Wall clock time and date at job start Sat Apr 11 2020 04:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 120.00274 * 2 1 4 4 H 1.08003 * 119.99955 * 201.83520 * 3 2 1 5 5 C 1.38810 * 119.99787 * 21.83859 * 3 2 1 6 6 N 1.31620 * 119.99976 * 11.17595 * 5 3 2 7 7 Si 1.86800 * 119.99756 * 191.18073 * 5 3 2 8 8 H 1.48495 * 109.47173 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47124 * 120.00095 * 7 5 3 10 10 H 1.48500 * 109.46974 * 239.99446 * 7 5 3 11 11 C 1.46501 * 119.99893 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47308 * 269.99985 * 11 2 1 13 13 H 1.09001 * 109.52572 * 304.91902 * 12 11 2 14 14 C 1.53043 * 109.49654 * 184.83599 * 12 11 2 15 15 C 1.53046 * 109.53511 * 178.68172 * 14 12 11 16 16 C 1.52762 * 109.38123 * 61.24426 * 15 14 12 17 17 N 1.46924 * 109.00730 * 305.58411 * 16 15 14 18 18 C 1.34776 * 120.63436 * 233.58575 * 17 16 15 19 19 O 1.21275 * 120.00555 * 179.72076 * 18 17 16 20 20 C 1.50705 * 119.99668 * 359.71962 * 18 17 16 21 21 C 1.52995 * 109.47055 * 180.02562 * 20 18 17 22 22 C 1.50705 * 109.47055 * 180.02562 * 21 20 18 23 23 N 1.30495 * 125.65218 * 270.17775 * 22 21 20 24 24 C 1.34125 * 109.25671 * 180.29370 * 23 22 21 25 25 C 1.34670 * 108.01977 * 359.72123 * 24 23 22 26 26 N 1.35050 * 125.64830 * 89.99947 * 22 21 20 27 27 C 1.46493 * 126.39452 * 359.97438 * 26 22 21 28 28 C 1.46927 * 118.73844 * 53.31318 * 17 16 15 29 29 H 1.08999 * 109.46489 * 275.13913 * 1 2 3 30 30 H 1.08998 * 109.46858 * 35.13592 * 1 2 3 31 31 H 1.08993 * 109.47188 * 155.13981 * 1 2 3 32 32 H 0.97004 * 119.99853 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47102 * 149.99957 * 11 2 1 34 34 H 1.09002 * 109.47257 * 30.00082 * 11 2 1 35 35 H 1.08991 * 109.46122 * 298.70410 * 14 12 11 36 36 H 1.09000 * 109.46236 * 58.66718 * 14 12 11 37 37 H 1.09003 * 109.49463 * 181.31673 * 15 14 12 38 38 H 1.08996 * 109.49706 * 301.38138 * 15 14 12 39 39 H 1.09001 * 109.50935 * 185.70289 * 16 15 14 40 40 H 1.09003 * 109.43306 * 65.42287 * 16 15 14 41 41 H 1.09001 * 109.46879 * 60.00128 * 20 18 17 42 42 H 1.09007 * 109.47066 * 300.00358 * 20 18 17 43 43 H 1.09001 * 109.47190 * 60.00297 * 21 20 18 44 44 H 1.08994 * 109.47259 * 299.99985 * 21 20 18 45 45 H 1.08002 * 125.99383 * 179.72914 * 24 23 22 46 46 H 1.07999 * 126.59006 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47143 * 269.71021 * 27 26 22 48 48 H 1.09001 * 109.47663 * 29.71388 * 27 26 22 49 49 H 1.09003 * 109.46832 * 149.71031 * 27 26 22 50 50 H 1.08994 * 109.58809 * 66.42768 * 28 17 16 51 51 H 1.09002 * 109.58511 * 186.71227 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1717 1.2194 -0.3479 5 6 1.5305 2.3449 0.4472 6 7 0.3743 2.2741 1.0723 7 14 2.3378 4.0050 0.1617 8 1 3.6227 3.8134 -0.5577 9 1 1.4369 4.8602 -0.6522 10 1 2.5958 4.6613 1.4686 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 2.9656 -0.9152 1.9816 14 6 3.3206 -2.9715 1.4435 15 6 3.6036 -3.3960 2.8864 16 6 2.2851 -3.7156 3.5886 17 7 1.3847 -2.5612 3.4645 18 6 0.8198 -2.0102 4.5570 19 8 0.0823 -1.0544 4.4418 20 6 1.1047 -2.5819 5.9220 21 6 0.3450 -1.7789 6.9799 22 6 0.6304 -2.3502 8.3449 23 7 -0.0531 -3.2938 8.9326 24 6 0.4821 -3.5432 10.1369 25 6 1.5410 -2.7272 10.2992 26 7 1.6378 -1.9727 9.1613 27 6 2.6427 -0.9437 8.8833 28 6 1.1166 -2.0151 2.1271 29 1 -0.3632 0.0921 1.0236 30 1 -0.3633 0.8404 -0.5914 31 1 -0.3633 -0.9324 -0.4320 32 1 -0.0583 3.0840 1.3851 33 1 3.1499 -1.1382 -0.5144 34 1 1.6084 -2.0282 -0.5148 35 1 2.7964 -3.7742 0.9250 36 1 4.2621 -2.7648 0.9346 37 1 4.2412 -4.2801 2.8871 38 1 4.1063 -2.5844 3.4124 39 1 2.4742 -3.9198 4.6425 40 1 1.8276 -4.5878 3.1217 41 1 2.1746 -2.5272 6.1228 42 1 0.7816 -3.6225 5.9548 43 1 -0.7249 -1.8340 6.7789 44 1 0.6677 -0.7384 6.9472 45 1 0.1263 -4.2709 10.8513 46 1 2.1890 -2.6772 11.1618 47 1 3.5039 -1.3994 8.3947 48 1 2.2139 -0.1842 8.2295 49 1 2.9580 -0.4817 9.8188 50 1 0.5619 -2.7458 1.5385 51 1 0.5327 -1.0990 2.2168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265393321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:50 Heat of formation + Delta-G solvation = 23.023730 kcal Electronic energy + Delta-G solvation = -29794.222205 eV Core-core repulsion = 25922.318612 eV Total energy + Delta-G solvation = -3871.903594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.04834 -41.22589 -38.96097 -37.19613 -35.07896 -34.78641 -34.27539 -33.12184 -31.71332 -30.05870 -28.27506 -27.89596 -27.31366 -26.63291 -24.96442 -23.82379 -22.38786 -22.29380 -21.19012 -20.63461 -19.79610 -18.70265 -18.38663 -17.59872 -17.05494 -16.85385 -16.76217 -16.44686 -15.87599 -15.57433 -15.44589 -15.17623 -14.92693 -14.77834 -14.61886 -14.32820 -13.97272 -13.94775 -13.90206 -13.64819 -13.59375 -13.43281 -13.35239 -13.00930 -12.80635 -12.67198 -12.52369 -12.32297 -12.22094 -12.05842 -11.98851 -11.80618 -11.61540 -11.49979 -11.21652 -10.95770 -10.80603 -10.60498 -10.56447 -9.55816 -9.32163 -8.73684 -7.78475 -5.26219 1.06679 1.43168 1.43873 1.54634 1.65327 1.86771 2.04537 2.22239 2.51431 3.29385 3.34618 3.66414 3.71137 3.84064 3.91622 3.95759 3.99972 4.06643 4.12943 4.16933 4.22033 4.35919 4.41348 4.43403 4.57712 4.62711 4.65549 4.65850 4.69040 4.76480 4.84689 4.89941 4.91871 4.94941 4.99742 5.01234 5.08081 5.18799 5.28995 5.35809 5.36391 5.48380 5.58425 5.64315 5.67560 5.81209 5.85863 6.21443 6.35258 6.50674 7.15502 7.17749 7.24498 7.91859 8.34927 9.24308 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.003032 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.820630 B = 9233.648685 C =10366.572148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.617 5.617 3 C -0.256 4.256 4 H 0.072 0.928 5 C -0.058 4.058 6 N -0.936 5.936 7 Si 0.965 3.035 8 H -0.262 1.262 9 H -0.293 1.293 10 H -0.297 1.297 11 C 0.153 3.847 12 C -0.107 4.107 13 H 0.031 0.969 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.500 3.500 19 O -0.588 6.588 20 C -0.110 4.110 21 C -0.013 4.013 22 C 0.192 3.808 23 N -0.526 5.526 24 C -0.058 4.058 25 C -0.046 4.046 26 N -0.456 5.456 27 C 0.060 3.940 28 C 0.127 3.873 29 H 0.001 0.999 30 H 0.012 0.988 31 H 0.026 0.974 32 H 0.242 0.758 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.186 0.814 46 H 0.212 0.788 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.111 0.889 50 H 0.064 0.936 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 -16.690 15.266 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.340 5.340 3 C -0.386 4.386 4 H 0.090 0.910 5 C -0.253 4.253 6 N -0.583 5.583 7 Si 0.794 3.206 8 H -0.187 1.187 9 H -0.220 1.220 10 H -0.224 1.224 11 C 0.027 3.973 12 C -0.129 4.129 13 H 0.050 0.950 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.020 4.020 17 N -0.343 5.343 18 C 0.289 3.711 19 O -0.469 6.469 20 C -0.150 4.150 21 C -0.053 4.053 22 C -0.070 4.070 23 N -0.246 5.246 24 C -0.205 4.205 25 C -0.179 4.179 26 N -0.138 5.138 27 C -0.081 4.081 28 C 0.005 3.995 29 H 0.019 0.981 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.203 0.797 46 H 0.228 0.772 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.130 0.870 50 H 0.082 0.918 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.045 -16.360 14.873 23.889 hybrid contribution 0.399 1.997 0.266 2.053 sum 9.443 -14.363 15.139 22.906 Atomic orbital electron populations 1.20528 0.83148 0.95369 0.97291 1.44182 1.01887 1.01930 1.86035 1.19536 0.97676 0.86512 1.34890 0.91012 1.25811 0.98444 1.01860 0.99188 1.70304 1.18870 1.26800 1.42335 0.85221 0.78223 0.80357 0.76785 1.18651 1.21974 1.22425 1.21064 0.95933 0.86587 0.93701 1.21980 0.95103 0.97393 0.98387 0.95034 1.21532 0.99548 0.95979 0.97517 1.21831 0.96777 1.02631 0.95362 1.21998 0.89774 0.87116 1.03148 1.48320 1.47059 1.32738 1.06153 1.21287 0.79557 0.82679 0.87541 1.90777 1.39267 1.29549 1.87275 1.21507 1.03128 1.01706 0.88690 1.19535 1.01873 0.98495 0.85381 1.23009 0.89957 0.97936 0.96096 1.70192 1.29389 1.15844 1.09137 1.22766 0.97537 1.04510 0.95697 1.23292 1.03850 0.97823 0.92926 1.45544 1.23755 1.30144 1.14379 1.22374 0.90740 0.89947 1.05083 1.21469 0.97598 0.98286 0.82194 0.98070 0.96937 0.95540 0.94817 0.92850 0.92229 0.90337 0.91078 0.87328 0.92916 0.87664 0.89497 0.86790 0.86796 0.90311 0.90272 0.79655 0.77162 0.88655 0.89929 0.87010 0.91753 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.57 7.91 127.77 1.01 10.58 16 2 N -0.62 -31.72 2.77 -726.94 -2.01 -33.73 16 3 C -0.26 -14.43 9.68 84.03 0.81 -13.62 16 4 H 0.07 3.90 7.84 -2.91 -0.02 3.87 16 5 C -0.06 -3.42 5.14 84.86 0.44 -2.99 16 6 N -0.94 -59.14 10.54 21.65 0.23 -58.92 16 7 Si 0.97 47.04 29.57 68.60 2.03 49.07 16 8 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 9 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 10 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 11 C 0.15 6.03 5.18 86.38 0.45 6.48 16 12 C -0.11 -3.78 2.55 -10.72 -0.03 -3.81 16 13 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 14 C -0.11 -2.51 5.17 30.62 0.16 -2.35 16 15 C -0.13 -2.32 6.06 30.53 0.19 -2.13 16 16 C 0.10 1.90 6.31 86.22 0.54 2.44 16 17 N -0.61 -18.74 2.98 -819.74 -2.44 -21.18 16 18 C 0.50 17.05 7.70 87.66 0.67 17.72 16 19 O -0.59 -27.45 15.39 -3.02 -0.05 -27.50 16 20 C -0.11 -2.56 4.03 29.85 0.12 -2.44 16 21 C -0.01 -0.35 4.81 29.85 0.14 -0.21 16 22 C 0.19 4.71 7.16 138.13 0.99 5.70 16 23 N -0.53 -14.43 11.25 -188.12 -2.12 -16.55 16 24 C -0.06 -1.19 11.87 83.52 0.99 -0.19 16 25 C -0.05 -0.71 11.58 83.09 0.96 0.25 16 26 N -0.46 -8.28 3.15 -537.63 -1.69 -9.98 16 27 C 0.06 0.67 10.98 127.77 1.40 2.08 16 28 C 0.13 4.80 5.10 86.36 0.44 5.24 16 29 H 0.00 0.07 5.97 -2.39 -0.01 0.05 16 30 H 0.01 0.69 7.21 -2.39 -0.02 0.67 16 31 H 0.03 1.18 7.83 -2.39 -0.02 1.16 16 32 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 34 H 0.06 2.07 7.86 -2.39 -0.02 2.05 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.43 5.93 -2.39 -0.01 1.42 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 2.03 7.68 -2.39 -0.02 2.01 16 42 H 0.11 2.31 7.95 -2.38 -0.02 2.29 16 43 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 44 H 0.08 2.16 7.02 -2.39 -0.02 2.14 16 45 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 46 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 1.11 7.03 -2.39 -0.02 1.10 16 49 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.05 2.75 4.83 -2.39 -0.01 2.73 16 Total: -1.00 -84.60 399.20 4.14 -80.46 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.90 Total: 15.54 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 9.29 Total: 22.78 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -8.04 Total: -140.35 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -84.60 4.14 -80.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265393321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.489 kcal (2) G-P(sol) polarization free energy of solvation -84.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds