Wall clock time and date at job start Sat Apr 11 2020 04:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 120.00274 * 2 1 4 4 H 1.08003 * 119.99955 * 201.83520 * 3 2 1 5 5 C 1.38810 * 119.99787 * 21.83859 * 3 2 1 6 6 N 1.31620 * 119.99976 * 11.17595 * 5 3 2 7 7 Si 1.86800 * 119.99756 * 191.18073 * 5 3 2 8 8 H 1.48495 * 109.47173 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47124 * 120.00095 * 7 5 3 10 10 H 1.48500 * 109.46974 * 239.99446 * 7 5 3 11 11 C 1.46501 * 119.99893 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47308 * 269.99985 * 11 2 1 13 13 H 1.09001 * 109.52572 * 304.91902 * 12 11 2 14 14 C 1.53043 * 109.49654 * 184.83599 * 12 11 2 15 15 C 1.53046 * 109.53511 * 178.68172 * 14 12 11 16 16 C 1.52762 * 109.38123 * 61.24426 * 15 14 12 17 17 N 1.46924 * 109.00730 * 305.58411 * 16 15 14 18 18 C 1.34776 * 120.63436 * 233.58575 * 17 16 15 19 19 O 1.21275 * 120.00555 * 179.72076 * 18 17 16 20 20 C 1.50705 * 119.99668 * 359.71962 * 18 17 16 21 21 C 1.52995 * 109.47055 * 180.02562 * 20 18 17 22 22 C 1.50705 * 109.47055 * 180.02562 * 21 20 18 23 23 N 1.30495 * 125.65218 * 270.17775 * 22 21 20 24 24 C 1.34125 * 109.25671 * 180.29370 * 23 22 21 25 25 C 1.34670 * 108.01977 * 359.72123 * 24 23 22 26 26 N 1.35050 * 125.64830 * 89.99947 * 22 21 20 27 27 C 1.46493 * 126.39452 * 359.97438 * 26 22 21 28 28 C 1.46927 * 118.73844 * 53.31318 * 17 16 15 29 29 H 1.08999 * 109.46489 * 275.13913 * 1 2 3 30 30 H 1.08998 * 109.46858 * 35.13592 * 1 2 3 31 31 H 1.08993 * 109.47188 * 155.13981 * 1 2 3 32 32 H 0.97004 * 119.99853 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47102 * 149.99957 * 11 2 1 34 34 H 1.09002 * 109.47257 * 30.00082 * 11 2 1 35 35 H 1.08991 * 109.46122 * 298.70410 * 14 12 11 36 36 H 1.09000 * 109.46236 * 58.66718 * 14 12 11 37 37 H 1.09003 * 109.49463 * 181.31673 * 15 14 12 38 38 H 1.08996 * 109.49706 * 301.38138 * 15 14 12 39 39 H 1.09001 * 109.50935 * 185.70289 * 16 15 14 40 40 H 1.09003 * 109.43306 * 65.42287 * 16 15 14 41 41 H 1.09001 * 109.46879 * 60.00128 * 20 18 17 42 42 H 1.09007 * 109.47066 * 300.00358 * 20 18 17 43 43 H 1.09001 * 109.47190 * 60.00297 * 21 20 18 44 44 H 1.08994 * 109.47259 * 299.99985 * 21 20 18 45 45 H 1.08002 * 125.99383 * 179.72914 * 24 23 22 46 46 H 1.07999 * 126.59006 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47143 * 269.71021 * 27 26 22 48 48 H 1.09001 * 109.47663 * 29.71388 * 27 26 22 49 49 H 1.09003 * 109.46832 * 149.71031 * 27 26 22 50 50 H 1.08994 * 109.58809 * 66.42768 * 28 17 16 51 51 H 1.09002 * 109.58511 * 186.71227 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1717 1.2194 -0.3479 5 6 1.5305 2.3449 0.4472 6 7 0.3743 2.2741 1.0723 7 14 2.3378 4.0050 0.1617 8 1 3.6227 3.8134 -0.5577 9 1 1.4369 4.8602 -0.6522 10 1 2.5958 4.6613 1.4686 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 2.9656 -0.9152 1.9816 14 6 3.3206 -2.9715 1.4435 15 6 3.6036 -3.3960 2.8864 16 6 2.2851 -3.7156 3.5886 17 7 1.3847 -2.5612 3.4645 18 6 0.8198 -2.0102 4.5570 19 8 0.0823 -1.0544 4.4418 20 6 1.1047 -2.5819 5.9220 21 6 0.3450 -1.7789 6.9799 22 6 0.6304 -2.3502 8.3449 23 7 -0.0531 -3.2938 8.9326 24 6 0.4821 -3.5432 10.1369 25 6 1.5410 -2.7272 10.2992 26 7 1.6378 -1.9727 9.1613 27 6 2.6427 -0.9437 8.8833 28 6 1.1166 -2.0151 2.1271 29 1 -0.3632 0.0921 1.0236 30 1 -0.3633 0.8404 -0.5914 31 1 -0.3633 -0.9324 -0.4320 32 1 -0.0583 3.0840 1.3851 33 1 3.1499 -1.1382 -0.5144 34 1 1.6084 -2.0282 -0.5148 35 1 2.7964 -3.7742 0.9250 36 1 4.2621 -2.7648 0.9346 37 1 4.2412 -4.2801 2.8871 38 1 4.1063 -2.5844 3.4124 39 1 2.4742 -3.9198 4.6425 40 1 1.8276 -4.5878 3.1217 41 1 2.1746 -2.5272 6.1228 42 1 0.7816 -3.6225 5.9548 43 1 -0.7249 -1.8340 6.7789 44 1 0.6677 -0.7384 6.9472 45 1 0.1263 -4.2709 10.8513 46 1 2.1890 -2.6772 11.1618 47 1 3.5039 -1.3994 8.3947 48 1 2.2139 -0.1842 8.2295 49 1 2.9580 -0.4817 9.8188 50 1 0.5619 -2.7458 1.5385 51 1 0.5327 -1.0990 2.2168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265393321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:51 Heat of formation + Delta-G solvation = 44.671916 kcal Electronic energy + Delta-G solvation = -29793.283470 eV Core-core repulsion = 25922.318612 eV Total energy + Delta-G solvation = -3870.964858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24790 -39.93956 -37.54910 -35.44709 -34.24447 -33.73646 -32.83263 -31.58770 -30.10359 -29.10074 -27.27618 -26.41873 -25.56312 -25.40808 -23.79753 -22.37120 -21.54013 -20.83363 -19.90198 -19.60723 -18.60114 -17.43916 -16.68864 -16.53217 -16.02415 -15.67510 -15.40422 -14.79958 -14.74625 -14.36990 -14.11774 -13.94338 -13.65414 -13.51505 -13.33101 -13.18162 -13.10711 -12.96599 -12.70299 -12.57931 -12.33214 -12.14101 -12.05190 -11.59446 -11.20937 -11.01810 -10.97783 -10.83729 -10.67131 -10.59925 -10.40824 -10.10592 -10.05369 -9.97274 -9.82443 -9.78382 -9.61222 -9.42802 -8.52908 -8.46807 -8.25965 -6.66258 -5.62015 -3.08066 1.84792 2.58716 2.93232 2.97514 3.31503 3.41658 3.48332 3.50487 4.24548 4.47225 4.56212 4.59111 4.78302 4.79983 4.84358 4.95305 5.02160 5.05668 5.13687 5.16778 5.24241 5.39515 5.43974 5.45659 5.50229 5.57105 5.66911 5.78811 5.80416 5.87603 5.99157 5.99724 6.12592 6.18257 6.21156 6.24391 6.35701 6.48976 6.59542 6.68362 6.81265 6.88611 6.95792 6.98615 7.12486 7.48297 7.73775 7.84551 7.93063 7.97288 8.48723 8.51821 9.32839 9.96460 10.45046 11.42231 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.003032 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.820630 B = 9233.648685 C =10366.572148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.901 5.901 7 Si 0.901 3.099 8 H -0.280 1.280 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.159 3.841 12 C -0.121 4.121 13 H 0.074 0.926 14 C -0.115 4.115 15 C -0.133 4.133 16 C 0.108 3.892 17 N -0.611 5.611 18 C 0.509 3.491 19 O -0.524 6.524 20 C -0.130 4.130 21 C -0.021 4.021 22 C 0.213 3.787 23 N -0.490 5.490 24 C -0.029 4.029 25 C -0.064 4.064 26 N -0.458 5.458 27 C 0.067 3.933 28 C 0.120 3.880 29 H 0.035 0.965 30 H 0.042 0.958 31 H -0.006 1.006 32 H 0.251 0.749 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.169 0.831 46 H 0.173 0.827 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.052 0.948 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -14.035 14.294 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.324 5.324 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.545 5.545 7 Si 0.731 3.269 8 H -0.205 1.205 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.031 3.969 12 C -0.143 4.143 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.344 5.344 18 C 0.296 3.704 19 O -0.400 6.400 20 C -0.171 4.171 21 C -0.060 4.060 22 C -0.049 4.049 23 N -0.208 5.208 24 C -0.178 4.178 25 C -0.197 4.197 26 N -0.141 5.141 27 C -0.076 4.076 28 C -0.001 4.001 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.186 0.814 46 H 0.190 0.810 47 H 0.097 0.903 48 H 0.110 0.890 49 H 0.104 0.896 50 H 0.070 0.930 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.696 -13.643 13.922 20.308 hybrid contribution 1.391 1.250 0.559 1.952 sum 7.087 -12.393 14.481 20.335 Atomic orbital electron populations 1.20884 0.82541 0.95203 0.99655 1.43958 1.01868 1.00621 1.85981 1.19183 0.97541 0.85359 1.36331 0.91559 1.25016 0.97647 0.98291 0.98653 1.70084 1.17185 1.26691 1.40589 0.86246 0.78606 0.84747 0.77293 1.20496 1.21718 1.21892 1.20819 0.95852 0.88208 0.91999 1.22264 0.94970 0.96094 1.00950 0.90756 1.21578 1.00153 0.98328 0.95227 1.21832 0.96513 1.01360 0.97472 1.21600 0.90551 0.88555 1.00843 1.48191 1.46755 1.31882 1.07607 1.20433 0.80648 0.83513 0.85797 1.90799 1.36376 1.26554 1.86271 1.21604 1.01674 1.01637 0.92198 1.19752 1.03337 0.98625 0.84281 1.23331 0.88503 0.97109 0.95974 1.70276 1.28161 1.14812 1.07556 1.22304 0.96491 1.03014 0.95973 1.22680 1.04571 0.99713 0.92740 1.45348 1.24063 1.29984 1.14680 1.22116 0.91205 0.90622 1.03613 1.21833 0.97862 1.00288 0.80094 0.94670 0.93913 0.98764 0.93856 0.93625 0.94531 0.92370 0.92034 0.91370 0.91765 0.90499 0.91631 0.89572 0.88488 0.87731 0.89427 0.81420 0.81024 0.90302 0.88960 0.89559 0.93004 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 7.91 59.85 0.47 4.54 16 2 N -0.60 -15.08 2.77 -181.12 -0.50 -15.58 16 3 C -0.25 -7.02 9.68 -15.06 -0.15 -7.17 16 4 H 0.07 1.80 7.84 -52.48 -0.41 1.38 16 5 C 0.00 0.07 5.14 -17.43 -0.09 -0.02 16 6 N -0.90 -26.90 10.54 55.49 0.58 -26.31 16 7 Si 0.90 22.24 29.57 -169.99 -5.03 17.21 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 C 0.16 3.19 5.18 -4.04 -0.02 3.17 16 12 C -0.12 -2.16 2.55 -90.50 -0.23 -2.39 16 13 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 14 C -0.11 -1.52 5.17 -26.69 -0.14 -1.66 16 15 C -0.13 -1.48 6.06 -26.83 -0.16 -1.65 16 16 C 0.11 1.21 6.31 -3.93 -0.02 1.19 16 17 N -0.61 -9.51 2.98 -173.03 -0.52 -10.02 16 18 C 0.51 8.41 7.70 -10.98 -0.08 8.33 16 19 O -0.52 -11.27 15.39 5.56 0.09 -11.18 16 20 C -0.13 -1.56 4.03 -27.88 -0.11 -1.67 16 21 C -0.02 -0.26 4.81 -27.88 -0.13 -0.39 16 22 C 0.21 2.66 7.16 -155.41 -1.11 1.54 16 23 N -0.49 -6.80 11.25 -10.81 -0.12 -6.92 16 24 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 25 C -0.06 -0.59 11.58 -16.56 -0.19 -0.79 16 26 N -0.46 -4.60 3.15 -121.28 -0.38 -4.99 16 27 C 0.07 0.45 10.98 59.84 0.66 1.11 16 28 C 0.12 2.23 5.10 -3.71 -0.02 2.21 16 29 H 0.04 0.97 5.97 -51.93 -0.31 0.66 16 30 H 0.04 1.16 7.21 -51.93 -0.37 0.79 16 31 H -0.01 -0.14 7.83 -51.93 -0.41 -0.54 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.87 7.68 -51.93 -0.40 0.47 16 42 H 0.10 1.07 7.95 -51.92 -0.41 0.66 16 43 H 0.10 1.47 8.10 -51.93 -0.42 1.05 16 44 H 0.09 1.11 7.02 -51.93 -0.36 0.74 16 45 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.65 7.03 -51.93 -0.37 0.29 16 49 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.11 2.68 4.83 -51.93 -0.25 2.43 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -35.23 399.20 -10.04 -45.28 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.63 Total: 0.70 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.55 Total: 5.81 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.94 Total: -63.82 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.23 -10.04 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265393321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.949 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds