Wall clock time and date at job start Sat Apr 11 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 C 1.53001 * 109.47086 * 120.00192 * 2 1 3 5 5 N 1.46502 * 109.47144 * 65.43004 * 4 2 1 6 6 N 1.28437 * 125.19145 * 83.17499 * 5 4 2 7 7 C 1.30865 * 110.92390 * 179.97438 * 6 5 4 8 8 C 1.39665 * 107.86359 * 0.02562 * 7 6 5 9 9 C 1.36593 * 125.18498 * 262.87368 * 5 4 2 10 10 C 1.47166 * 126.88745 * 359.97438 * 9 5 4 11 11 O 1.21620 * 119.99944 * 4.44656 * 10 9 5 12 12 N 1.34779 * 119.99871 * 184.44497 * 10 9 5 13 13 C 1.46501 * 119.99537 * 174.99037 * 12 10 9 14 14 C 1.53008 * 109.46742 * 185.01066 * 13 12 10 15 15 H 1.08995 * 110.01552 * 303.89182 * 14 13 12 16 16 C 1.53871 * 110.03258 * 65.28772 * 14 13 12 17 17 C 1.54264 * 106.59844 * 119.28046 * 16 14 13 18 18 C 1.54886 * 104.19679 * 23.61202 * 17 16 14 19 19 H 1.09001 * 110.75670 * 80.36650 * 18 17 16 20 20 N 1.46498 * 110.75772 * 203.55417 * 18 17 16 21 21 C 1.36934 * 120.00490 * 273.54770 * 20 18 17 22 22 H 1.08009 * 119.99523 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00338 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99848 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00026 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46962 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47043 * 119.99913 * 25 23 21 28 28 H 1.48494 * 109.47166 * 240.00455 * 25 23 21 29 29 C 1.54274 * 110.02811 * 182.45172 * 14 13 12 30 30 H 1.08997 * 109.47004 * 184.92591 * 1 2 3 31 31 H 1.09002 * 109.47297 * 304.92553 * 1 2 3 32 32 H 1.08996 * 109.47429 * 64.92434 * 1 2 3 33 33 H 1.08996 * 109.46992 * 240.00192 * 2 1 3 34 34 H 1.09002 * 109.46470 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47202 * 300.00230 * 3 2 1 36 36 H 1.08996 * 109.47121 * 60.00271 * 3 2 1 37 37 H 1.08997 * 109.47327 * 305.42500 * 4 2 1 38 38 H 1.09000 * 109.46813 * 185.42678 * 4 2 1 39 39 H 1.08002 * 126.06339 * 180.02562 * 7 6 5 40 40 H 1.08006 * 127.31821 * 179.97438 * 8 7 6 41 41 H 0.96992 * 120.00566 * 354.98781 * 12 10 9 42 42 H 1.09000 * 109.47214 * 305.00630 * 13 12 10 43 43 H 1.09000 * 109.47325 * 65.01335 * 13 12 10 44 44 H 1.08999 * 110.03182 * 238.57049 * 16 14 13 45 45 H 1.09007 * 110.03490 * 359.97438 * 16 14 13 46 46 H 1.09002 * 110.48328 * 142.28707 * 17 16 14 47 47 H 1.09000 * 110.49220 * 264.79521 * 17 16 14 48 48 H 0.97007 * 119.99823 * 93.54420 * 20 18 17 49 49 H 0.97001 * 119.99412 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.48658 * 335.78022 * 29 14 13 51 51 H 1.08993 * 110.48234 * 98.43203 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6613 -2.1351 1.1856 6 7 2.3081 -3.0469 0.5533 7 6 1.7230 -4.2103 0.6831 8 6 0.5872 -4.0325 1.4762 9 6 0.5696 -2.6857 1.7946 10 6 -0.4270 -1.9865 2.6215 11 8 -0.3680 -0.7790 2.7538 12 7 -1.4052 -2.6844 3.2319 13 6 -2.3308 -2.0053 4.1421 14 6 -3.2558 -3.0366 4.7917 15 1 -3.7757 -3.6081 4.0228 16 6 -2.4413 -3.9826 5.6913 17 6 -2.9955 -3.8166 7.1213 18 6 -4.4364 -3.2888 6.9114 19 1 -5.1153 -4.1058 6.6669 20 7 -4.9027 -2.5662 8.0974 21 6 -5.4903 -3.2494 9.1285 22 1 -5.6104 -4.3211 9.0670 23 6 -5.9316 -2.5648 10.2525 24 7 -5.7848 -1.2590 10.3274 25 14 -6.7339 -3.4969 11.6586 26 1 -6.7790 -4.9445 11.3308 27 1 -5.9444 -3.2953 12.9001 28 1 -8.1153 -2.9918 11.8628 29 6 -4.2766 -2.3288 5.7064 30 1 -0.3633 -1.0238 0.0882 31 1 -0.3634 0.5884 0.8426 32 1 -0.3634 0.4355 -0.9307 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.5995 -0.2667 2.1366 38 1 3.1257 -0.6379 1.2991 39 1 2.0589 -5.1423 0.2531 40 1 -0.1238 -4.7866 1.7800 41 1 -1.4964 -3.6361 3.0687 42 1 -1.7646 -1.4868 4.9158 43 1 -2.9267 -1.2841 3.5828 44 1 -2.5665 -5.0133 5.3596 45 1 -1.3869 -3.7073 5.6649 46 1 -3.0123 -4.7764 7.6377 47 1 -2.4001 -3.0943 7.6799 48 1 -4.7951 -1.6037 8.1524 49 1 -6.0936 -0.7807 11.1128 50 1 -3.8895 -1.3645 6.0357 51 1 -5.2283 -2.2028 5.1902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086709708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:07 Heat of formation + Delta-G solvation = 29.295377 kcal Electronic energy + Delta-G solvation = -28802.593398 eV Core-core repulsion = 24930.961764 eV Total energy + Delta-G solvation = -3871.631635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.85916 -39.72552 -38.13518 -36.85746 -35.02324 -33.47961 -32.30418 -31.49171 -30.53752 -28.97363 -27.49195 -27.33915 -26.85545 -24.79537 -23.16741 -22.92600 -21.91820 -20.79203 -20.34103 -19.66589 -19.37750 -18.17145 -17.11243 -16.52472 -16.42361 -16.00210 -15.58936 -15.43517 -15.01506 -14.74537 -14.49179 -14.10029 -13.94146 -13.89787 -13.57264 -13.37014 -13.14638 -12.92034 -12.82655 -12.50039 -12.29365 -12.16527 -11.88098 -11.59609 -11.35697 -11.20843 -11.13533 -11.07000 -10.89340 -10.81302 -10.63994 -10.59033 -10.31279 -10.20223 -10.13381 -9.83575 -9.67578 -9.52293 -9.32078 -9.16127 -8.88940 -6.95174 -5.77571 -3.06110 1.00190 2.09186 2.34258 2.95541 3.02545 3.42394 3.48017 3.50275 4.17629 4.30952 4.37704 4.57433 4.57719 4.62778 4.74447 4.87429 4.89042 5.01167 5.05148 5.10118 5.26096 5.32466 5.37078 5.43136 5.48751 5.50923 5.54068 5.57994 5.64246 5.67746 5.71697 5.85579 5.87439 5.93162 5.96586 6.01158 6.08402 6.15485 6.20577 6.30102 6.31160 6.43429 6.45751 6.54580 6.69019 6.85379 7.10163 7.20194 7.70352 7.77601 7.91707 8.41448 9.52374 10.11133 10.45035 11.45176 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002003 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.677269 B =13975.743784 C =14730.917851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.250 5.250 6 N -0.279 5.279 7 C -0.005 4.005 8 C -0.193 4.193 9 C -0.034 4.034 10 C 0.587 3.413 11 O -0.535 6.535 12 N -0.710 5.710 13 C 0.129 3.871 14 C -0.101 4.101 15 H 0.075 0.925 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.177 3.823 19 H 0.053 0.947 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.121 4.121 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.185 0.815 40 H 0.160 0.840 41 H 0.403 0.597 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.401 -2.282 -23.519 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.005 4.005 5 N -0.037 5.037 6 N -0.111 5.111 7 C -0.180 4.180 8 C -0.222 4.222 9 C -0.163 4.163 10 C 0.372 3.628 11 O -0.413 6.413 12 N -0.361 5.361 13 C 0.006 3.994 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.159 4.159 17 C -0.184 4.184 18 C 0.066 3.934 19 H 0.071 0.929 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.160 4.160 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.202 0.798 40 H 0.177 0.823 41 H 0.238 0.762 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.297 -0.836 -23.740 28.807 hybrid contribution -1.036 -1.210 1.117 1.946 sum 15.260 -2.047 -22.623 27.366 Atomic orbital electron populations 1.21889 0.93984 1.02100 1.02356 1.21418 0.97339 0.96709 0.96932 1.21763 1.00985 0.94602 1.02826 1.22444 1.01956 0.74042 1.02059 1.45772 1.16244 1.08635 1.33085 1.73201 1.22859 0.98322 1.16752 1.23557 0.95465 0.96253 1.02759 1.22261 1.01610 0.94150 1.04165 1.21450 0.95098 0.93948 1.05794 1.16906 0.80489 0.86344 0.79060 1.90776 1.74470 1.13289 1.62718 1.45745 1.31207 1.12889 1.46255 1.21643 0.90695 0.95088 0.91980 1.21972 0.96069 0.96260 0.97714 0.90692 1.22213 0.98753 0.98281 0.96639 1.23070 0.99898 1.01235 0.94226 1.21149 0.92380 0.93228 0.86594 0.92941 1.42389 1.70888 1.07040 1.15810 1.19287 1.30581 0.91790 0.95240 0.91144 1.24753 1.02065 0.95644 0.98629 1.69671 1.52642 1.06026 1.29764 0.86131 0.78824 0.78776 0.82554 1.20569 1.21906 1.21891 1.22564 0.97429 0.99600 0.96400 0.93358 0.90824 0.92867 0.90647 0.92354 0.91843 0.91827 0.86011 0.88690 0.79762 0.82265 0.76211 0.90659 0.91271 0.92351 0.92372 0.92593 0.91835 0.78206 0.93563 0.91160 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.94 37.16 0.30 -1.11 16 2 C -0.10 -0.87 3.12 -90.62 -0.28 -1.15 16 3 C -0.14 -0.94 9.19 37.16 0.34 -0.59 16 4 C 0.11 1.06 5.41 -4.04 -0.02 1.04 16 5 N -0.25 -2.67 3.05 -57.14 -0.17 -2.84 16 6 N -0.28 -3.02 11.90 30.59 0.36 -2.65 16 7 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 8 C -0.19 -1.64 10.50 -38.99 -0.41 -2.05 16 9 C -0.03 -0.36 5.76 -82.06 -0.47 -0.83 16 10 C 0.59 6.70 7.24 -12.63 -0.09 6.61 16 11 O -0.53 -7.29 12.37 5.26 0.07 -7.22 16 12 N -0.71 -6.89 5.21 -61.46 -0.32 -7.21 16 13 C 0.13 1.44 4.73 -4.04 -0.02 1.42 16 14 C -0.10 -1.16 2.98 -89.50 -0.27 -1.43 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.12 -1.48 6.15 -25.62 -0.16 -1.64 16 17 C -0.14 -2.41 6.51 -25.07 -0.16 -2.58 16 18 C 0.18 3.34 3.53 -65.94 -0.23 3.11 16 19 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 20 N -0.72 -17.72 5.26 -51.50 -0.27 -17.99 16 21 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 C -0.12 -1.82 5.97 -25.07 -0.15 -1.97 16 30 H 0.05 0.53 6.17 -51.93 -0.32 0.21 16 31 H 0.07 0.80 7.01 -51.93 -0.36 0.43 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.12 1.25 6.02 -51.93 -0.31 0.94 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.16 0.88 7.58 -52.48 -0.40 0.49 16 41 H 0.40 2.99 7.38 -40.82 -0.30 2.69 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.69 7.55 -51.92 -0.39 0.30 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.38 10.06 7.73 -40.82 -0.32 9.74 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.07 1.12 7.74 -51.93 -0.40 0.72 16 51 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -32.15 403.60 -9.33 -41.48 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.69 Total: 9.06 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.09 Total: -8.62 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.32 Total: -58.02 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.07 Total: -7.22 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.15 -9.33 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086709708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.774 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds