Wall clock time and date at job start Sat Apr 11 2020 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 C 1.53001 * 109.47086 * 120.00192 * 2 1 3 5 5 N 1.46502 * 109.47144 * 65.43004 * 4 2 1 6 6 N 1.28437 * 125.19145 * 83.17499 * 5 4 2 7 7 C 1.30865 * 110.92390 * 179.97438 * 6 5 4 8 8 C 1.39665 * 107.86359 * 0.02562 * 7 6 5 9 9 C 1.36593 * 125.18498 * 262.87368 * 5 4 2 10 10 C 1.47166 * 126.88745 * 359.97438 * 9 5 4 11 11 O 1.21620 * 119.99944 * 4.44656 * 10 9 5 12 12 N 1.34779 * 119.99871 * 184.44497 * 10 9 5 13 13 C 1.46501 * 119.99537 * 174.99037 * 12 10 9 14 14 C 1.53008 * 109.46742 * 185.01066 * 13 12 10 15 15 H 1.08995 * 110.01552 * 303.89182 * 14 13 12 16 16 C 1.53871 * 110.03258 * 65.28772 * 14 13 12 17 17 C 1.54264 * 106.59844 * 119.28046 * 16 14 13 18 18 C 1.54886 * 104.19679 * 23.61202 * 17 16 14 19 19 H 1.09001 * 110.75670 * 80.36650 * 18 17 16 20 20 N 1.46498 * 110.75772 * 203.55417 * 18 17 16 21 21 C 1.36934 * 120.00490 * 273.54770 * 20 18 17 22 22 H 1.08009 * 119.99523 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00338 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99848 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00026 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46962 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47043 * 119.99913 * 25 23 21 28 28 H 1.48494 * 109.47166 * 240.00455 * 25 23 21 29 29 C 1.54274 * 110.02811 * 182.45172 * 14 13 12 30 30 H 1.08997 * 109.47004 * 184.92591 * 1 2 3 31 31 H 1.09002 * 109.47297 * 304.92553 * 1 2 3 32 32 H 1.08996 * 109.47429 * 64.92434 * 1 2 3 33 33 H 1.08996 * 109.46992 * 240.00192 * 2 1 3 34 34 H 1.09002 * 109.46470 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47202 * 300.00230 * 3 2 1 36 36 H 1.08996 * 109.47121 * 60.00271 * 3 2 1 37 37 H 1.08997 * 109.47327 * 305.42500 * 4 2 1 38 38 H 1.09000 * 109.46813 * 185.42678 * 4 2 1 39 39 H 1.08002 * 126.06339 * 180.02562 * 7 6 5 40 40 H 1.08006 * 127.31821 * 179.97438 * 8 7 6 41 41 H 0.96992 * 120.00566 * 354.98781 * 12 10 9 42 42 H 1.09000 * 109.47214 * 305.00630 * 13 12 10 43 43 H 1.09000 * 109.47325 * 65.01335 * 13 12 10 44 44 H 1.08999 * 110.03182 * 238.57049 * 16 14 13 45 45 H 1.09007 * 110.03490 * 359.97438 * 16 14 13 46 46 H 1.09002 * 110.48328 * 142.28707 * 17 16 14 47 47 H 1.09000 * 110.49220 * 264.79521 * 17 16 14 48 48 H 0.97007 * 119.99823 * 93.54420 * 20 18 17 49 49 H 0.97001 * 119.99412 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.48658 * 335.78022 * 29 14 13 51 51 H 1.08993 * 110.48234 * 98.43203 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6613 -2.1351 1.1856 6 7 2.3081 -3.0469 0.5533 7 6 1.7230 -4.2103 0.6831 8 6 0.5872 -4.0325 1.4762 9 6 0.5696 -2.6857 1.7946 10 6 -0.4270 -1.9865 2.6215 11 8 -0.3680 -0.7790 2.7538 12 7 -1.4052 -2.6844 3.2319 13 6 -2.3308 -2.0053 4.1421 14 6 -3.2558 -3.0366 4.7917 15 1 -3.7757 -3.6081 4.0228 16 6 -2.4413 -3.9826 5.6913 17 6 -2.9955 -3.8166 7.1213 18 6 -4.4364 -3.2888 6.9114 19 1 -5.1153 -4.1058 6.6669 20 7 -4.9027 -2.5662 8.0974 21 6 -5.4903 -3.2494 9.1285 22 1 -5.6104 -4.3211 9.0670 23 6 -5.9316 -2.5648 10.2525 24 7 -5.7848 -1.2590 10.3274 25 14 -6.7339 -3.4969 11.6586 26 1 -6.7790 -4.9445 11.3308 27 1 -5.9444 -3.2953 12.9001 28 1 -8.1153 -2.9918 11.8628 29 6 -4.2766 -2.3288 5.7064 30 1 -0.3633 -1.0238 0.0882 31 1 -0.3634 0.5884 0.8426 32 1 -0.3634 0.4355 -0.9307 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.5995 -0.2667 2.1366 38 1 3.1257 -0.6379 1.2991 39 1 2.0589 -5.1423 0.2531 40 1 -0.1238 -4.7866 1.7800 41 1 -1.4964 -3.6361 3.0687 42 1 -1.7646 -1.4868 4.9158 43 1 -2.9267 -1.2841 3.5828 44 1 -2.5665 -5.0133 5.3596 45 1 -1.3869 -3.7073 5.6649 46 1 -3.0123 -4.7764 7.6377 47 1 -2.4001 -3.0943 7.6799 48 1 -4.7951 -1.6037 8.1524 49 1 -6.0936 -0.7807 11.1128 50 1 -3.8895 -1.3645 6.0357 51 1 -5.2283 -2.2028 5.1902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086709708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:10:05 Heat of formation + Delta-G solvation = 9.169030 kcal Electronic energy + Delta-G solvation = -28803.466142 eV Core-core repulsion = 24930.961764 eV Total energy + Delta-G solvation = -3872.504378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.56154 -40.64791 -39.33697 -37.54871 -36.30938 -35.03459 -33.03885 -32.71119 -31.89185 -30.13466 -28.76297 -28.17934 -27.52981 -26.08531 -24.90693 -23.78218 -22.61865 -21.61913 -21.28409 -20.88797 -20.43763 -19.21427 -18.86006 -17.34543 -17.25545 -16.99581 -16.70649 -16.45473 -16.12531 -15.74859 -15.65601 -15.36143 -15.03224 -14.71615 -14.61009 -14.37625 -14.26741 -14.03573 -13.81563 -13.57262 -13.30095 -13.12780 -12.96954 -12.88439 -12.68415 -12.34744 -12.28434 -12.07786 -12.01889 -11.97692 -11.83828 -11.78314 -11.77318 -11.63824 -11.49181 -11.23210 -11.02858 -10.89405 -10.33860 -10.02912 -9.93367 -8.96624 -7.93423 -5.21145 0.24819 1.38414 1.47360 1.47894 1.57842 1.68014 2.15354 2.21936 2.57149 3.39168 3.51124 3.54070 3.70944 3.71617 3.80079 3.83505 3.94756 3.97574 4.19482 4.32334 4.40103 4.41313 4.46441 4.51541 4.61312 4.65101 4.66490 4.69310 4.71790 4.81337 4.81756 4.83982 4.87901 4.93246 4.94466 5.07453 5.11759 5.15060 5.22309 5.26581 5.29880 5.37986 5.47223 5.51783 5.57337 5.60037 5.66663 5.76988 6.29947 6.43174 7.05648 7.14262 7.34977 8.14267 8.35165 9.30564 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002003 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.677269 B =13975.743784 C =14730.917851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C -0.140 4.140 4 C 0.113 3.887 5 N -0.260 5.260 6 N -0.302 5.302 7 C -0.007 4.007 8 C -0.180 4.180 9 C -0.056 4.056 10 C 0.585 3.415 11 O -0.564 6.564 12 N -0.697 5.697 13 C 0.137 3.863 14 C -0.083 4.083 15 H 0.106 0.894 16 C -0.108 4.108 17 C -0.140 4.140 18 C 0.163 3.837 19 H 0.053 0.947 20 N -0.737 5.737 21 C -0.234 4.234 22 H 0.077 0.923 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.264 1.264 27 H -0.296 1.296 28 H -0.294 1.294 29 C -0.115 4.115 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.215 0.785 40 H 0.192 0.808 41 H 0.417 0.583 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.037 0.963 48 H 0.371 0.629 49 H 0.249 0.751 50 H 0.055 0.945 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.949 -4.694 -25.404 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.007 4.007 5 N -0.048 5.048 6 N -0.134 5.134 7 C -0.183 4.183 8 C -0.209 4.209 9 C -0.184 4.184 10 C 0.371 3.629 11 O -0.444 6.444 12 N -0.349 5.349 13 C 0.014 3.986 14 C -0.103 4.103 15 H 0.124 0.876 16 C -0.146 4.146 17 C -0.180 4.180 18 C 0.055 3.945 19 H 0.071 0.929 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.094 0.906 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.189 1.189 27 H -0.224 1.224 28 H -0.222 1.222 29 C -0.154 4.154 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.209 0.791 41 H 0.255 0.745 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.859 -3.319 -25.671 30.890 hybrid contribution -1.177 -0.513 1.638 2.081 sum 15.682 -3.832 -24.032 28.951 Atomic orbital electron populations 1.21800 0.94997 1.00769 1.02017 1.21368 0.96326 0.97659 0.96379 1.21743 1.01784 0.93335 1.02926 1.22460 1.02502 0.73955 1.01774 1.45880 1.16509 1.08922 1.33491 1.73186 1.23676 0.99165 1.17419 1.24166 0.95217 0.96643 1.02239 1.22699 1.01710 0.93689 1.02821 1.21515 0.95334 0.94915 1.06684 1.17102 0.80757 0.86082 0.78975 1.90768 1.75196 1.14652 1.63765 1.45533 1.30401 1.13476 1.45456 1.21405 0.90552 0.94968 0.91674 1.21837 0.95092 0.95840 0.97493 0.87572 1.22142 0.98923 1.00191 0.93319 1.22901 0.98187 0.99819 0.97100 1.21473 0.93186 0.93813 0.86031 0.92868 1.42629 1.71148 1.06679 1.17129 1.19676 1.29011 0.92175 0.95737 0.90553 1.25566 1.03822 0.96519 1.01412 1.69828 1.54603 1.07575 1.30308 0.85099 0.77324 0.78334 0.79205 1.18854 1.22361 1.22172 1.22463 0.98997 0.98379 0.95565 0.94896 0.92442 0.91994 0.90885 0.91075 0.91092 0.92347 0.87471 0.87613 0.76810 0.79102 0.74484 0.92684 0.91483 0.89407 0.91589 0.93275 0.94442 0.79734 0.94180 0.92661 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.94 71.98 0.57 -2.09 16 2 C -0.10 -1.60 3.12 -10.79 -0.03 -1.63 16 3 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 4 C 0.11 2.07 5.41 86.38 0.47 2.54 16 5 N -0.26 -5.35 3.05 -334.69 -1.02 -6.37 16 6 N -0.30 -6.08 11.90 -57.14 -0.68 -6.76 16 7 C -0.01 -0.11 12.03 85.18 1.02 0.91 16 8 C -0.18 -2.52 10.50 22.65 0.24 -2.28 16 9 C -0.06 -1.10 5.76 40.79 0.23 -0.87 16 10 C 0.58 12.78 7.24 86.59 0.63 13.41 16 11 O -0.56 -15.56 12.37 -4.10 -0.05 -15.61 16 12 N -0.70 -11.93 5.21 -466.62 -2.43 -14.37 16 13 C 0.14 2.86 4.73 86.38 0.41 3.27 16 14 C -0.08 -1.69 2.98 -10.07 -0.03 -1.72 16 15 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 16 C -0.11 -2.33 6.15 31.32 0.19 -2.13 16 17 C -0.14 -4.58 6.51 31.67 0.21 -4.38 16 18 C 0.16 6.08 3.53 46.28 0.16 6.25 16 19 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 20 N -0.74 -36.87 5.26 -316.85 -1.67 -38.53 16 21 C -0.23 -12.92 9.98 84.03 0.84 -12.08 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 24 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 25 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 C -0.12 -3.36 5.97 31.67 0.19 -3.17 16 30 H 0.03 0.72 6.17 -2.39 -0.01 0.70 16 31 H 0.06 1.29 7.01 -2.39 -0.02 1.27 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.11 2.29 6.02 -2.39 -0.01 2.27 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.22 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.19 1.24 7.58 -2.91 -0.02 1.22 16 41 H 0.42 4.59 7.38 -92.71 -0.68 3.91 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 1.37 7.55 -2.38 -0.02 1.36 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.37 20.16 7.73 -92.70 -0.72 19.44 16 49 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.05 1.78 7.74 -2.39 -0.02 1.76 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -71.90 403.60 2.21 -69.68 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.47 Total: 32.71 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 6.23 Total: -9.27 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -5.52 Total: -125.80 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.05 Total: -15.61 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -71.90 2.21 -69.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086709708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.851 kcal (2) G-P(sol) polarization free energy of solvation -71.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds