Wall clock time and date at job start Sat Apr 11 2020 04:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47054 * 2 1 4 4 C 1.53003 * 109.46957 * 240.00189 * 2 1 3 5 5 N 1.46498 * 109.47114 * 185.00458 * 4 2 1 6 6 C 1.46502 * 119.99414 * 269.99974 * 5 4 2 7 7 C 1.36935 * 120.00441 * 89.99394 * 5 4 2 8 8 H 1.07997 * 119.99935 * 22.33726 * 7 5 4 9 9 C 1.38814 * 119.99972 * 202.33806 * 7 5 4 10 10 N 1.31620 * 120.00128 * 11.36415 * 9 7 5 11 11 Si 1.86796 * 119.99827 * 191.36466 * 9 7 5 12 12 H 1.48499 * 109.47378 * 89.99629 * 11 9 7 13 13 H 1.48502 * 109.47328 * 210.00196 * 11 9 7 14 14 H 1.48508 * 109.47261 * 329.99726 * 11 9 7 15 15 N 1.46498 * 109.47050 * 120.00146 * 2 1 3 16 16 C 1.34779 * 119.99766 * 274.99673 * 15 2 1 17 17 O 1.21611 * 120.00236 * 0.02562 * 16 15 2 18 18 C 1.47429 * 120.00072 * 180.02562 * 16 15 2 19 19 C 1.38043 * 126.41432 * 0.34557 * 18 16 15 20 20 N 1.34263 * 107.41955 * 180.12251 * 19 18 16 21 21 C 1.46498 * 125.75529 * 179.84391 * 20 19 18 22 22 N 1.39936 * 108.48569 * 359.58237 * 20 19 18 23 23 C 1.30442 * 108.90063 * 0.26233 * 22 20 19 24 24 C 1.50699 * 125.98965 * 180.02562 * 23 22 20 25 25 C 1.54268 * 110.03055 * 57.88567 * 24 23 22 26 26 C 1.54968 * 104.16429 * 217.13592 * 25 24 23 27 27 C 1.54895 * 102.77305 * 37.88898 * 26 25 24 28 28 C 1.53873 * 110.03613 * 300.67393 * 24 23 22 29 29 H 1.09007 * 109.46704 * 300.00172 * 1 2 3 30 30 H 1.08997 * 109.47202 * 59.99760 * 1 2 3 31 31 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46658 * 304.99934 * 4 2 1 33 33 H 1.08997 * 109.47362 * 64.99645 * 4 2 1 34 34 H 1.08994 * 109.47627 * 94.22384 * 6 5 4 35 35 H 1.09005 * 109.46522 * 214.22310 * 6 5 4 36 36 H 1.08996 * 109.47244 * 334.21967 * 6 5 4 37 37 H 0.97000 * 120.00007 * 179.97438 * 10 9 7 38 38 H 0.96991 * 120.00293 * 94.99738 * 15 2 1 39 39 H 1.08005 * 126.28944 * 359.96922 * 19 18 16 40 40 H 1.08993 * 109.47008 * 269.71705 * 21 20 19 41 41 H 1.09006 * 109.47144 * 29.71888 * 21 20 19 42 42 H 1.08999 * 109.47148 * 149.71400 * 21 20 19 43 43 H 1.08999 * 110.01846 * 179.27371 * 24 23 22 44 44 H 1.09005 * 110.48942 * 335.78455 * 25 24 23 45 45 H 1.09007 * 110.48890 * 98.42391 * 25 24 23 46 46 H 1.08998 * 110.71559 * 279.57481 * 26 25 24 47 47 H 1.08997 * 110.76524 * 156.21800 * 26 25 24 48 48 H 1.08997 * 110.48360 * 203.41131 * 27 26 25 49 49 H 1.08991 * 110.60001 * 80.81889 * 27 26 25 50 50 H 1.08998 * 110.03057 * 238.56930 * 28 24 23 51 51 H 1.09001 * 110.03006 * 359.94204 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5338 -2.8399 -0.5086 9 6 5.3863 -1.8326 -0.1264 10 7 5.9795 -0.6613 -0.0339 11 14 6.2955 -3.3829 0.3827 12 1 7.0229 -3.9370 -0.7874 13 1 7.2650 -3.0572 1.4594 14 1 5.3215 -4.3871 0.8810 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0182 2.3571 17 8 1.8575 1.1616 2.4118 18 6 2.6390 -0.7131 3.5607 19 6 3.0102 -2.0398 3.6468 20 7 3.3928 -2.2688 4.9133 21 6 3.8625 -3.5496 5.4473 22 7 3.2730 -1.0762 5.6355 23 6 2.8253 -0.1440 4.8405 24 6 2.5548 1.2891 5.2202 25 6 3.8389 1.9403 5.7743 26 6 3.3351 2.8637 6.9123 27 6 2.1944 2.0314 7.5490 28 6 1.5095 1.3473 6.3479 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.6022 0.9455 -0.9803 35 1 5.2404 -0.2029 -2.1812 36 1 3.7810 0.7483 -2.5471 37 1 6.8887 -0.6031 0.2991 38 1 2.2490 -1.6317 1.1526 39 1 2.9934 -2.7617 2.8437 40 1 3.0141 -4.1164 5.8306 41 1 4.3503 -4.1169 4.6546 42 1 4.5726 -3.3683 6.2541 43 1 2.1992 1.8443 4.3523 44 1 4.5121 1.1798 6.1702 45 1 4.3353 2.5245 4.9995 46 1 2.9508 3.7999 6.5076 47 1 4.1273 3.0511 7.6372 48 1 1.4916 2.6825 8.0688 49 1 2.5994 1.2855 8.2328 50 1 0.6469 1.9315 6.0275 51 1 1.1971 0.3390 6.6198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:16 Heat of formation + Delta-G solvation = 47.072906 kcal Electronic energy + Delta-G solvation = -30742.009416 eV Core-core repulsion = 26871.148673 eV Total energy + Delta-G solvation = -3870.860743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.15092 -38.59925 -37.75586 -36.15514 -33.89902 -33.16349 -31.55530 -30.52632 -29.26507 -28.90612 -28.48647 -26.18268 -26.05054 -25.59447 -22.74575 -21.56676 -21.30577 -20.47839 -20.11994 -19.40282 -18.58495 -17.32814 -16.65271 -15.79686 -15.51907 -15.31181 -15.23046 -14.96499 -14.81170 -14.09915 -13.72055 -13.65852 -13.27624 -13.18543 -13.05300 -12.99437 -12.71343 -12.60025 -12.52131 -12.15941 -11.80645 -11.37065 -11.27469 -11.24153 -11.08520 -10.97037 -10.91810 -10.87685 -10.74756 -10.52272 -10.43428 -10.35713 -10.34284 -10.19414 -10.07257 -9.84691 -9.02159 -8.95607 -8.59581 -8.36727 -8.02354 -6.77929 -5.75584 -3.21274 1.90115 2.56347 2.59068 3.23466 3.31972 3.36270 4.02965 4.24944 4.40925 4.52172 4.82439 4.85613 4.87772 5.03114 5.10923 5.25981 5.34969 5.36475 5.49889 5.54046 5.63596 5.70378 5.75662 5.81591 5.82202 5.86167 5.89743 5.98672 6.04072 6.05227 6.08197 6.16422 6.21426 6.24480 6.31338 6.45411 6.46640 6.49721 6.60838 6.70165 6.77413 6.87578 6.97176 7.07380 7.38839 7.44937 7.67890 7.81142 7.90495 8.34919 8.48513 9.14460 9.19004 9.83447 10.34220 11.28591 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.004621 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.905982 B = 6058.269400 C = 7216.950523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.256 4.256 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.287 1.287 13 H -0.293 1.293 14 H -0.281 1.281 15 N -0.686 5.686 16 C 0.598 3.402 17 O -0.563 6.563 18 C -0.272 4.272 19 C 0.104 3.896 20 N -0.369 5.369 21 C 0.100 3.900 22 N -0.304 5.304 23 C 0.140 3.860 24 C -0.024 4.024 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.110 4.110 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.043 0.957 36 H -0.004 1.004 37 H 0.252 0.748 38 H 0.399 0.601 39 H 0.181 0.819 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -1.726 9.999 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.386 4.386 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.206 1.206 15 N -0.335 5.335 16 C 0.385 3.615 17 O -0.444 6.444 18 C -0.287 4.287 19 C -0.047 4.047 20 N -0.147 5.147 21 C -0.041 4.041 22 N -0.125 5.125 23 C -0.027 4.027 24 C -0.045 4.045 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.158 4.158 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.062 0.938 38 H 0.234 0.766 39 H 0.198 0.802 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.519 -1.320 11.283 13.623 hybrid contribution 0.755 -1.431 -0.585 1.721 sum -6.764 -2.752 10.698 12.952 Atomic orbital electron populations 1.22160 0.97059 1.01096 1.01498 1.21768 0.91643 0.98425 0.86912 0.90499 1.21185 0.85912 0.97803 0.93721 1.43863 0.98917 1.22595 1.66618 1.20788 0.92901 0.90484 0.93853 1.19032 0.97118 0.89374 1.33089 0.91736 1.24971 0.98655 0.95867 0.99513 1.70057 1.13272 1.21399 1.49159 0.86470 0.80107 0.82985 0.78174 1.21454 1.21905 1.20646 1.45519 1.65557 1.13963 1.08421 1.17102 0.76579 0.85781 0.82052 1.90605 1.53047 1.15586 1.85183 1.20341 1.18439 0.93612 0.96312 1.23118 0.95889 0.97580 0.88093 1.48180 1.50026 1.09263 1.07222 1.21897 1.00603 0.80453 1.01174 1.77022 1.25312 0.90406 1.19774 1.22241 0.94777 0.95627 0.90089 1.20600 0.95840 0.87814 1.00201 1.22425 0.96644 0.98481 0.97606 1.22494 0.97788 0.98283 0.97445 1.22331 0.97444 0.98650 0.97417 1.22145 0.97639 1.00749 0.94327 0.92868 0.92414 0.93199 0.93497 0.93049 0.95350 0.93802 0.98593 0.93773 0.76602 0.80201 0.90648 0.89274 0.89244 0.86195 0.91406 0.91320 0.91437 0.91852 0.92074 0.91793 0.91614 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.26 2.88 -67.93 -0.20 2.06 16 3 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.70 5.36 -4.04 -0.02 2.68 16 5 N -0.60 -14.00 2.82 -181.12 -0.51 -14.51 16 6 C 0.16 3.99 9.01 59.85 0.54 4.53 16 7 C -0.26 -6.33 8.02 -15.06 -0.12 -6.45 16 8 H 0.06 1.52 7.84 -52.49 -0.41 1.11 16 9 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 10 N -0.89 -25.20 10.59 55.49 0.59 -24.62 16 11 Si 0.89 20.32 29.57 -169.99 -5.03 15.29 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 N -0.69 -13.35 4.48 -54.88 -0.25 -13.60 16 16 C 0.60 12.45 7.78 -12.52 -0.10 12.35 16 17 O -0.56 -12.88 14.24 5.27 0.08 -12.80 16 18 C -0.27 -5.20 6.13 -105.07 -0.64 -5.85 16 19 C 0.10 1.71 10.99 -16.56 -0.18 1.53 16 20 N -0.37 -5.65 3.98 -67.60 -0.27 -5.92 16 21 C 0.10 1.03 11.44 59.85 0.68 1.71 16 22 N -0.30 -5.24 12.26 33.89 0.42 -4.83 16 23 C 0.14 2.55 5.49 -82.02 -0.45 2.10 16 24 C -0.02 -0.40 3.28 -90.65 -0.30 -0.70 16 25 C -0.11 -1.72 6.36 -25.03 -0.16 -1.88 16 26 C -0.12 -1.48 6.91 -24.69 -0.17 -1.65 16 27 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 28 C -0.11 -1.52 6.45 -25.62 -0.17 -1.69 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 35 H 0.04 1.14 7.19 -51.93 -0.37 0.77 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.40 7.49 6.32 -40.82 -0.26 7.24 16 39 H 0.18 2.58 7.46 -52.48 -0.39 2.19 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.12 2.25 5.65 -51.93 -0.29 1.95 16 44 H 0.07 1.08 7.67 -51.93 -0.40 0.69 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -31.72 405.32 -8.80 -40.52 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.74 Total: 9.12 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.19 Total: 5.23 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.02 Total: -63.47 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.72 -8.80 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.590 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds