Wall clock time and date at job start Sat Apr 11 2020 04:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46867 * 2 1 4 4 C 1.52997 * 109.47527 * 120.00509 * 2 1 3 5 5 N 1.46506 * 109.46989 * 175.00347 * 4 2 1 6 6 C 1.46504 * 119.99532 * 269.99782 * 5 4 2 7 7 C 1.36932 * 120.00454 * 90.00150 * 5 4 2 8 8 H 1.08006 * 119.99835 * 336.80915 * 7 5 4 9 9 C 1.38812 * 120.00256 * 157.08290 * 7 5 4 10 10 N 1.31614 * 119.99812 * 156.20250 * 9 7 5 11 11 Si 1.86796 * 120.00065 * 336.20800 * 9 7 5 12 12 H 1.48505 * 109.46886 * 84.92045 * 11 9 7 13 13 H 1.48492 * 109.47026 * 204.91946 * 11 9 7 14 14 H 1.48497 * 109.47183 * 324.92060 * 11 9 7 15 15 N 1.46505 * 109.47121 * 240.01078 * 2 1 3 16 16 C 1.34772 * 120.00144 * 84.99423 * 15 2 1 17 17 O 1.21603 * 120.00362 * 359.97438 * 16 15 2 18 18 C 1.47431 * 119.99829 * 180.02562 * 16 15 2 19 19 C 1.38043 * 126.41347 * 359.68187 * 18 16 15 20 20 N 1.34262 * 107.41529 * 179.87234 * 19 18 16 21 21 C 1.46504 * 125.75473 * 180.15000 * 20 19 18 22 22 N 1.39938 * 108.49270 * 0.39878 * 20 19 18 23 23 C 1.30450 * 108.89441 * 359.74469 * 22 20 19 24 24 C 1.50699 * 125.98480 * 179.97438 * 23 22 20 25 25 C 1.54266 * 110.03286 * 57.21639 * 24 23 22 26 26 C 1.54889 * 104.19485 * 217.10267 * 25 24 23 27 27 C 1.54888 * 102.74866 * 37.94172 * 26 25 24 28 28 C 1.53871 * 110.03413 * 300.04675 * 24 23 22 29 29 H 1.08989 * 109.47609 * 59.99422 * 1 2 3 30 30 H 1.09004 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46905 * 299.99030 * 1 2 3 32 32 H 1.08998 * 109.47171 * 55.00194 * 4 2 1 33 33 H 1.08994 * 109.47116 * 294.99801 * 4 2 1 34 34 H 1.08993 * 109.47346 * 273.85487 * 6 5 4 35 35 H 1.09003 * 109.47140 * 33.86067 * 6 5 4 36 36 H 1.09005 * 109.46729 * 153.85621 * 6 5 4 37 37 H 0.97001 * 120.00040 * 179.97438 * 10 9 7 38 38 H 0.97002 * 119.99382 * 264.99466 * 15 2 1 39 39 H 1.07999 * 126.29696 * 0.03396 * 19 18 16 40 40 H 1.09005 * 109.46547 * 270.26555 * 21 20 19 41 41 H 1.08998 * 109.46902 * 30.26515 * 21 20 19 42 42 H 1.09000 * 109.47465 * 150.27042 * 21 20 19 43 43 H 1.09002 * 110.01377 * 178.65621 * 24 23 22 44 44 H 1.09003 * 110.48397 * 335.77902 * 25 24 23 45 45 H 1.09001 * 110.48773 * 98.42131 * 25 24 23 46 46 H 1.09004 * 110.75732 * 279.62438 * 26 25 24 47 47 H 1.09002 * 110.75358 * 156.25664 * 26 25 24 48 48 H 1.09002 * 110.48588 * 203.37851 * 27 26 25 49 49 H 1.08997 * 110.60068 * 80.79112 * 27 26 25 50 50 H 1.09010 * 110.03094 * 238.56958 * 28 24 23 51 51 H 1.08996 * 110.03410 * 359.95005 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5002 -0.8263 1.1904 6 6 4.1260 -1.9918 0.5608 7 6 4.2800 0.1648 1.7238 8 1 3.8803 1.1611 1.8433 9 6 5.5860 -0.1094 2.1059 10 7 6.4711 0.8627 2.1690 11 14 6.0874 -1.8581 2.5302 12 1 6.4475 -2.5854 1.2865 13 1 7.2580 -1.8296 3.4434 14 1 4.9555 -2.5494 3.1979 15 7 2.0184 -0.6904 -1.1963 16 6 2.1470 -0.0179 -2.3572 17 8 1.8572 1.1618 -2.4118 18 6 2.6379 -0.7129 -3.5612 19 6 3.0077 -2.0400 -3.6478 20 7 3.3895 -2.2690 -4.9144 21 6 3.8578 -3.5501 -5.4490 22 7 3.2703 -1.0762 -5.6364 23 6 2.8238 -0.1437 -4.8409 24 6 2.5543 1.2896 -5.2204 25 6 1.5454 1.3469 -6.3860 26 6 2.0385 2.5288 -7.2573 27 6 3.5793 2.3909 -7.1800 28 6 3.8474 1.9534 -5.7252 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6056 -1.7199 1.2950 33 1 1.7518 -0.1585 2.1369 34 1 4.2200 -2.7936 1.2931 35 1 3.5088 -2.3304 -0.2714 36 1 5.1147 -1.7186 0.1923 37 1 7.3837 0.6711 2.4363 38 1 2.2491 -1.6316 -1.1528 39 1 2.9903 -2.7622 -2.8449 40 1 4.9393 -3.6193 -5.3314 41 1 3.3803 -4.3663 -4.9070 42 1 3.6024 -3.6177 -6.5065 43 1 2.1649 1.8360 -4.3613 44 1 1.5674 0.4178 -6.9556 45 1 0.5405 1.5422 -6.0116 46 1 1.7142 3.4806 -6.8365 47 1 1.6921 2.4216 -8.2853 48 1 4.0587 3.3481 -7.3850 49 1 3.9319 1.6315 -7.8778 50 1 4.0851 2.8225 -5.1116 51 1 4.6702 1.2391 -5.6949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:20 Heat of formation + Delta-G solvation = 56.032973 kcal Electronic energy + Delta-G solvation = -30214.599334 eV Core-core repulsion = 26344.127128 eV Total energy + Delta-G solvation = -3870.472205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.45601 -38.96822 -37.91525 -36.52731 -34.15466 -33.43029 -31.74042 -31.13940 -29.64304 -29.14273 -28.61115 -26.78540 -26.35381 -25.69230 -23.05161 -21.78092 -21.49359 -20.59353 -20.35180 -19.80063 -18.82654 -17.57063 -16.86098 -16.09273 -15.75462 -15.54567 -15.38407 -15.20363 -15.10560 -14.49570 -14.18333 -13.93439 -13.51908 -13.34328 -13.29652 -13.07443 -12.89543 -12.82636 -12.81489 -12.45668 -12.15951 -12.06912 -11.62841 -11.41808 -11.31467 -11.26064 -11.06427 -11.01470 -10.77456 -10.71770 -10.60090 -10.50380 -10.43506 -10.22569 -10.09496 -9.52420 -9.30203 -9.25433 -8.77414 -8.59755 -8.35621 -7.03233 -5.94483 -3.27923 1.56158 2.28603 2.30185 3.30239 3.46826 3.49178 3.68617 3.86614 4.25713 4.52871 4.53450 4.66505 4.74785 4.76729 4.88900 4.91137 5.07188 5.14358 5.24702 5.36327 5.42884 5.52983 5.53645 5.60699 5.62951 5.70487 5.73202 5.76588 5.82982 5.87118 5.93711 5.97527 6.00908 6.01770 6.10492 6.16154 6.29668 6.31303 6.37613 6.43465 6.50476 6.51897 6.59754 6.63987 6.76894 6.79965 7.10719 7.62009 7.91879 8.05228 8.32356 8.78406 8.93279 9.72682 10.02402 11.21486 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.003535 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.689335 B = 7919.045905 C = 8215.172087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 H 0.090 0.910 4 C 0.143 3.857 5 N -0.605 5.605 6 C 0.109 3.891 7 C -0.262 4.262 8 H 0.087 0.913 9 C 0.025 3.975 10 N -0.903 5.903 11 Si 0.886 3.114 12 H -0.289 1.289 13 H -0.306 1.306 14 H -0.279 1.279 15 N -0.706 5.706 16 C 0.594 3.406 17 O -0.546 6.546 18 C -0.277 4.277 19 C 0.095 3.905 20 N -0.365 5.365 21 C 0.099 3.901 22 N -0.299 5.299 23 C 0.144 3.856 24 C -0.026 4.026 25 C -0.112 4.112 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.113 4.113 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.008 0.992 35 H 0.023 0.977 36 H 0.060 0.940 37 H 0.262 0.738 38 H 0.389 0.611 39 H 0.179 0.821 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 -7.758 -16.901 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 H 0.108 0.892 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.037 4.037 7 C -0.391 4.391 8 H 0.105 0.895 9 C -0.174 4.174 10 N -0.545 5.545 11 Si 0.717 3.283 12 H -0.217 1.217 13 H -0.234 1.234 14 H -0.205 1.205 15 N -0.356 5.356 16 C 0.381 3.619 17 O -0.425 6.425 18 C -0.292 4.292 19 C -0.056 4.056 20 N -0.144 5.144 21 C -0.042 4.042 22 N -0.120 5.120 23 C -0.024 4.024 24 C -0.047 4.047 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.159 4.159 28 C -0.151 4.151 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.196 0.804 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.589 -7.322 -18.107 21.758 hybrid contribution 0.520 -1.652 1.255 2.139 sum -9.069 -8.974 -16.852 21.137 Atomic orbital electron populations 1.22127 0.96397 1.01180 1.02017 1.21810 0.92194 0.99243 0.85409 0.89170 1.21118 0.84468 0.97803 0.95037 1.44054 1.00553 1.22227 1.65997 1.21419 0.98113 0.89739 0.94399 1.18887 0.94108 0.89942 1.36114 0.89534 1.25157 0.95936 0.96692 0.99631 1.69896 1.02921 1.32012 1.49720 0.87033 0.76908 0.86611 0.77757 1.21669 1.23403 1.20481 1.45870 1.67030 1.13351 1.09393 1.17168 0.76859 0.85983 0.81874 1.90661 1.51709 1.15351 1.84762 1.20396 1.18648 0.93695 0.96500 1.23039 0.96865 0.97321 0.88418 1.48253 1.49605 1.09446 1.07059 1.21938 1.00773 0.80021 1.01487 1.77107 1.25030 0.90334 1.19530 1.22315 0.94365 0.95806 0.89905 1.20649 0.96207 0.87464 1.00350 1.22407 0.98213 0.98780 0.95611 1.22483 0.95659 0.98533 0.99375 1.22336 0.95987 1.00775 0.96770 1.22157 0.96760 1.00307 0.95872 0.92614 0.93226 0.91888 0.93997 0.90994 0.97476 0.95914 0.92115 0.92824 0.77542 0.80403 0.90354 0.89244 0.89081 0.86115 0.91440 0.91554 0.91324 0.91815 0.91859 0.91790 0.91181 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 2 C 0.12 2.06 2.88 -67.93 -0.20 1.86 16 3 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 4 C 0.14 2.58 5.32 -4.04 -0.02 2.56 16 5 N -0.61 -13.65 2.59 -181.12 -0.47 -14.12 16 6 C 0.11 2.21 8.00 59.85 0.48 2.69 16 7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.02 0.71 5.17 -17.43 -0.09 0.62 16 10 N -0.90 -27.82 13.97 55.49 0.78 -27.05 16 11 Si 0.89 22.15 24.04 -169.99 -4.09 18.06 16 12 H -0.29 -6.88 6.37 56.52 0.36 -6.52 16 13 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 14 H -0.28 -6.85 6.90 56.52 0.39 -6.46 16 15 N -0.71 -11.47 4.50 -54.88 -0.25 -11.71 16 16 C 0.59 10.62 7.78 -12.52 -0.10 10.52 16 17 O -0.55 -11.31 14.24 5.28 0.08 -11.24 16 18 C -0.28 -4.37 6.13 -105.07 -0.64 -5.01 16 19 C 0.09 1.17 10.99 -16.56 -0.18 0.99 16 20 N -0.37 -4.33 3.98 -67.59 -0.27 -4.60 16 21 C 0.10 0.68 11.44 59.85 0.68 1.36 16 22 N -0.30 -4.34 12.25 33.90 0.42 -3.92 16 23 C 0.14 2.23 5.50 -82.02 -0.45 1.78 16 24 C -0.03 -0.39 3.29 -90.66 -0.30 -0.68 16 25 C -0.11 -1.36 6.35 -25.07 -0.16 -1.52 16 26 C -0.12 -1.28 6.91 -24.74 -0.17 -1.45 16 27 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 28 C -0.11 -1.52 6.45 -25.61 -0.17 -1.69 16 29 H 0.05 0.83 8.14 -51.94 -0.42 0.40 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 34 H 0.01 0.15 5.74 -51.93 -0.30 -0.14 16 35 H 0.02 0.36 5.55 -51.93 -0.29 0.07 16 36 H 0.06 1.38 5.80 -51.93 -0.30 1.08 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.39 5.47 5.03 -40.82 -0.21 5.27 16 39 H 0.18 1.58 7.46 -52.49 -0.39 1.18 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.12 2.03 5.65 -51.93 -0.29 1.73 16 44 H 0.07 0.84 7.65 -51.93 -0.40 0.45 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 51 H 0.06 0.93 7.66 -51.93 -0.40 0.54 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -34.97 396.79 -7.59 -42.57 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.49 Total: 4.72 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.28 Total: 1.31 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.21 Total: -61.40 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.09 Total: 18.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.97 -7.59 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.601 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds