Wall clock time and date at job start Sat Apr 11 2020 04:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46866 * 2 1 4 4 C 1.36940 * 120.00137 * 264.56555 * 3 2 1 5 5 H 1.08002 * 119.99490 * 145.79012 * 4 3 2 6 6 C 1.38815 * 120.00161 * 325.79333 * 4 3 2 7 7 N 1.31614 * 119.99842 * 152.40228 * 6 4 3 8 8 Si 1.86801 * 119.99884 * 332.40481 * 6 4 3 9 9 H 1.48506 * 109.47016 * 95.22370 * 8 6 4 10 10 H 1.48500 * 109.46993 * 215.22166 * 8 6 4 11 11 H 1.48501 * 109.47129 * 335.22383 * 8 6 4 12 12 C 1.46504 * 120.00067 * 84.57548 * 3 2 1 13 13 C 1.52994 * 109.47314 * 89.99396 * 12 3 2 14 14 C 1.52998 * 109.47210 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.47400 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00303 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99900 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00091 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.71619 * 28.09164 * 18 16 15 20 20 C 1.50884 * 109.72009 * 267.43385 * 18 16 15 21 21 C 1.34570 * 128.32484 * 77.00634 * 20 18 16 22 22 N 1.35195 * 107.61795 * 179.86308 * 21 20 18 23 23 H 0.96997 * 126.00542 * 180.02562 * 22 21 20 24 24 N 1.40313 * 107.99164 * 0.03435 * 22 21 20 25 25 C 1.30130 * 108.12377 * 0.03889 * 24 22 21 26 26 C 1.50951 * 128.28604 * 179.87462 * 25 24 22 27 27 C 1.53373 * 108.20132 * 196.73857 * 26 25 24 28 28 C 1.53022 * 109.75275 * 309.33444 * 27 26 25 29 29 H 1.08998 * 109.38938 * 311.65592 * 28 27 26 30 30 C 1.53006 * 109.42606 * 191.78159 * 28 27 26 31 31 H 1.08998 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47177 * 60.00303 * 1 2 3 33 33 H 1.08997 * 109.47283 * 300.00186 * 1 2 3 34 34 H 1.08998 * 109.46814 * 120.00010 * 2 1 3 35 35 H 1.09005 * 109.46807 * 240.00239 * 2 1 3 36 36 H 0.97000 * 120.00083 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.46821 * 209.99486 * 12 3 2 38 38 H 1.08996 * 109.46436 * 329.99343 * 12 3 2 39 39 H 1.08996 * 109.47256 * 300.00264 * 13 12 3 40 40 H 1.09008 * 109.47354 * 60.00140 * 13 12 3 41 41 H 1.08996 * 109.47319 * 300.00338 * 14 13 12 42 42 H 1.09005 * 109.47193 * 60.00111 * 14 13 12 43 43 H 0.96997 * 119.99998 * 359.97438 * 15 14 13 44 44 H 1.07996 * 126.19351 * 359.85909 * 21 20 18 45 45 H 1.08994 * 109.71376 * 77.05888 * 26 25 24 46 46 H 1.08999 * 109.71703 * 316.41395 * 26 25 24 47 47 H 1.09001 * 109.41940 * 189.24810 * 27 26 25 48 48 H 1.09001 * 109.42383 * 69.42660 * 27 26 25 49 49 H 1.08999 * 109.47299 * 301.07075 * 30 28 27 50 50 H 1.08999 * 109.46642 * 61.07501 * 30 28 27 51 51 H 1.09001 * 109.47156 * 181.06766 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3524 1.9893 -1.1806 5 1 2.1793 3.0474 -1.3108 6 6 2.9135 1.2459 -2.2099 7 7 2.7460 1.6217 -3.4601 8 14 3.9062 -0.2879 -1.8205 9 1 3.0297 -1.4827 -1.9179 10 1 5.0239 -0.4135 -2.7902 11 1 4.4540 -0.1867 -0.4440 12 6 2.1493 2.1118 1.2631 13 6 3.5488 1.8875 1.8392 14 6 3.6858 2.6510 3.1580 15 7 5.0256 2.4357 3.7100 16 6 5.3753 3.0147 4.8757 17 8 4.5809 3.7144 5.4675 18 6 6.7537 2.7937 5.4433 19 1 7.4580 2.6009 4.6340 20 6 6.7319 1.6197 6.3909 21 6 6.7075 0.3075 6.0934 22 7 6.6979 -0.3763 7.2596 23 1 6.6810 -1.3414 7.3546 24 7 6.7164 0.5555 8.3086 25 6 6.7354 1.7487 7.7897 26 6 6.7573 3.0787 8.5035 27 6 6.3547 4.1672 7.5007 28 6 7.1951 4.0350 6.2288 29 1 8.2468 3.9384 6.4984 30 6 7.0044 5.2807 5.3612 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 3.1384 1.1024 -4.1793 37 1 1.9962 3.1762 1.0847 38 1 1.4029 1.7509 1.9706 39 1 3.7020 0.8231 2.0176 40 1 4.2953 2.2484 1.1316 41 1 3.5328 3.7153 2.9792 42 1 2.9394 2.2905 3.8658 43 1 5.6609 1.8758 3.2369 44 1 6.6973 -0.1217 5.1025 45 1 7.7608 3.2778 8.8793 46 1 6.0499 3.0627 9.3326 47 1 6.5211 5.1486 7.9449 48 1 5.2993 4.0575 7.2510 49 1 5.9496 5.3900 5.1092 50 1 7.3400 6.1606 5.9101 51 1 7.5880 5.1790 4.4461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265123552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:42 Heat of formation + Delta-G solvation = 43.184195 kcal Electronic energy + Delta-G solvation = -29432.085095 eV Core-core repulsion = 25561.055725 eV Total energy + Delta-G solvation = -3871.029370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91362 -39.84623 -37.11366 -36.46083 -34.87258 -32.94617 -32.11808 -31.59472 -31.01283 -29.85316 -28.96337 -26.98749 -25.40637 -24.08141 -23.26433 -22.28943 -21.48205 -21.01545 -20.56150 -19.88228 -19.03424 -18.08972 -16.76620 -16.63245 -15.83534 -15.59219 -15.34917 -15.20438 -14.99390 -14.56843 -14.43535 -14.08089 -13.88695 -13.42083 -13.33663 -13.17048 -13.03029 -12.87116 -12.72806 -12.38402 -12.08660 -11.87174 -11.74840 -11.64168 -11.38655 -11.33226 -11.22949 -11.14934 -10.99715 -10.85298 -10.75504 -10.43612 -10.42188 -10.01925 -9.78737 -9.73213 -9.55565 -9.48216 -8.93136 -8.64974 -8.52804 -6.93581 -6.05310 -3.38442 1.61104 2.34662 2.55295 2.80887 3.26643 3.34347 3.41647 3.45154 4.14893 4.46348 4.48543 4.60313 4.64837 4.84089 4.89728 5.00390 5.05174 5.20070 5.22912 5.28878 5.34898 5.41930 5.45418 5.59509 5.63083 5.67623 5.72068 5.78067 5.79510 5.91879 5.97992 5.99415 6.02721 6.07784 6.21401 6.23623 6.29928 6.33621 6.37463 6.45425 6.49764 6.66112 6.70314 6.79318 6.87978 6.99569 7.06728 7.40993 7.58546 8.00062 8.31146 8.33551 8.95575 9.68708 10.09276 11.10694 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.002641 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.552661 B =10599.703739 C =11062.453935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.604 5.604 4 C -0.268 4.268 5 H 0.079 0.921 6 C 0.036 3.964 7 N -0.894 5.894 8 Si 0.869 3.131 9 H -0.287 1.287 10 H -0.302 1.302 11 H -0.270 1.270 12 C 0.155 3.845 13 C -0.153 4.153 14 C 0.121 3.879 15 N -0.727 5.727 16 C 0.524 3.476 17 O -0.534 6.534 18 C -0.023 4.023 19 H 0.093 0.907 20 C -0.229 4.229 21 C 0.072 3.928 22 N -0.483 5.483 23 H 0.440 0.560 24 N -0.292 5.292 25 C 0.097 3.903 26 C -0.040 4.040 27 C -0.129 4.129 28 C -0.066 4.066 29 H 0.075 0.925 30 C -0.158 4.158 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.398 0.602 44 H 0.177 0.823 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.057 0.943 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -0.372 21.036 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.326 5.326 4 C -0.396 4.396 5 H 0.097 0.903 6 C -0.165 4.165 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.215 1.215 10 H -0.230 1.230 11 H -0.195 1.195 12 C 0.028 3.972 13 C -0.193 4.193 14 C -0.003 4.003 15 N -0.378 5.378 16 C 0.310 3.690 17 O -0.412 6.412 18 C -0.046 4.046 19 H 0.111 0.889 20 C -0.241 4.241 21 C -0.075 4.075 22 N -0.191 5.191 23 H 0.284 0.716 24 N -0.114 5.114 25 C -0.072 4.072 26 C -0.079 4.079 27 C -0.166 4.166 28 C -0.085 4.085 29 H 0.094 0.906 30 C -0.215 4.215 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.231 0.769 44 H 0.194 0.806 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.090 0.910 50 H 0.076 0.924 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.904 -0.556 22.318 24.424 hybrid contribution 1.044 -1.596 -1.093 2.198 sum 10.948 -2.152 21.226 23.980 Atomic orbital electron populations 1.22241 0.99006 0.99376 1.01685 1.21123 0.92668 0.86633 0.99031 1.44199 1.74403 1.11374 1.02605 1.18787 1.36136 0.95714 0.88947 0.90316 1.25402 0.98382 0.97675 0.95029 1.69944 1.44173 1.40903 0.98458 0.87062 0.80960 0.83995 0.78090 1.21540 1.22997 1.19467 1.20769 0.92059 0.96892 0.87476 1.22522 1.02909 0.99386 0.94502 1.21445 0.82780 1.00839 0.95227 1.46231 1.16618 1.51443 1.23463 1.20484 0.89194 0.78985 0.80362 1.90574 1.52785 1.38535 1.59266 1.19716 0.94486 0.93748 0.96657 0.88856 1.19551 1.17667 0.92917 0.93979 1.22109 1.00627 0.92504 0.92220 1.46309 1.60371 1.09048 1.03339 0.71607 1.77034 1.25060 0.98141 1.11144 1.22395 0.97775 0.94177 0.92851 1.20195 1.02458 0.87655 0.97594 1.21962 1.03657 0.97243 0.93754 1.20941 0.99529 0.92784 0.95233 0.90624 1.21990 1.03463 0.96807 0.99233 0.94348 0.92186 0.93849 0.94989 0.92441 0.92745 0.92723 0.94060 0.92623 0.90971 0.91515 0.92083 0.76866 0.80600 0.90081 0.90028 0.91258 0.87854 0.91001 0.92417 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.23 37.16 0.38 -2.68 16 2 C 0.13 2.76 5.11 -4.04 -0.02 2.73 16 3 N -0.60 -13.63 2.12 -173.24 -0.37 -14.00 16 4 C -0.27 -7.18 9.89 -15.06 -0.15 -7.33 16 5 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.04 1.00 5.19 -17.43 -0.09 0.90 16 7 N -0.89 -26.63 13.97 55.49 0.78 -25.85 16 8 Si 0.87 21.19 25.29 -169.99 -4.30 16.89 16 9 H -0.29 -6.90 6.61 56.52 0.37 -6.52 16 10 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.16 2.86 5.69 -4.04 -0.02 2.83 16 13 C -0.15 -2.43 5.65 -26.74 -0.15 -2.59 16 14 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 15 N -0.73 -8.64 5.56 -60.30 -0.33 -8.97 16 16 C 0.52 6.52 5.91 -10.99 -0.06 6.45 16 17 O -0.53 -8.24 12.42 5.56 0.07 -8.17 16 18 C -0.02 -0.23 2.67 -92.63 -0.25 -0.48 16 19 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.23 -2.39 5.14 -104.99 -0.54 -2.93 16 21 C 0.07 0.64 11.95 -17.37 -0.21 0.43 16 22 N -0.48 -4.38 7.37 30.35 0.22 -4.16 16 23 H 0.44 2.58 8.96 -182.44 -1.64 0.94 16 24 N -0.29 -3.47 12.68 33.75 0.43 -3.04 16 25 C 0.10 1.10 7.10 -82.35 -0.58 0.52 16 26 C -0.04 -0.37 6.31 -27.57 -0.17 -0.55 16 27 C -0.13 -1.25 5.04 -26.53 -0.13 -1.38 16 28 C -0.07 -0.61 2.40 -90.40 -0.22 -0.83 16 29 H 0.08 0.62 8.10 -51.93 -0.42 0.19 16 30 C -0.16 -1.50 8.71 37.16 0.32 -1.17 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.60 8.11 -51.93 -0.42 0.18 16 35 H 0.06 1.34 3.51 -51.93 -0.18 1.16 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 38 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 44 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 48 H 0.10 1.31 5.35 -51.93 -0.28 1.03 16 49 H 0.07 0.85 6.06 -51.93 -0.31 0.54 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -33.14 397.82 -9.37 -42.51 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -9.94 Total: 3.22 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.92 Total: -4.42 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.72 Total: -56.02 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.30 Total: 16.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.14 -9.37 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265123552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.693 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds