Wall clock time and date at job start Sat Apr 11 2020 04:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47068 * 2 1 4 4 N 1.46503 * 109.47108 * 120.00291 * 2 1 3 5 5 C 1.36938 * 119.99767 * 282.26713 * 4 2 1 6 6 H 1.07995 * 119.99767 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99708 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46992 * 60.00091 * 9 7 5 11 11 H 1.48502 * 109.46781 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47303 * 300.00168 * 9 7 5 13 13 C 1.53003 * 109.46908 * 239.99724 * 2 1 3 14 14 H 1.08997 * 109.58886 * 293.01007 * 13 2 1 15 15 C 1.53194 * 109.58448 * 53.43586 * 13 2 1 16 16 C 1.53042 * 109.31209 * 174.41744 * 15 13 2 17 17 C 1.53036 * 109.53934 * 298.63294 * 16 15 13 18 18 C 1.52764 * 109.37903 * 61.24129 * 17 16 15 19 19 N 1.46917 * 109.00960 * 305.58516 * 18 17 16 20 20 C 1.34779 * 120.62970 * 233.58938 * 19 18 17 21 21 O 1.21279 * 120.00002 * 174.01568 * 20 19 18 22 22 C 1.50696 * 120.00084 * 354.01263 * 20 19 18 23 23 C 1.53002 * 109.47193 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47350 * 180.02562 * 23 22 20 25 25 N 1.46496 * 109.47409 * 179.97438 * 24 23 22 26 26 C 1.34951 * 126.03464 * 124.71312 * 25 24 23 27 27 C 1.35316 * 107.74134 * 179.84186 * 26 25 24 28 28 C 1.39867 * 107.92251 * 0.42353 * 27 26 25 29 29 N 1.30838 * 108.20508 * 359.73817 * 28 27 26 30 30 H 1.09005 * 109.47027 * 173.76729 * 1 2 3 31 31 H 1.09000 * 109.47011 * 293.76490 * 1 2 3 32 32 H 1.08994 * 109.47294 * 53.76343 * 1 2 3 33 33 H 0.97002 * 120.00065 * 102.27062 * 4 2 1 34 34 H 0.97008 * 119.99860 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.50036 * 294.36950 * 15 13 2 36 36 H 1.09006 * 109.49844 * 54.47019 * 15 13 2 37 37 H 1.09001 * 109.45629 * 58.65850 * 16 15 13 38 38 H 1.09001 * 109.45990 * 178.61071 * 16 15 13 39 39 H 1.09007 * 109.49446 * 181.31170 * 17 16 15 40 40 H 1.08992 * 109.50231 * 301.41253 * 17 16 15 41 41 H 1.09002 * 109.50542 * 185.70391 * 18 17 16 42 42 H 1.08998 * 109.43302 * 65.42728 * 18 17 16 43 43 H 1.09001 * 109.47136 * 60.00445 * 22 20 19 44 44 H 1.09007 * 109.47341 * 299.99959 * 22 20 19 45 45 H 1.09001 * 109.47104 * 59.99950 * 23 22 20 46 46 H 1.09000 * 109.47162 * 299.99876 * 23 22 20 47 47 H 1.09001 * 109.46739 * 59.99209 * 24 23 22 48 48 H 1.09000 * 109.46794 * 299.99987 * 24 23 22 49 49 H 1.07995 * 126.12737 * 0.02562 * 26 25 24 50 50 H 1.08004 * 126.04020 * 180.16446 * 27 26 25 51 51 H 1.08003 * 125.89965 * 179.71771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.0090 -0.0519 2.4074 6 1 1.6412 0.9609 2.4808 7 6 2.4722 -0.7061 3.5406 8 7 2.9208 -1.9402 3.4509 9 14 2.4601 0.1655 5.1928 10 1 1.0675 0.5455 5.5418 11 1 3.0010 -0.7428 6.2356 12 1 3.3014 1.3867 5.1144 13 6 2.0399 -0.7213 -1.2492 14 1 1.7833 -1.7790 -1.1908 15 6 1.4004 -0.1028 -2.4964 16 6 2.0176 -0.7329 -3.7471 17 6 3.5195 -0.4412 -3.7793 18 6 4.1823 -1.0585 -2.5491 19 7 3.4987 -0.5728 -1.3428 20 6 4.1958 0.0031 -0.3434 21 8 3.6112 0.4972 0.5974 22 6 5.7016 0.0331 -0.3948 23 6 6.2405 0.7379 0.8517 24 6 7.7693 0.7689 0.7993 25 7 8.2853 1.4443 1.9925 26 6 9.1769 0.9365 2.8690 27 6 9.3940 1.8703 3.8240 28 6 8.6008 2.9831 3.5261 29 7 7.9357 2.7289 2.4284 30 1 -0.3633 -1.0216 -0.1116 31 1 -0.3633 0.4141 0.9405 32 1 -0.3633 0.6074 -0.8288 33 1 2.3483 -1.6005 1.1302 34 1 3.2442 -2.3975 4.2430 35 1 0.3269 -0.2910 -2.4861 36 1 1.5819 0.9720 -2.5033 37 1 1.8573 -1.8109 -3.7273 38 1 1.5468 -0.3123 -4.6356 39 1 3.9542 -0.8704 -4.6821 40 1 3.6810 0.6367 -3.7741 41 1 5.2321 -0.7671 -2.5166 42 1 4.1039 -2.1444 -2.6015 43 1 6.0240 0.5724 -1.2854 44 1 6.0844 -0.9870 -0.4290 45 1 5.9180 0.1984 1.7422 46 1 5.8578 1.7579 0.8864 47 1 8.0913 1.3087 -0.0913 48 1 8.1524 -0.2509 0.7644 49 1 9.6372 -0.0390 2.8160 50 1 10.0588 1.7719 4.6695 51 1 8.5464 3.8947 4.1027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566534708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:18 Heat of formation + Delta-G solvation = 90.819110 kcal Electronic energy + Delta-G solvation = -30659.777855 eV Core-core repulsion = 26790.814090 eV Total energy + Delta-G solvation = -3868.963765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.94318 -40.07503 -37.05711 -35.51229 -34.55707 -32.54391 -32.18374 -31.23618 -29.86435 -29.81013 -27.79993 -26.88925 -24.67462 -24.17600 -22.83908 -22.22649 -20.96119 -20.53697 -20.22407 -19.85756 -18.63970 -17.19585 -16.63695 -16.13933 -15.67095 -15.43804 -14.96681 -14.67260 -14.33221 -14.17566 -14.09067 -13.76720 -13.64506 -13.32887 -13.10053 -13.00836 -12.79486 -12.67047 -12.39336 -12.15578 -11.95458 -11.84138 -11.65367 -11.36789 -11.30311 -11.08113 -10.87309 -10.82581 -10.66615 -10.59872 -10.55076 -10.36547 -10.35522 -10.09910 -9.67048 -9.37826 -9.27023 -8.61962 -8.45551 -8.14193 -7.88967 -6.41616 -5.45890 -2.66049 2.06050 2.66434 3.00622 3.51289 3.57464 3.61768 3.64605 3.68214 4.55891 4.80242 4.81631 4.86845 4.92065 4.96385 5.03906 5.13390 5.22085 5.24374 5.36689 5.42936 5.47510 5.52514 5.57067 5.65559 5.72440 5.76528 5.83420 5.85016 5.88362 5.91746 5.94799 6.06762 6.11664 6.12240 6.16074 6.18723 6.36904 6.40223 6.48521 6.53359 6.69625 6.79451 6.83251 7.01515 7.11391 7.16221 7.43902 7.86707 7.99368 8.12412 8.71250 9.17073 9.83541 10.39264 10.75078 11.78449 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008767 B = 0.004742 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.916124 B = 5903.739649 C = 8439.857562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.182 3.818 3 H 0.063 0.937 4 N -0.692 5.692 5 C -0.175 4.175 6 H 0.061 0.939 7 C -0.026 4.026 8 N -0.947 5.947 9 Si 0.894 3.106 10 H -0.292 1.292 11 H -0.296 1.296 12 H -0.291 1.291 13 C 0.148 3.852 14 H 0.061 0.939 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.134 4.134 18 C 0.113 3.887 19 N -0.620 5.620 20 C 0.471 3.529 21 O -0.426 6.426 22 C -0.128 4.128 23 C -0.114 4.114 24 C 0.134 3.866 25 N -0.365 5.365 26 C 0.052 3.948 27 C -0.280 4.280 28 C 0.038 3.962 29 N -0.288 5.288 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.376 0.624 34 H 0.247 0.753 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.171 0.829 50 H 0.144 0.856 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 2.213 -14.707 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 H 0.081 0.919 4 N -0.332 5.332 5 C -0.307 4.307 6 H 0.079 0.921 7 C -0.219 4.219 8 N -0.599 5.599 9 Si 0.728 3.272 10 H -0.219 1.219 11 H -0.222 1.222 12 H -0.218 1.218 13 C 0.045 3.955 14 H 0.079 0.921 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.173 4.173 18 C -0.011 4.011 19 N -0.358 5.358 20 C 0.255 3.745 21 O -0.292 6.292 22 C -0.169 4.169 23 C -0.153 4.153 24 C 0.013 3.987 25 N -0.148 5.148 26 C -0.094 4.094 27 C -0.310 4.310 28 C -0.148 4.148 29 N -0.110 5.110 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.209 0.791 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.188 0.812 50 H 0.161 0.839 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.572 3.012 -14.948 17.493 hybrid contribution 0.843 -0.452 1.501 1.780 sum 9.414 2.560 -13.447 16.613 Atomic orbital electron populations 1.22581 1.00020 1.00027 1.00390 1.20429 0.90215 0.97042 0.85110 0.91940 1.42310 1.73897 1.14194 1.02812 1.18934 1.30904 0.96085 0.84733 0.92081 1.24489 1.03659 0.96610 0.97180 1.69629 1.51122 1.11466 1.27721 0.86414 0.77258 0.78494 0.85067 1.21939 1.22243 1.21795 1.21474 0.79181 0.99291 0.95598 0.92061 1.21996 1.00025 1.00537 0.94144 1.21505 0.95271 1.00848 0.97949 1.21843 0.96331 1.01403 0.97689 1.21446 0.96449 0.98321 0.84845 1.47848 1.06854 1.62887 1.18230 1.20339 0.88943 0.82502 0.82682 1.91200 1.68292 1.39201 1.30508 1.21518 0.94924 1.01746 0.98741 1.21569 0.91215 1.03398 0.99095 1.21801 0.96326 0.96303 0.84233 1.48750 1.32897 1.12113 1.20999 1.22556 0.94874 1.00001 0.92014 1.21463 1.09796 0.95511 1.04218 1.23855 0.95783 0.99915 0.95246 1.77377 1.22424 0.96123 1.15053 0.94019 0.92513 0.94574 0.79096 0.94359 0.90858 0.91740 0.92032 0.92242 0.91429 0.91760 0.90418 0.92325 0.90290 0.90035 0.89595 0.89939 0.90170 0.88893 0.81190 0.83855 0.80349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.68 37.16 0.32 -2.88 16 2 C 0.18 3.76 1.78 -67.93 -0.12 3.64 16 3 H 0.06 1.44 6.47 -51.93 -0.34 1.11 16 4 N -0.69 -17.74 3.13 -53.42 -0.17 -17.90 16 5 C -0.17 -5.08 7.97 -15.06 -0.12 -5.20 16 6 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 8 N -0.95 -29.77 13.06 55.49 0.72 -29.04 16 9 Si 0.89 24.42 29.55 -169.99 -5.02 19.39 16 10 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 11 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 12 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 13 C 0.15 2.45 2.58 -67.60 -0.17 2.28 16 14 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 15 C -0.13 -1.66 4.64 -26.61 -0.12 -1.79 16 16 C -0.12 -1.22 5.89 -26.69 -0.16 -1.37 16 17 C -0.13 -1.28 6.06 -26.83 -0.16 -1.45 16 18 C 0.11 1.26 6.30 -3.94 -0.02 1.23 16 19 N -0.62 -9.63 2.98 -165.49 -0.49 -10.12 16 20 C 0.47 8.60 7.36 -10.99 -0.08 8.52 16 21 O -0.43 -9.97 8.60 5.56 0.05 -9.92 16 22 C -0.13 -1.78 4.12 -27.88 -0.11 -1.89 16 23 C -0.11 -1.84 4.69 -26.73 -0.13 -1.97 16 24 C 0.13 1.66 6.51 -4.04 -0.03 1.63 16 25 N -0.37 -5.45 3.68 -61.37 -0.23 -5.68 16 26 C 0.05 0.68 11.45 -17.22 -0.20 0.48 16 27 C -0.28 -3.65 10.80 -40.01 -0.43 -4.08 16 28 C 0.04 0.55 12.03 -17.37 -0.21 0.34 16 29 N -0.29 -4.91 12.42 30.62 0.38 -4.53 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.19 7.98 -51.93 -0.41 0.78 16 32 H 0.04 0.57 6.86 -51.93 -0.36 0.21 16 33 H 0.38 10.40 7.74 -40.82 -0.32 10.09 16 34 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.07 0.91 6.84 -51.93 -0.36 0.55 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.72 5.97 -51.93 -0.31 0.41 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.85 7.44 -51.93 -0.39 0.47 16 44 H 0.08 1.01 8.13 -51.92 -0.42 0.58 16 45 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 46 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 49 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 50 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 51 H 0.18 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -36.25 396.36 -9.40 -45.65 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.78 Total: 9.59 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.84 Total: -3.40 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: 0.22 Total: -67.28 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.05 Total: -9.92 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.02 Total: 19.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.25 -9.40 -45.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.471 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds