Wall clock time and date at job start Sat Apr 11 2020 04:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 H 1.09003 * 109.47203 * 54.99067 * 3 2 1 5 5 C 1.53005 * 109.46713 * 294.99850 * 3 2 1 6 6 C 1.52993 * 109.47274 * 175.00092 * 3 2 1 7 7 C 1.50705 * 109.47103 * 184.99979 * 6 3 2 8 8 O 1.21277 * 119.99927 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00023 * 179.97438 * 7 6 3 10 10 C 1.46502 * 119.99835 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.35316 * 126.04499 * 260.02649 * 11 10 9 13 13 N 1.34949 * 107.74666 * 179.97438 * 12 11 10 14 14 H 0.96998 * 126.03184 * 179.73438 * 13 12 11 15 15 N 1.40083 * 107.92485 * 0.02562 * 13 12 11 16 16 C 1.30838 * 108.20791 * 359.97438 * 15 13 12 17 17 C 1.50698 * 125.89665 * 180.02562 * 16 15 13 18 18 H 1.09002 * 110.63873 * 181.67082 * 17 16 15 19 19 C 1.55157 * 110.72160 * 305.00212 * 17 16 15 20 20 C 1.54906 * 101.58350 * 153.86832 * 19 17 16 21 21 N 1.47428 * 104.83091 * 322.99201 * 20 19 17 22 22 C 1.36932 * 125.64985 * 204.09426 * 21 20 19 23 23 H 1.08001 * 120.00245 * 169.98004 * 22 21 20 24 24 C 1.38818 * 120.00092 * 349.98128 * 22 21 20 25 25 N 1.31626 * 119.99807 * 350.42561 * 24 22 21 26 26 Si 1.86796 * 120.00173 * 170.41911 * 24 22 21 27 27 H 1.48502 * 109.47264 * 94.14319 * 26 24 22 28 28 H 1.48506 * 109.47139 * 214.14375 * 26 24 22 29 29 H 1.48500 * 109.47436 * 334.14162 * 26 24 22 30 30 C 1.47023 * 108.70431 * 24.12391 * 21 20 19 31 31 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47186 * 300.00149 * 1 2 3 33 33 H 1.08998 * 109.46983 * 60.00486 * 1 2 3 34 34 H 1.08997 * 109.47186 * 239.99851 * 2 1 3 35 35 H 1.09005 * 109.47014 * 119.99903 * 2 1 3 36 36 H 1.08998 * 109.47308 * 60.00033 * 5 3 2 37 37 H 1.09001 * 109.46860 * 179.97438 * 5 3 2 38 38 H 1.08994 * 109.47143 * 299.99892 * 5 3 2 39 39 H 1.08992 * 109.47748 * 64.99897 * 6 3 2 40 40 H 1.09002 * 109.47261 * 304.99190 * 6 3 2 41 41 H 0.97000 * 120.00033 * 359.97438 * 9 7 6 42 42 H 1.09000 * 109.46742 * 60.00374 * 10 9 7 43 43 H 1.08995 * 109.47174 * 300.00459 * 10 9 7 44 44 H 1.07997 * 126.12367 * 359.97438 * 12 11 10 45 45 H 1.09003 * 111.00564 * 271.94114 * 19 17 16 46 46 H 1.08997 * 111.00218 * 35.79169 * 19 17 16 47 47 H 1.09001 * 110.36594 * 204.15224 * 20 19 17 48 48 H 1.09001 * 110.46117 * 81.87419 * 20 19 17 49 49 H 0.96998 * 119.99676 * 179.97438 * 25 24 22 50 50 H 1.08992 * 109.88850 * 239.52886 * 30 21 20 51 51 H 1.09000 * 110.00922 * 118.43027 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0570 2.8633 0.2492 8 8 3.2661 3.7827 0.2373 9 7 5.3761 3.1107 0.3728 10 6 5.8545 4.4903 0.4923 11 6 7.3563 4.4920 0.6175 12 6 8.0593 4.6202 1.7666 13 7 9.3712 4.5718 1.4537 14 1 10.1097 4.6420 2.0786 15 7 9.4778 4.4090 0.0665 16 6 8.2698 4.3611 -0.4336 17 6 7.9225 4.1936 -1.8904 18 1 6.8421 4.2164 -2.0330 19 6 8.6164 5.2839 -2.7490 20 6 8.7188 4.5784 -4.1243 21 7 9.0066 3.1683 -3.8045 22 6 9.6248 2.2717 -4.6347 23 1 9.9362 1.3099 -4.2549 24 6 9.8513 2.5992 -5.9645 25 7 9.3099 3.6843 -6.4765 26 14 10.9244 1.5001 -7.0274 27 1 10.0689 0.5330 -7.7610 28 1 11.6760 2.3333 -8.0002 29 1 11.8814 0.7602 -6.1661 30 6 8.5193 2.8838 -2.4469 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5490 2.1252 -1.3970 37 1 1.9983 3.1542 -1.3073 38 1 2.0699 1.5874 -2.1492 39 1 4.0030 0.9836 -0.7596 40 1 3.8571 0.8801 1.0114 41 1 6.0086 2.3754 0.3827 42 1 5.4160 4.9515 1.3773 43 1 5.5627 5.0541 -0.3936 44 1 7.6448 4.7398 2.7566 45 1 8.0000 6.1805 -2.8149 46 1 9.6055 5.5197 -2.3563 47 1 9.5307 5.0076 -4.7114 48 1 7.7761 4.6598 -4.6654 49 1 9.4685 3.9132 -7.4056 50 1 9.3464 2.5564 -1.8171 51 1 7.7510 2.1114 -2.4806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130380607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:45 Heat of formation + Delta-G solvation = 39.255616 kcal Electronic energy + Delta-G solvation = -29142.320593 eV Core-core repulsion = 25271.120867 eV Total energy + Delta-G solvation = -3871.199726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.35733 -39.78767 -37.28977 -36.60572 -34.89732 -33.07154 -31.52082 -31.07412 -30.40061 -29.09439 -27.87129 -27.50608 -25.63330 -24.61142 -23.88619 -22.03029 -20.63389 -20.34328 -20.10438 -19.80613 -18.70081 -18.05749 -16.85158 -16.74831 -15.98871 -15.69849 -15.11278 -14.88766 -14.60663 -14.54141 -14.31879 -14.14372 -13.88652 -13.66380 -13.30278 -12.81772 -12.75730 -12.58874 -12.38979 -12.05620 -12.00664 -11.89463 -11.83264 -11.57141 -11.46836 -10.96427 -10.93934 -10.85497 -10.75403 -10.73470 -10.68455 -10.52897 -10.10111 -9.98547 -9.80987 -9.75742 -9.58753 -9.13899 -9.02014 -8.60569 -8.51992 -6.72692 -5.68871 -3.00625 1.82878 2.60579 2.69102 2.86580 3.43018 3.47093 3.48778 3.51002 4.53289 4.62205 4.63560 4.67638 4.70006 4.74156 5.03124 5.10086 5.15191 5.26364 5.33539 5.40063 5.46190 5.52447 5.55474 5.56911 5.58004 5.64790 5.72437 5.77661 5.83410 5.91461 5.93887 5.94195 5.96701 6.07780 6.08834 6.29754 6.37925 6.42217 6.52733 6.53735 6.60800 6.73587 6.75332 6.98135 7.25233 7.54678 7.57650 7.65127 7.77818 7.84401 8.26978 8.32366 9.25481 9.87497 10.55705 11.44372 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.003191 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.440719 B = 8773.467634 C =11148.349413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.076 0.924 5 C -0.156 4.156 6 C -0.140 4.140 7 C 0.513 3.487 8 O -0.542 6.542 9 N -0.725 5.725 10 C 0.203 3.797 11 C -0.262 4.262 12 C 0.074 3.926 13 N -0.481 5.481 14 H 0.438 0.562 15 N -0.278 5.278 16 C 0.120 3.880 17 C -0.027 4.027 18 H 0.088 0.912 19 C -0.134 4.134 20 C 0.174 3.826 21 N -0.601 5.601 22 C -0.226 4.226 23 H 0.075 0.925 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.151 3.849 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.402 0.598 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.174 0.826 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.027 0.973 49 H 0.252 0.748 50 H 0.027 0.973 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 -1.788 19.872 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.094 0.906 5 C -0.213 4.213 6 C -0.180 4.180 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.377 5.377 10 C 0.079 3.921 11 C -0.274 4.274 12 C -0.075 4.075 13 N -0.187 5.187 14 H 0.282 0.718 15 N -0.100 5.100 16 C -0.048 4.048 17 C -0.048 4.048 18 H 0.107 0.893 19 C -0.173 4.173 20 C 0.049 3.951 21 N -0.327 5.327 22 C -0.354 4.354 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.565 5.565 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.025 3.975 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.191 0.809 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.062 0.938 50 H 0.045 0.955 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.212 -1.167 19.399 21.954 hybrid contribution 0.499 -0.854 0.069 0.991 sum -9.714 -2.021 19.468 21.851 Atomic orbital electron populations 1.21805 0.95837 1.01337 1.02051 1.21605 0.96096 0.96249 1.01937 1.20896 0.92714 0.95828 0.99853 0.90607 1.22008 1.01013 1.02332 0.95946 1.21794 0.97834 0.94090 1.04301 1.20693 0.81999 0.91669 0.75657 1.90658 1.54720 1.46685 1.49915 1.46242 1.07482 1.09320 1.74669 1.19348 0.87624 0.83010 1.02153 1.19968 0.95903 1.19295 0.92264 1.22354 0.84857 1.00643 0.99660 1.46373 1.06423 1.58436 1.07450 0.71821 1.77530 1.21525 1.24026 0.86887 1.22272 0.89555 0.96472 0.96494 1.20734 1.00145 0.98583 0.85367 0.89330 1.23076 0.99541 0.96269 0.98442 1.21406 0.99991 0.83402 0.90332 1.44436 1.68725 1.07851 1.11716 1.18996 1.29727 0.96778 0.89904 0.90766 1.24804 1.00926 0.98290 0.96421 1.69962 1.46718 1.26422 1.13418 0.86147 0.80168 0.79464 0.80245 1.21662 1.21659 1.20676 1.21234 0.95558 0.92682 0.88060 0.92992 0.92862 0.92321 0.91810 0.92168 0.92882 0.90621 0.93176 0.88628 0.89179 0.76430 0.91272 0.90651 0.80886 0.92167 0.91555 0.91266 0.95452 0.93766 0.95470 0.96222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.09 16 3 C -0.07 -0.70 2.04 -90.62 -0.18 -0.88 16 4 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 5 C -0.16 -1.69 8.69 37.16 0.32 -1.37 16 6 C -0.14 -1.27 5.17 -27.88 -0.14 -1.41 16 7 C 0.51 6.02 7.55 -10.98 -0.08 5.94 16 8 O -0.54 -8.11 13.96 5.56 0.08 -8.04 16 9 N -0.73 -7.78 5.55 -61.47 -0.34 -8.12 16 10 C 0.20 2.31 5.67 -5.19 -0.03 2.28 16 11 C -0.26 -3.13 5.47 -105.05 -0.57 -3.71 16 12 C 0.07 0.70 11.90 -17.22 -0.20 0.49 16 13 N -0.48 -5.17 7.36 30.44 0.22 -4.95 16 14 H 0.44 3.20 8.96 -182.61 -1.64 1.56 16 15 N -0.28 -4.39 12.33 33.67 0.42 -3.97 16 16 C 0.12 1.85 5.76 -82.40 -0.47 1.38 16 17 C -0.03 -0.49 3.36 -89.94 -0.30 -0.79 16 18 H 0.09 1.52 7.26 -51.93 -0.38 1.14 16 19 C -0.13 -2.64 6.52 -24.58 -0.16 -2.80 16 20 C 0.17 4.30 5.42 -2.53 -0.01 4.28 16 21 N -0.60 -15.72 3.39 -170.07 -0.58 -16.29 16 22 C -0.23 -6.42 10.24 -15.06 -0.15 -6.57 16 23 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 24 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 25 N -0.92 -27.30 10.68 55.49 0.59 -26.71 16 26 Si 0.91 22.36 29.56 -169.99 -5.03 17.33 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 C 0.15 3.24 6.83 -3.06 -0.02 3.22 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 37 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.40 3.85 8.46 -40.82 -0.35 3.51 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 44 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 47 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 48 H 0.03 0.72 8.07 -51.93 -0.42 0.31 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.03 0.60 7.67 -51.93 -0.40 0.21 16 51 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -34.38 404.85 -10.38 -44.76 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -9.95 Total: 2.02 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.90 Total: -2.14 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.31 Total: -60.04 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.08 Total: -8.04 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.38 -10.38 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130380607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.017 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds