Wall clock time and date at job start Sat Apr 11 2020 04:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47102 * 2 1 4 4 N 1.39941 * 125.75229 * 270.02746 * 3 2 1 5 5 C 1.30452 * 108.89519 * 179.73417 * 4 3 2 6 6 C 1.41288 * 108.02017 * 0.37910 * 5 4 3 7 7 C 1.47427 * 126.41162 * 179.87960 * 6 5 4 8 8 O 1.21610 * 120.00415 * 179.69117 * 7 6 5 9 9 N 1.34778 * 120.00029 * 359.68780 * 7 6 5 10 10 C 1.46504 * 120.00018 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.44877 * 34.96626 * 10 9 7 12 12 C 1.53045 * 109.45883 * 275.00421 * 10 9 7 13 13 C 1.53189 * 109.31183 * 178.61566 * 12 10 9 14 14 N 1.46933 * 108.77712 * 54.63310 * 13 12 10 15 15 C 1.36936 * 120.62939 * 126.36691 * 14 13 12 16 16 H 1.07995 * 120.00289 * 332.50485 * 15 14 13 17 17 C 1.38817 * 119.99502 * 152.50384 * 15 14 13 18 18 N 1.31612 * 120.00107 * 335.02596 * 17 15 14 19 19 Si 1.86801 * 119.99419 * 155.02751 * 17 15 14 20 20 H 1.48497 * 109.47275 * 90.00269 * 19 17 15 21 21 H 1.48500 * 109.47036 * 210.00004 * 19 17 15 22 22 H 1.48494 * 109.47235 * 329.99781 * 19 17 15 23 23 C 1.46930 * 118.73578 * 306.64412 * 14 13 12 24 24 C 1.52757 * 109.00623 * 53.30912 * 23 14 13 25 25 C 1.53002 * 109.56342 * 185.54745 * 24 23 14 26 26 C 1.53001 * 109.36264 * 65.49898 * 24 23 14 27 27 C 1.34254 * 125.75618 * 90.00119 * 3 2 1 28 28 C 1.50695 * 126.29151 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.46703 * 299.99701 * 1 2 3 30 30 H 1.09001 * 109.47188 * 59.99858 * 1 2 3 31 31 H 1.08999 * 109.47030 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46653 * 239.99753 * 2 1 3 33 33 H 1.09001 * 109.47188 * 120.00142 * 2 1 3 34 34 H 1.07998 * 125.98629 * 180.26394 * 5 4 3 35 35 H 0.96999 * 119.99946 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.49993 * 58.66025 * 12 10 9 37 37 H 1.09001 * 109.52374 * 298.58317 * 12 10 9 38 38 H 1.09000 * 109.58791 * 294.84911 * 13 12 10 39 39 H 1.09000 * 109.59024 * 174.41909 * 13 12 10 40 40 H 0.96997 * 120.00247 * 354.26122 * 18 17 15 41 41 H 1.09001 * 109.58180 * 173.14154 * 23 14 13 42 42 H 1.08991 * 109.58526 * 293.56754 * 23 14 13 43 43 H 1.08999 * 109.47539 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.47556 * 299.96818 * 25 24 23 45 45 H 1.09007 * 109.46919 * 59.96544 * 25 24 23 46 46 H 1.09002 * 109.47061 * 300.15618 * 26 24 23 47 47 H 1.09006 * 109.47136 * 60.15349 * 26 24 23 48 48 H 1.08998 * 109.47171 * 180.15460 * 26 24 23 49 49 H 1.09004 * 109.47544 * 269.99914 * 28 27 3 50 50 H 1.09000 * 109.47224 * 29.99865 * 28 27 3 51 51 H 1.08999 * 109.47386 * 149.99491 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2904 2.1523 -1.1357 5 6 2.7013 3.3312 -0.7574 6 6 2.7162 3.3564 0.6552 7 6 3.1167 4.4918 1.5060 8 8 3.0793 4.3871 2.7170 9 7 3.5244 5.6458 0.9417 10 6 3.9219 6.7743 1.7872 11 1 4.4135 6.3997 2.6849 12 6 2.6803 7.5769 2.1831 13 6 3.0956 8.7356 3.0951 14 7 4.1326 9.5241 2.4155 15 6 3.9866 10.8759 2.2528 16 1 2.9991 11.3097 2.1980 17 6 5.1080 11.6887 2.1585 18 7 6.2472 11.3028 2.6927 19 14 4.9999 13.3301 1.2733 20 1 4.6193 14.3902 2.2410 21 1 6.3187 13.6571 0.6741 22 1 3.9758 13.2478 0.2011 23 6 5.3262 8.8336 1.9083 24 6 4.8884 7.6747 1.0145 25 6 6.1142 6.8631 0.5907 26 6 4.1878 8.2288 -0.2277 27 6 2.2799 2.1208 1.0895 28 6 2.1256 1.6827 2.5231 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.9827 4.1446 -1.4097 35 1 3.5539 5.7295 -0.0242 36 1 1.9820 6.9291 2.7129 37 1 2.2014 7.9725 1.2874 38 1 3.4915 8.3404 4.0306 39 1 2.2314 9.3675 3.2996 40 1 6.2840 10.4916 3.2232 41 1 5.9331 9.5302 1.3300 42 1 5.9076 8.4467 2.7450 43 1 5.8002 6.0365 -0.0465 44 1 6.8024 7.5048 0.0404 45 1 6.6136 6.4700 1.4763 46 1 3.3155 8.8080 0.0751 47 1 4.8766 8.8701 -0.7777 48 1 3.8722 7.4032 -0.8655 49 1 1.1194 1.9193 2.8691 50 1 2.2909 0.6077 2.5943 51 1 2.8549 2.2042 3.1429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941123647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:23 Heat of formation + Delta-G solvation = 46.905462 kcal Electronic energy + Delta-G solvation = -30237.026424 eV Core-core repulsion = 26366.158420 eV Total energy + Delta-G solvation = -3870.868004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 11.98 seconds Orbital eigenvalues (eV) -41.66858 -39.75749 -37.93309 -35.01672 -34.69814 -32.87542 -32.31959 -32.08038 -30.12142 -29.04655 -27.48446 -26.80023 -26.06225 -24.99500 -24.09996 -22.79976 -21.79348 -20.70227 -20.16875 -19.75018 -18.23771 -17.54051 -17.20753 -16.16816 -15.71420 -15.57168 -15.11927 -14.54776 -14.52857 -14.22069 -14.06041 -13.68793 -13.61805 -13.55654 -13.36047 -13.27677 -13.16644 -12.81262 -12.65454 -12.52324 -12.36171 -12.29772 -11.84716 -11.79365 -11.48610 -11.42561 -11.01829 -10.88183 -10.86822 -10.65578 -10.36088 -10.25847 -10.03399 -9.99118 -9.74159 -9.66207 -9.58437 -9.20598 -8.85493 -8.50690 -8.31537 -6.83197 -6.02986 -3.18096 1.37931 2.04999 2.07213 3.50932 3.52650 3.55886 3.59527 3.70666 4.10479 4.32491 4.47315 4.58042 4.62250 4.67111 4.82395 5.04426 5.07262 5.15141 5.20325 5.23245 5.32389 5.38426 5.42047 5.49808 5.54801 5.58403 5.69407 5.84791 5.88006 5.91157 6.04119 6.06786 6.19660 6.23120 6.28116 6.37994 6.44590 6.47585 6.62955 6.63745 6.65486 6.78703 6.86837 6.91291 6.99224 7.14702 7.20919 7.35336 7.84873 8.05075 8.54052 8.61715 9.15962 9.88978 10.34069 11.25793 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.002606 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.262456 B =10739.988746 C =10975.281914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.362 5.362 4 N -0.300 5.300 5 C 0.082 3.918 6 C -0.294 4.294 7 C 0.592 3.408 8 O -0.552 6.552 9 N -0.716 5.716 10 C 0.167 3.833 11 H 0.080 0.920 12 C -0.142 4.142 13 C 0.150 3.850 14 N -0.596 5.596 15 C -0.345 4.345 16 H 0.055 0.945 17 C -0.024 4.024 18 N -0.917 5.917 19 Si 1.063 2.937 20 H -0.295 1.295 21 H -0.287 1.287 22 H -0.293 1.293 23 C 0.165 3.835 24 C -0.091 4.091 25 C -0.136 4.136 26 C -0.128 4.128 27 C 0.155 3.845 28 C -0.099 4.099 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.187 0.813 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.056 0.944 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.032 0.968 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 -22.563 -6.520 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.143 5.143 4 N -0.118 5.118 5 C -0.105 4.105 6 C -0.308 4.308 7 C 0.379 3.621 8 O -0.431 6.431 9 N -0.366 5.366 10 C 0.064 3.936 11 H 0.098 0.902 12 C -0.183 4.183 13 C 0.023 3.977 14 N -0.319 5.319 15 C -0.474 4.474 16 H 0.073 0.927 17 C -0.226 4.226 18 N -0.557 5.557 19 Si 0.893 3.107 20 H -0.223 1.223 21 H -0.212 1.212 22 H -0.219 1.219 23 C 0.039 3.961 24 C -0.093 4.093 25 C -0.194 4.194 26 C -0.185 4.185 27 C 0.023 3.977 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.229 0.771 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.104 0.896 50 H 0.086 0.914 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.835 -22.177 -7.180 24.592 hybrid contribution -0.803 -0.792 0.575 1.266 sum -8.638 -22.968 -6.605 25.413 Atomic orbital electron populations 1.22189 0.93919 1.03278 1.03500 1.21762 0.95529 0.77654 1.04718 1.48550 1.50091 1.12233 1.03395 1.77157 1.22748 1.04415 1.07526 1.24010 0.97026 0.95505 0.93984 1.20118 1.20617 0.96579 0.93501 1.17186 0.76493 0.81472 0.86924 1.90718 1.55404 1.82908 1.14101 1.46055 1.67281 1.13048 1.10245 1.20921 0.95095 0.84378 0.93237 0.90154 1.22435 0.97011 0.97928 1.00880 1.20867 0.92710 0.91454 0.92680 1.44105 1.19570 1.04097 1.64163 1.19945 0.94416 0.82506 1.50517 0.92722 1.25773 0.93608 1.03024 1.00184 1.70743 1.28092 1.25769 1.31121 0.83577 0.75373 0.75463 0.76326 1.22261 1.21247 1.21935 1.20904 0.89683 0.91452 0.94101 1.21343 0.94402 0.96503 0.97097 1.21787 0.97610 0.99133 1.00829 1.21757 1.01675 0.99311 0.95771 1.21512 0.94367 0.90749 0.91062 1.20685 1.05126 1.01310 0.88546 0.91817 0.91454 0.90256 0.88370 0.88649 0.79570 0.77144 0.92649 0.91817 0.96457 0.92543 0.91969 0.89731 0.96528 0.93466 0.92550 0.93065 0.90987 0.92838 0.94942 0.89617 0.91379 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.12 0.76 6.93 -4.04 -0.03 0.73 16 3 N -0.36 -3.70 3.58 -56.61 -0.20 -3.91 16 4 N -0.30 -3.58 12.50 30.86 0.39 -3.20 16 5 C 0.08 0.95 11.50 -16.98 -0.20 0.75 16 6 C -0.29 -3.82 6.13 -105.07 -0.64 -4.47 16 7 C 0.59 9.05 7.78 -12.52 -0.10 8.96 16 8 O -0.55 -9.99 14.50 5.27 0.08 -9.91 16 9 N -0.72 -10.36 4.28 -54.84 -0.23 -10.60 16 10 C 0.17 2.89 1.57 -67.89 -0.11 2.78 16 11 H 0.08 1.57 7.57 -51.93 -0.39 1.18 16 12 C -0.14 -2.61 5.31 -26.61 -0.14 -2.75 16 13 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 14 N -0.60 -14.52 2.30 -172.58 -0.40 -14.92 16 15 C -0.34 -9.39 9.49 -15.06 -0.14 -9.54 16 16 H 0.05 1.51 7.94 -52.49 -0.42 1.09 16 17 C -0.02 -0.67 4.68 -17.43 -0.08 -0.75 16 18 N -0.92 -27.10 12.41 55.49 0.69 -26.41 16 19 Si 1.06 25.03 29.99 -169.99 -5.10 19.93 16 20 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.17 3.74 3.33 -3.93 -0.01 3.72 16 24 C -0.09 -1.61 0.56 -154.61 -0.09 -1.70 16 25 C -0.14 -2.10 8.31 37.16 0.31 -1.79 16 26 C -0.13 -2.16 7.82 37.16 0.29 -1.87 16 27 C 0.16 1.77 7.01 -81.61 -0.57 1.20 16 28 C -0.10 -0.90 9.57 36.00 0.34 -0.56 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.38 7.02 -51.93 -0.36 0.01 16 34 H 0.19 1.61 7.50 -52.49 -0.39 1.22 16 35 H 0.39 4.84 5.62 -40.82 -0.23 4.61 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.17 6.34 -51.93 -0.33 0.84 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.27 8.05 6.71 -40.82 -0.27 7.78 16 41 H 0.08 2.15 6.30 -51.93 -0.33 1.82 16 42 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 43 H 0.05 0.63 7.36 -51.93 -0.38 0.25 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.38 5.97 -51.93 -0.31 1.07 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.03 0.44 6.58 -51.93 -0.34 0.09 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.07 0.42 7.05 -51.93 -0.37 0.06 16 51 H 0.11 1.23 6.50 -51.93 -0.34 0.89 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -32.96 393.30 -7.97 -40.93 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.31 Total: 4.76 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.81 Total: -2.61 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.24 Total: -59.03 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.96 -7.97 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941123647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.836 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.98 seconds