Wall clock time and date at job start Sat Apr 11 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 C 1.53004 * 109.47009 * 120.00105 * 2 1 3 5 5 N 1.46498 * 109.47149 * 174.73121 * 4 2 1 6 6 N 1.28442 * 125.18893 * 275.22765 * 5 4 2 7 7 C 1.30861 * 110.93123 * 179.69133 * 6 5 4 8 8 C 1.39680 * 107.85579 * 0.45775 * 7 6 5 9 9 C 1.36594 * 125.19074 * 95.20440 * 5 4 2 10 10 C 1.47156 * 126.88678 * 359.97438 * 9 5 4 11 11 O 1.21635 * 120.00194 * 5.50081 * 10 9 5 12 12 N 1.34780 * 120.00187 * 185.49860 * 10 9 5 13 13 C 1.46503 * 119.99794 * 184.26987 * 12 10 9 14 14 C 1.53000 * 109.46000 * 60.03128 * 13 12 10 15 15 C 1.53043 * 109.46225 * 300.06884 * 13 12 10 16 16 C 1.53194 * 109.31019 * 301.34978 * 15 13 12 17 17 N 1.46923 * 108.77912 * 305.35966 * 16 15 13 18 18 C 1.36934 * 120.63183 * 233.63698 * 17 16 15 19 19 H 1.07997 * 120.00479 * 29.86152 * 18 17 16 20 20 C 1.38815 * 119.99745 * 209.85906 * 18 17 16 21 21 N 1.31622 * 120.00169 * 18.73115 * 20 18 17 22 22 Si 1.86799 * 120.00198 * 198.73313 * 20 18 17 23 23 H 1.48497 * 109.47084 * 89.99737 * 22 20 18 24 24 H 1.48497 * 109.47237 * 209.99969 * 22 20 18 25 25 H 1.48503 * 109.46899 * 330.00051 * 22 20 18 26 26 C 1.46925 * 118.73700 * 53.61020 * 17 16 15 27 27 C 1.53044 * 109.45717 * 180.02562 * 13 12 10 28 28 H 1.08998 * 109.47136 * 300.00412 * 1 2 3 29 29 H 1.09006 * 109.46723 * 59.99638 * 1 2 3 30 30 H 1.08992 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47136 * 239.99588 * 2 1 3 32 32 H 1.09001 * 109.46990 * 177.94780 * 3 2 1 33 33 H 1.09002 * 109.47201 * 297.94634 * 3 2 1 34 34 H 1.08999 * 109.47328 * 57.94562 * 3 2 1 35 35 H 1.08999 * 109.47242 * 54.72537 * 4 2 1 36 36 H 1.09003 * 109.46580 * 294.73263 * 4 2 1 37 37 H 1.07996 * 126.07710 * 180.30535 * 7 6 5 38 38 H 1.07996 * 127.31612 * 179.82767 * 8 7 6 39 39 H 0.96992 * 119.99694 * 4.27343 * 12 10 9 40 40 H 1.08993 * 109.47049 * 60.00147 * 14 13 12 41 41 H 1.09005 * 109.46862 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.46859 * 299.99312 * 14 13 12 43 43 H 1.08998 * 109.49603 * 61.29854 * 15 13 12 44 44 H 1.08991 * 109.49809 * 181.39353 * 15 13 12 45 45 H 1.09002 * 109.58185 * 185.57450 * 16 15 13 46 46 H 1.08996 * 109.71008 * 65.22437 * 16 15 13 47 47 H 0.96997 * 120.00211 * 179.97438 * 21 20 18 48 48 H 1.08993 * 109.59118 * 186.60986 * 26 17 16 49 49 H 1.09001 * 109.70344 * 66.24448 * 26 17 16 50 50 H 1.08994 * 109.49814 * 178.60589 * 27 13 12 51 51 H 1.08996 * 109.49511 * 298.67383 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4995 -0.8321 1.1876 6 7 4.1463 -1.7603 0.5794 7 6 5.4377 -1.5848 0.6976 8 6 5.6453 -0.4365 1.4652 9 6 4.3801 0.0361 1.7677 10 6 4.0499 1.2343 2.5555 11 8 2.8909 1.4814 2.8299 12 7 5.0315 2.0580 2.9730 13 6 4.7132 3.1987 3.8355 14 6 4.0771 2.6951 5.1326 15 6 3.7328 4.1259 3.1135 16 6 4.3593 4.6008 1.7986 17 7 5.6638 5.2109 2.0895 18 6 5.9554 6.4756 1.6529 19 1 5.1651 7.2025 1.5369 20 6 7.2668 6.8234 1.3595 21 7 8.1632 5.8849 1.1398 22 14 7.7597 8.6233 1.2765 23 1 8.2014 9.0780 2.6193 24 1 8.8726 8.7876 0.3072 25 1 6.5965 9.4351 0.8368 26 6 6.6492 4.4386 2.8583 27 6 5.9970 3.9657 4.1609 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1295 1.4426 0.0368 33 1 1.7072 1.9456 -0.9078 34 1 1.6471 1.9669 0.8710 35 1 1.6016 -1.7181 1.2978 36 1 1.7557 -0.1558 2.1367 37 1 6.2064 -2.2171 0.2785 38 1 6.5920 -0.0061 1.7565 39 1 5.9487 1.8956 2.7025 40 1 4.7749 2.0344 5.6468 41 1 3.8406 3.5437 5.7746 42 1 3.1629 2.1487 4.9007 43 1 2.8097 3.5859 2.9025 44 1 3.5147 4.9873 3.7446 45 1 3.7079 5.3376 1.3287 46 1 4.4942 3.7521 1.1281 47 1 9.0795 6.1279 0.9345 48 1 7.5087 5.0683 3.0877 49 1 6.9734 3.5750 2.2775 50 1 5.7577 4.8287 4.7821 51 1 6.6856 3.3119 4.6960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045453030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:55 Heat of formation + Delta-G solvation = 53.651821 kcal Electronic energy + Delta-G solvation = -31297.707910 eV Core-core repulsion = 27427.132450 eV Total energy + Delta-G solvation = -3870.575460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53237 -39.96548 -37.38309 -36.51065 -34.43677 -32.51407 -31.89734 -31.17809 -30.13605 -29.80566 -27.46361 -27.19651 -26.61064 -24.18300 -23.41284 -22.32384 -21.83818 -21.01723 -20.43900 -19.73042 -18.66748 -17.96660 -16.75691 -16.14317 -15.98763 -15.17088 -14.96923 -14.87777 -14.58220 -14.29202 -13.85940 -13.79342 -13.62825 -13.52399 -13.30227 -13.18506 -13.09563 -12.83719 -12.44575 -12.27284 -12.02138 -11.84193 -11.67047 -11.38853 -11.29875 -11.24332 -11.07998 -10.96952 -10.87480 -10.77813 -10.73547 -10.38125 -10.30918 -9.91100 -9.87315 -9.65898 -9.21709 -9.13069 -8.96660 -8.67105 -8.47616 -6.65972 -5.82147 -3.24052 1.37038 2.42054 2.66718 3.36219 3.39085 3.43878 3.44608 3.45078 4.46227 4.48485 4.62156 4.70634 4.86582 4.89072 5.18617 5.24056 5.28785 5.33146 5.37362 5.40026 5.47205 5.51537 5.58062 5.63333 5.67822 5.76801 5.81947 5.85338 5.94660 5.98750 6.01038 6.14516 6.16059 6.23623 6.30178 6.35126 6.40583 6.49642 6.52107 6.64833 6.66464 6.78258 6.81366 6.93167 7.03362 7.23687 7.50772 7.74993 7.80343 8.10908 8.38774 8.43809 9.19280 9.82637 10.41045 11.26535 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003551 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.298035 B = 7884.061765 C = 7968.778010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.253 5.253 6 N -0.284 5.284 7 C -0.006 4.006 8 C -0.193 4.193 9 C -0.030 4.030 10 C 0.593 3.407 11 O -0.540 6.540 12 N -0.692 5.692 13 C 0.187 3.813 14 C -0.160 4.160 15 C -0.143 4.143 16 C 0.152 3.848 17 N -0.589 5.589 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.174 3.826 27 C -0.146 4.146 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.403 0.597 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.014 0.986 47 H 0.253 0.747 48 H 0.083 0.917 49 H 0.017 0.983 50 H 0.073 0.927 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 -13.859 3.163 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.205 4.205 4 C -0.004 4.004 5 N -0.040 5.040 6 N -0.116 5.116 7 C -0.182 4.182 8 C -0.222 4.222 9 C -0.158 4.158 10 C 0.378 3.622 11 O -0.419 6.419 12 N -0.343 5.343 13 C 0.102 3.898 14 C -0.218 4.218 15 C -0.183 4.183 16 C 0.025 3.975 17 N -0.312 5.312 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.729 3.271 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.048 3.952 27 C -0.186 4.186 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.201 0.799 38 H 0.177 0.823 39 H 0.239 0.761 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.035 0.965 50 H 0.092 0.908 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.667 -14.326 2.865 18.089 hybrid contribution 1.663 1.285 0.024 2.101 sum -9.004 -13.042 2.889 16.109 Atomic orbital electron populations 1.21748 0.93696 1.01835 1.02725 1.21428 0.96538 0.97509 0.96989 1.21907 1.01235 0.94742 1.02621 1.22421 0.72977 1.02937 1.02068 1.45709 1.07444 1.16072 1.34768 1.73149 1.07609 1.13737 1.17129 1.23511 0.92368 0.99317 1.02958 1.22299 0.96706 0.98937 1.04210 1.21556 0.90409 0.97625 1.06241 1.16806 0.85537 0.81143 0.78698 1.90658 1.19034 1.74109 1.58112 1.45882 1.10370 1.27485 1.50514 1.20325 0.96373 0.84408 0.88714 1.22212 1.01603 1.01398 0.96572 1.22428 0.98532 0.98085 0.99255 1.20818 0.88173 0.95537 0.92945 1.43998 1.11729 1.14774 1.60682 1.19167 0.92880 0.87100 1.39229 0.91847 1.25042 0.97689 0.97310 0.99269 1.70042 1.03086 1.31098 1.50201 0.86339 0.78008 0.85314 0.77415 1.21442 1.21815 1.20443 1.20661 0.92548 0.94723 0.87292 1.22524 0.95230 0.99182 1.01657 0.91937 0.91925 0.92577 0.90803 0.93064 0.92760 0.90828 0.89032 0.85848 0.79938 0.82315 0.76104 0.93236 0.92004 0.91124 0.90522 0.91850 0.93227 0.96763 0.93682 0.89883 0.96520 0.90817 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 37.16 0.34 -0.90 16 2 C -0.11 -1.17 3.12 -90.62 -0.28 -1.46 16 3 C -0.15 -1.98 7.98 37.16 0.30 -1.68 16 4 C 0.12 1.35 5.43 -4.04 -0.02 1.33 16 5 N -0.25 -3.47 3.09 -57.14 -0.18 -3.65 16 6 N -0.28 -3.94 11.90 30.59 0.36 -3.58 16 7 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 8 C -0.19 -2.48 10.50 -38.98 -0.41 -2.89 16 9 C -0.03 -0.43 5.74 -82.06 -0.47 -0.90 16 10 C 0.59 8.99 6.40 -12.64 -0.08 8.91 16 11 O -0.54 -8.61 8.90 5.25 0.05 -8.57 16 12 N -0.69 -10.46 4.08 -48.71 -0.20 -10.66 16 13 C 0.19 2.97 0.66 -131.77 -0.09 2.88 16 14 C -0.16 -2.25 8.40 37.16 0.31 -1.93 16 15 C -0.14 -2.54 4.66 -26.61 -0.12 -2.66 16 16 C 0.15 3.19 6.25 -3.71 -0.02 3.16 16 17 N -0.59 -14.13 2.98 -172.35 -0.51 -14.65 16 18 C -0.25 -6.82 9.55 -15.06 -0.14 -6.97 16 19 H 0.06 1.70 7.90 -52.49 -0.41 1.29 16 20 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 21 N -0.90 -25.30 11.45 55.49 0.64 -24.66 16 22 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.17 3.80 5.03 -3.73 -0.02 3.78 16 27 C -0.15 -2.51 4.95 -26.63 -0.13 -2.65 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.81 6.23 -51.93 -0.32 0.48 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.05 6.97 -51.93 -0.36 0.69 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.53 5.94 -51.93 -0.31 1.22 16 37 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.16 1.74 7.62 -52.49 -0.40 1.34 16 39 H 0.40 5.90 6.34 -40.82 -0.26 5.64 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.05 6.31 -51.93 -0.33 0.72 16 43 H 0.08 1.35 6.06 -51.93 -0.31 1.03 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.01 0.32 7.74 -51.93 -0.40 -0.09 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.08 2.07 6.26 -51.93 -0.33 1.74 16 49 H 0.02 0.37 6.94 -51.93 -0.36 0.01 16 50 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -29.77 386.24 -8.61 -38.38 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.42 Total: 7.46 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.14 Total: -2.18 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.11 Total: -57.20 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.05 Total: -8.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.77 -8.61 -38.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045453030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.027 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds