954 26 C -0.185 4.185 27 N -0.089 5.089 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.194 0.806 38 H 0.177 0.823 39 H 0.242 0.758 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.033 0.967 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.035 0.965 50 H 0.090 0.910 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.288 6.257 -17.615 18.980 hybrid contribution -0.438 0.069 0.425 0.614 sum 2.850 6.326 -17.191 18.538 Atomic orbital electron populations 1.21829 0.94348 1.02303 1.02040 1.21464 0.96967 0.96637 0.98071 1.21774 1.01250 0.94696 1.02495 1.22155 1.01716 0.74904 1.00682 1.45530 1.38590 1.09962 1.12731 1.22795 1.02856 0.93615 0.97510 1.21735 1.05881 0.96968 0.96363 1.22124 1.05234 0.92542 0.97452 1.16842 0.78219 0.85544 0.80547 1.90692 1.48236 1.28704 1.73933 1.46018 1.55564 1.14594 1.18360 1.20298 0.96343 0.84279 0.89251 1.22229 0.99714 0.98218 1.01699 1.22397 0.95542 0.99785 1.00510 1.20829 0.93600 0.93630 0.89512 1.44021 1.07131 1.76831 1.03304 1.19172 1.17740 1.13329 0.87593 0.91815 1.24996 1.01028 0.95019 0.98628 1.70024 1.39811 1.12347 1.32721 0.86391 0.77913 0.77119 0.85497 1.21091 1.21729 1.20988 1.20738 0.84633 0.90850 0.99148 1.22526 0.97826 1.02708 0.95441 1.73538 1.21112 1.00991 1.13263 0.92813 0.92565 0.91844 0.88815 0.91579 0.92209 0.92541 0.88169 0.88993 0.80562 0.82328 0.75841 0.93372 0.92223 0.90852 0.90818 0.91831 0.93197 0.96703 0.93740 0.89347 0.96535 0.91015 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.08 37.16 0.34 -1.11 16 2 C -0.11 -1.02 2.95 -90.62 -0.27 -1.29 16 3 C -0.14 -1.00 9.19 37.16 0.34 -0.66 16 4 C 0.13 0.98 5.79 -4.04 -0.02 0.96 16 5 N -0.28 -3.19 2.86 -61.33 -0.18 -3.36 16 6 C -0.03 -0.26 11.40 -17.17 -0.20 -0.46 16 7 C -0.18 -2.41 10.81 -39.37 -0.43 -2.83 16 8 C -0.01 -0.21 7.13 -82.76 -0.59 -0.80 16 9 C 0.60 10.93 7.24 -12.39 -0.09 10.84 16 10 O -0.54 -10.64 13.14 5.30 0.07 -10.57 16 11 N -0.69 -12.45 4.09 -48.54 -0.20 -12.65 16 12 C 0.18 3.34 0.66 -131.78 -0.09 3.25 16 13 C -0.16 -2.60 8.40 37.15 0.31 -2.29 16 14 C -0.14 -2.82 4.67 -26.61 -0.12 -2.95 16 15 C 0.15 3.43 6.26 -3.71 -0.02 3.41 16 16 N -0.59 -15.05 3.00 -172.29 -0.52 -15.57 16 17 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 18 H 0.06 1.76 7.89 -52.48 -0.41 1.35 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 21 Si 0.90 21.90 29.59 -169.99 -5.03 16.88 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.17 4.07 5.04 -3.69 -0.02 4.05 16 26 C -0.15 -2.78 4.96 -26.58 -0.13 -2.92 16 27 N -0.25 -3.78 11.27 33.42 0.38 -3.40 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.49 8.04 -51.93 -0.42 0.07 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 39 H 0.41 7.32 7.00 -40.82 -0.29 7.03 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 43 H 0.07 1.48 6.20 -51.93 -0.32 1.16 16 44 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 45 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 46 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 49 H 0.02 0.41 6.94 -51.93 -0.36 0.05 16 50 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 51 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -32.34 398.15 -8.76 -41.11 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.69 Total: 7.05 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.22 Total: 0.09 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.11 Total: -60.56 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.34 -8.76 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045450656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.698 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds