Wall clock time and date at job start Sat Apr 11 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47068 * 2 1 4 4 N 1.46503 * 109.47108 * 120.00291 * 2 1 3 5 5 C 1.36938 * 119.99767 * 282.26713 * 4 2 1 6 6 H 1.07995 * 119.99767 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99708 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46992 * 60.00091 * 9 7 5 11 11 H 1.48502 * 109.46781 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47303 * 300.00168 * 9 7 5 13 13 C 1.53003 * 109.46908 * 239.99724 * 2 1 3 14 14 H 1.08997 * 109.58886 * 293.01007 * 13 2 1 15 15 C 1.53194 * 109.58448 * 53.43586 * 13 2 1 16 16 C 1.53042 * 109.31209 * 174.41744 * 15 13 2 17 17 C 1.53036 * 109.53934 * 298.63294 * 16 15 13 18 18 C 1.52764 * 109.37903 * 61.24129 * 17 16 15 19 19 N 1.46917 * 109.00960 * 305.58516 * 18 17 16 20 20 C 1.34779 * 120.62970 * 233.58938 * 19 18 17 21 21 O 1.21279 * 120.00002 * 174.01568 * 20 19 18 22 22 C 1.50696 * 120.00084 * 354.01263 * 20 19 18 23 23 C 1.53002 * 109.47193 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47350 * 180.02562 * 23 22 20 25 25 N 1.46496 * 109.47409 * 179.97438 * 24 23 22 26 26 C 1.34951 * 126.03464 * 124.71312 * 25 24 23 27 27 C 1.35316 * 107.74134 * 179.84186 * 26 25 24 28 28 C 1.39867 * 107.92251 * 0.42353 * 27 26 25 29 29 N 1.30838 * 108.20508 * 359.73817 * 28 27 26 30 30 H 1.09005 * 109.47027 * 173.76729 * 1 2 3 31 31 H 1.09000 * 109.47011 * 293.76490 * 1 2 3 32 32 H 1.08994 * 109.47294 * 53.76343 * 1 2 3 33 33 H 0.97002 * 120.00065 * 102.27062 * 4 2 1 34 34 H 0.97008 * 119.99860 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.50036 * 294.36950 * 15 13 2 36 36 H 1.09006 * 109.49844 * 54.47019 * 15 13 2 37 37 H 1.09001 * 109.45629 * 58.65850 * 16 15 13 38 38 H 1.09001 * 109.45990 * 178.61071 * 16 15 13 39 39 H 1.09007 * 109.49446 * 181.31170 * 17 16 15 40 40 H 1.08992 * 109.50231 * 301.41253 * 17 16 15 41 41 H 1.09002 * 109.50542 * 185.70391 * 18 17 16 42 42 H 1.08998 * 109.43302 * 65.42728 * 18 17 16 43 43 H 1.09001 * 109.47136 * 60.00445 * 22 20 19 44 44 H 1.09007 * 109.47341 * 299.99959 * 22 20 19 45 45 H 1.09001 * 109.47104 * 59.99950 * 23 22 20 46 46 H 1.09000 * 109.47162 * 299.99876 * 23 22 20 47 47 H 1.09001 * 109.46739 * 59.99209 * 24 23 22 48 48 H 1.09000 * 109.46794 * 299.99987 * 24 23 22 49 49 H 1.07995 * 126.12737 * 0.02562 * 26 25 24 50 50 H 1.08004 * 126.04020 * 180.16446 * 27 26 25 51 51 H 1.08003 * 125.89965 * 179.71771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.0090 -0.0519 2.4074 6 1 1.6412 0.9609 2.4808 7 6 2.4722 -0.7061 3.5406 8 7 2.9208 -1.9402 3.4509 9 14 2.4601 0.1655 5.1928 10 1 1.0675 0.5455 5.5418 11 1 3.0010 -0.7428 6.2356 12 1 3.3014 1.3867 5.1144 13 6 2.0399 -0.7213 -1.2492 14 1 1.7833 -1.7790 -1.1908 15 6 1.4004 -0.1028 -2.4964 16 6 2.0176 -0.7329 -3.7471 17 6 3.5195 -0.4412 -3.7793 18 6 4.1823 -1.0585 -2.5491 19 7 3.4987 -0.5728 -1.3428 20 6 4.1958 0.0031 -0.3434 21 8 3.6112 0.4972 0.5974 22 6 5.7016 0.0331 -0.3948 23 6 6.2405 0.7379 0.8517 24 6 7.7693 0.7689 0.7993 25 7 8.2853 1.4443 1.9925 26 6 9.1769 0.9365 2.8690 27 6 9.3940 1.8703 3.8240 28 6 8.6008 2.9831 3.5261 29 7 7.9357 2.7289 2.4284 30 1 -0.3633 -1.0216 -0.1116 31 1 -0.3633 0.4141 0.9405 32 1 -0.3633 0.6074 -0.8288 33 1 2.3483 -1.6005 1.1302 34 1 3.2442 -2.3975 4.2430 35 1 0.3269 -0.2910 -2.4861 36 1 1.5819 0.9720 -2.5033 37 1 1.8573 -1.8109 -3.7273 38 1 1.5468 -0.3123 -4.6356 39 1 3.9542 -0.8704 -4.6821 40 1 3.6810 0.6367 -3.7741 41 1 5.2321 -0.7671 -2.5166 42 1 4.1039 -2.1444 -2.6015 43 1 6.0240 0.5724 -1.2854 44 1 6.0844 -0.9870 -0.4290 45 1 5.9180 0.1984 1.7422 46 1 5.8578 1.7579 0.8864 47 1 8.0913 1.3087 -0.0913 48 1 8.1524 -0.2509 0.7644 49 1 9.6372 -0.0390 2.8160 50 1 10.0588 1.7719 4.6695 51 1 8.5464 3.8947 4.1027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566534708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:17 Heat of formation + Delta-G solvation = 66.949476 kcal Electronic energy + Delta-G solvation = -30660.812920 eV Core-core repulsion = 26790.814090 eV Total energy + Delta-G solvation = -3869.998830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.99288 -41.39962 -38.30612 -37.06809 -35.86825 -34.20800 -33.58816 -32.40138 -31.48260 -30.88223 -29.43820 -28.02834 -26.15983 -25.66904 -24.21199 -23.52320 -21.98796 -21.69129 -21.37124 -21.24878 -20.03798 -18.77867 -18.14234 -17.37798 -16.90859 -16.71718 -16.63349 -16.03763 -15.61589 -15.45949 -15.23427 -15.15674 -14.83517 -14.77429 -14.33461 -14.28288 -14.15566 -13.79279 -13.67175 -13.56924 -13.45128 -13.03757 -13.00913 -12.83205 -12.74628 -12.63058 -12.51940 -12.40663 -12.18387 -11.94501 -11.84232 -11.68146 -11.61157 -11.48893 -11.33564 -11.14668 -10.76834 -10.37926 -9.67567 -9.49171 -9.30708 -8.47584 -7.78936 -4.94415 1.01622 1.36204 1.40436 1.44818 1.68809 1.96561 2.18966 2.33874 2.62205 3.52811 3.54668 3.74383 3.86545 3.92793 3.95158 4.05520 4.08861 4.16491 4.21135 4.33434 4.34928 4.36725 4.42318 4.44259 4.52760 4.66857 4.69538 4.73467 4.77169 4.85434 4.89028 4.90903 4.96386 5.08163 5.09304 5.10197 5.15202 5.19823 5.22194 5.30418 5.33282 5.43457 5.50238 5.58149 5.63622 5.76518 6.02017 6.20173 6.43110 6.79686 6.85009 7.49497 7.81281 8.27466 8.50987 9.45879 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008767 B = 0.004742 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.916124 B = 5903.739649 C = 8439.857562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.035 0.965 4 N -0.693 5.693 5 C -0.154 4.154 6 H 0.046 0.954 7 C -0.086 4.086 8 N -0.975 5.975 9 Si 0.945 3.055 10 H -0.282 1.282 11 H -0.295 1.295 12 H -0.303 1.303 13 C 0.152 3.848 14 H 0.054 0.946 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.618 5.618 20 C 0.460 3.540 21 O -0.497 6.497 22 C -0.117 4.117 23 C -0.098 4.098 24 C 0.137 3.863 25 N -0.379 5.379 26 C 0.050 3.950 27 C -0.291 4.291 28 C 0.026 3.974 29 N -0.344 5.344 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.363 0.637 34 H 0.239 0.761 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.026 0.974 46 H 0.044 0.956 47 H 0.107 0.893 48 H 0.129 0.871 49 H 0.209 0.791 50 H 0.169 0.831 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 1.343 -17.912 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.053 0.947 4 N -0.331 5.331 5 C -0.287 4.287 6 H 0.064 0.936 7 C -0.276 4.276 8 N -0.630 5.630 9 Si 0.778 3.222 10 H -0.209 1.209 11 H -0.222 1.222 12 H -0.231 1.231 13 C 0.048 3.952 14 H 0.072 0.928 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.167 4.167 18 C -0.018 4.018 19 N -0.355 5.355 20 C 0.247 3.753 21 O -0.368 6.368 22 C -0.157 4.157 23 C -0.137 4.137 24 C 0.017 3.983 25 N -0.162 5.162 26 C -0.096 4.096 27 C -0.320 4.320 28 C -0.159 4.159 29 N -0.166 5.166 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.195 0.805 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.140 0.860 44 H 0.125 0.875 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.125 0.875 48 H 0.147 0.853 49 H 0.226 0.774 50 H 0.186 0.814 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.028 2.153 -18.236 20.922 hybrid contribution 0.379 -0.120 2.386 2.419 sum 10.408 2.032 -15.850 19.070 Atomic orbital electron populations 1.22431 0.98475 1.00822 1.00277 1.20504 0.91052 0.95752 0.85454 0.94720 1.42326 1.73935 1.13505 1.03361 1.19014 1.28342 0.95085 0.86262 0.93610 1.25006 1.05308 0.97551 0.99737 1.69746 1.53165 1.12448 1.27667 0.85588 0.77280 0.76998 0.82339 1.20938 1.22177 1.23094 1.21322 0.80447 0.98357 0.95121 0.92793 1.21932 1.00416 0.99924 0.93662 1.21510 0.95856 1.01014 0.96859 1.21831 0.95658 1.01240 0.97934 1.21831 0.97607 0.98973 0.83360 1.48000 1.06557 1.61789 1.19190 1.21208 0.90928 0.81017 0.82174 1.91167 1.69918 1.42609 1.33105 1.21496 0.91585 1.03480 0.99130 1.21304 0.94339 1.00312 0.97794 1.21965 0.93128 0.98567 0.84666 1.48989 1.33472 1.11751 1.21983 1.23276 0.93927 1.01298 0.91117 1.21880 1.09994 0.95005 1.05145 1.24377 0.95428 1.01277 0.94853 1.77300 1.24443 0.98077 1.16826 0.93461 0.95429 0.91031 0.80537 0.95177 0.90109 0.92526 0.91488 0.90143 0.88212 0.92165 0.87946 0.91409 0.86032 0.87493 0.95495 0.93754 0.87533 0.85345 0.77441 0.81362 0.78451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.10 8.68 71.98 0.62 -5.47 16 2 C 0.18 7.71 1.78 44.99 0.08 7.79 16 3 H 0.03 1.70 6.47 -2.39 -0.02 1.68 16 4 N -0.69 -37.18 3.13 -322.93 -1.01 -38.19 16 5 C -0.15 -9.41 7.97 84.03 0.67 -8.74 16 6 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 7 C -0.09 -5.45 5.50 84.86 0.47 -4.98 16 8 N -0.97 -63.69 13.06 21.65 0.28 -63.40 16 9 Si 0.94 52.51 29.55 68.60 2.03 54.54 16 10 H -0.28 -15.06 7.11 99.48 0.71 -14.36 16 11 H -0.30 -16.25 7.11 99.48 0.71 -15.55 16 12 H -0.30 -17.20 7.11 99.48 0.71 -16.49 16 13 C 0.15 4.92 2.58 44.98 0.12 5.04 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.12 -2.86 4.64 30.67 0.14 -2.72 16 16 C -0.11 -1.91 5.89 30.62 0.18 -1.73 16 17 C -0.13 -1.88 6.06 30.53 0.19 -1.69 16 18 C 0.10 1.93 6.30 86.22 0.54 2.47 16 19 N -0.62 -18.48 2.98 -795.87 -2.37 -20.85 16 20 C 0.46 16.97 7.36 87.66 0.65 17.61 16 21 O -0.50 -24.61 8.60 -3.03 -0.03 -24.64 16 22 C -0.12 -3.07 4.12 29.85 0.12 -2.94 16 23 C -0.10 -3.27 4.69 30.60 0.14 -3.13 16 24 C 0.14 3.18 6.51 86.38 0.56 3.74 16 25 N -0.38 -11.18 3.68 -348.07 -1.28 -12.46 16 26 C 0.05 1.22 11.45 83.54 0.96 2.18 16 27 C -0.29 -7.31 10.80 21.99 0.24 -7.07 16 28 C 0.03 0.76 12.03 85.24 1.02 1.78 16 29 N -0.34 -12.10 12.42 -57.02 -0.71 -12.81 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.03 1.17 7.98 -2.39 -0.02 1.16 16 32 H 0.07 2.19 6.86 -2.39 -0.02 2.17 16 33 H 0.36 20.98 7.74 -92.71 -0.72 20.26 16 34 H 0.24 15.41 8.31 -92.70 -0.77 14.64 16 35 H 0.08 1.79 6.84 -2.39 -0.02 1.77 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.40 5.97 -2.39 -0.01 1.38 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.12 2.18 7.44 -2.39 -0.02 2.16 16 44 H 0.11 2.32 8.13 -2.38 -0.02 2.30 16 45 H 0.03 1.18 8.10 -2.39 -0.02 1.16 16 46 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 47 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 48 H 0.13 2.05 8.07 -2.39 -0.02 2.03 16 49 H 0.21 3.20 8.06 -2.91 -0.02 3.17 16 50 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 51 H 0.20 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -87.67 396.36 3.80 -83.86 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.19 Total: 31.81 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.70 Total: 2.14 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -5.09 Total: -147.71 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.03 Total: -24.64 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.03 Total: 54.54 kcal Total: -87.67 3.80 -83.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.812 kcal (2) G-P(sol) polarization free energy of solvation -87.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds