Wall clock time and date at job start Sat Apr 11 2020 04:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 C 1.36935 * 120.00067 * 275.30780 * 3 2 1 5 5 H 1.08000 * 119.99863 * 37.57745 * 4 3 2 6 6 C 1.38814 * 120.00163 * 217.58058 * 4 3 2 7 7 N 1.31624 * 119.99831 * 21.42870 * 6 4 3 8 8 Si 1.86795 * 120.00125 * 201.42571 * 6 4 3 9 9 H 1.48504 * 109.46809 * 89.99963 * 8 6 4 10 10 H 1.48501 * 109.47469 * 210.00035 * 8 6 4 11 11 H 1.48503 * 109.47332 * 330.00201 * 8 6 4 12 12 C 1.46504 * 119.99753 * 95.31025 * 3 2 1 13 13 C 1.52991 * 109.47311 * 269.99430 * 12 3 2 14 14 C 1.52997 * 109.47451 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.47485 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00226 * 179.97438 * 15 14 13 17 17 O 1.21290 * 119.99981 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00219 * 179.97438 * 16 15 14 19 19 H 1.08996 * 109.46739 * 300.02090 * 18 16 15 20 20 C 1.53107 * 109.46143 * 60.00575 * 18 16 15 21 21 C 1.53370 * 109.51126 * 190.29024 * 20 18 16 22 22 C 1.50837 * 108.37903 * 310.06167 * 21 20 18 23 23 C 1.39295 * 127.90072 * 196.54519 * 22 21 20 24 24 N 1.31071 * 108.08262 * 179.97438 * 23 22 21 25 25 N 1.40298 * 108.26742 * 359.97438 * 24 23 22 26 26 C 1.46498 * 126.09289 * 180.02562 * 25 24 23 27 27 C 1.34327 * 107.81505 * 0.06710 * 25 24 23 28 28 C 1.50825 * 128.02801 * 179.79630 * 27 25 24 29 29 H 1.08998 * 109.46889 * 59.99522 * 1 2 3 30 30 H 1.08999 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46777 * 300.00471 * 1 2 3 32 32 H 1.08998 * 109.47125 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.46574 * 120.00093 * 2 1 3 34 34 H 0.97000 * 119.99807 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46477 * 149.99789 * 12 3 2 36 36 H 1.09000 * 109.47409 * 30.00228 * 12 3 2 37 37 H 1.09004 * 109.46961 * 59.99936 * 13 12 3 38 38 H 1.09000 * 109.47536 * 300.00720 * 13 12 3 39 39 H 1.09004 * 109.47300 * 59.99887 * 14 13 12 40 40 H 1.09004 * 109.46782 * 300.00359 * 14 13 12 41 41 H 0.96999 * 119.99595 * 0.02562 * 15 14 13 42 42 H 1.09007 * 109.46551 * 310.29720 * 20 18 16 43 43 H 1.09001 * 109.47092 * 70.28477 * 20 18 16 44 44 H 1.09000 * 109.68169 * 69.78795 * 21 20 18 45 45 H 1.08999 * 109.68105 * 190.34399 * 21 20 18 46 46 H 1.08004 * 125.95976 * 359.89787 * 23 22 21 47 47 H 1.09005 * 109.47069 * 270.02967 * 26 25 24 48 48 H 1.08998 * 109.47152 * 30.02194 * 26 25 24 49 49 H 1.08994 * 109.47501 * 150.02547 * 26 25 24 50 50 H 1.09002 * 109.68486 * 76.93041 * 28 27 25 51 51 H 1.08997 * 109.68666 * 316.37126 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3028 2.7980 -0.6490 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0394 10 1 4.4551 4.5695 -3.1909 11 1 2.2167 3.8357 -3.7671 12 6 2.3732 2.0326 1.2633 13 6 1.1427 2.7383 1.8366 14 6 1.5134 3.4191 3.1556 15 7 0.3350 4.0943 3.7048 16 6 0.4247 4.7651 4.8702 17 8 1.4813 4.8103 5.4642 18 6 -0.7874 5.4601 5.4349 19 1 -1.1397 6.2093 4.7260 20 6 -1.8948 4.4326 5.6839 21 6 -3.2045 5.1603 6.0115 22 6 -2.9262 6.1786 7.0889 23 6 -3.8452 6.8325 7.9062 24 7 -3.1822 7.6338 8.7040 25 7 -1.8150 7.5101 8.4145 26 6 -0.7242 8.2301 9.0762 27 6 -1.6845 6.6146 7.4219 28 6 -0.4155 6.1428 6.7570 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.0490 3.4031 -0.7830 35 1 3.1618 2.7640 1.0859 36 1 2.7256 1.2833 1.9722 37 1 0.3542 2.0069 2.0138 38 1 0.7904 3.4876 1.1277 39 1 2.3018 4.1506 2.9779 40 1 1.8660 2.6700 3.8646 41 1 -0.5100 4.0578 3.2300 42 1 -2.0318 3.8227 4.7909 43 1 -1.6155 3.7931 6.5212 44 1 -3.5785 5.6625 5.1193 45 1 -3.9441 4.4428 6.3668 46 1 -4.9172 6.7030 7.8853 47 1 -0.5324 9.1642 8.5480 48 1 -1.0045 8.4467 10.1070 49 1 0.1758 7.6154 9.0659 50 1 0.0971 5.4329 7.4062 51 1 0.2341 6.9953 6.5591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266077142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:59 Heat of formation + Delta-G solvation = 39.342309 kcal Electronic energy + Delta-G solvation = -28694.641083 eV Core-core repulsion = 24823.445116 eV Total energy + Delta-G solvation = -3871.195967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82468 -39.82464 -36.66651 -36.23503 -34.83426 -33.91333 -31.87569 -31.43414 -30.54294 -29.86337 -28.47019 -26.87372 -25.60851 -24.23032 -23.26298 -22.63533 -21.20712 -21.05188 -20.41425 -19.83713 -18.93589 -17.44566 -16.74595 -16.49814 -15.84673 -15.67961 -15.42248 -14.96063 -14.75268 -14.46227 -14.32074 -13.89910 -13.76960 -13.69304 -13.35501 -13.25419 -13.22130 -12.96875 -12.70779 -12.57248 -12.37744 -12.12982 -11.85541 -11.60714 -11.45270 -11.20952 -11.16264 -11.03841 -10.98373 -10.78058 -10.75662 -10.57877 -10.46799 -10.05967 -9.76625 -9.60705 -9.54531 -9.49490 -8.86136 -8.48613 -8.44937 -6.57935 -5.79746 -3.39188 1.60810 2.21720 2.54943 2.67583 3.25942 3.34400 3.42332 3.42938 4.19474 4.27073 4.40794 4.46068 4.55448 4.72950 4.81324 4.83475 5.02964 5.06808 5.07792 5.11456 5.23513 5.27794 5.35240 5.39929 5.58610 5.62818 5.64182 5.66582 5.78503 5.83993 5.95317 5.97383 6.05102 6.07431 6.27591 6.34506 6.41440 6.42687 6.46441 6.57448 6.73610 6.75510 6.77372 6.90311 7.08123 7.16567 7.46002 7.61994 7.66623 7.81393 8.29331 8.51360 9.18649 9.80906 10.39817 11.19624 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.002195 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.037615 B =12754.328955 C =13357.798084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.722 5.722 16 C 0.514 3.486 17 O -0.545 6.545 18 C -0.100 4.100 19 H 0.103 0.897 20 C -0.111 4.111 21 C -0.037 4.037 22 C -0.245 4.245 23 C 0.055 3.945 24 N -0.304 5.304 25 N -0.368 5.368 26 C 0.098 3.902 27 C 0.090 3.910 28 C -0.036 4.036 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.399 0.601 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.182 0.818 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 6.300 16.453 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.023 3.977 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.373 5.373 16 C 0.300 3.700 17 O -0.423 6.423 18 C -0.122 4.122 19 H 0.121 0.879 20 C -0.149 4.149 21 C -0.075 4.075 22 C -0.256 4.256 23 C -0.130 4.130 24 N -0.125 5.125 25 N -0.149 5.149 26 C -0.043 4.043 27 C -0.038 4.038 28 C -0.075 4.075 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.233 0.767 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.199 0.801 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.976 7.334 17.876 23.274 hybrid contribution -0.430 0.331 -1.466 1.563 sum -13.406 7.665 16.410 22.533 Atomic orbital electron populations 1.22368 1.00159 0.98890 1.01097 1.20848 0.91678 0.87398 0.98714 1.43748 1.76048 1.08188 1.02499 1.18991 1.04621 1.21160 0.94167 0.92303 1.25197 0.94215 1.01327 0.98087 1.70003 1.03193 1.37202 1.42453 0.86411 0.76954 0.82626 0.81498 1.21325 1.21739 1.20280 1.20795 0.94459 0.96643 0.85759 1.22532 1.02363 0.99870 0.93906 1.21495 0.87089 0.96128 0.95643 1.46174 1.14544 1.53443 1.23109 1.20421 0.89674 0.78888 0.81047 1.90701 1.30415 1.61301 1.59878 1.21295 0.94591 0.98812 0.97496 0.87937 1.21625 0.93570 0.96934 1.02777 1.19966 0.96788 0.95078 0.95659 1.19912 0.91424 1.08032 1.06270 1.23562 1.00115 0.95049 0.94268 1.77517 0.86094 1.24430 1.24507 1.48189 1.05888 1.32763 1.28062 1.21885 0.86757 0.96915 0.98750 1.20917 0.97434 0.93367 0.92119 1.20078 0.91610 1.00905 0.94936 0.93278 0.94636 0.93796 0.93909 0.94848 0.93514 0.88769 0.95695 0.93030 0.91735 0.91527 0.91985 0.76664 0.90556 0.90955 0.90965 0.90628 0.80110 0.90637 0.89240 0.89286 0.88609 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.21 37.16 0.38 -2.49 16 2 C 0.14 2.87 6.44 -4.04 -0.03 2.85 16 3 N -0.58 -13.92 2.43 -173.24 -0.42 -14.34 16 4 C -0.26 -6.84 9.45 -15.06 -0.14 -6.99 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.99 11.47 55.49 0.64 -24.35 16 8 Si 0.90 21.09 29.60 -169.99 -5.03 16.06 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.15 3.32 5.33 -4.04 -0.02 3.30 16 13 C -0.15 -2.59 5.65 -26.74 -0.15 -2.74 16 14 C 0.12 1.91 5.67 -4.04 -0.02 1.89 16 15 N -0.72 -9.26 5.37 -60.29 -0.32 -9.59 16 16 C 0.51 6.74 7.15 -10.99 -0.08 6.66 16 17 O -0.55 -9.22 15.83 5.55 0.09 -9.13 16 18 C -0.10 -0.96 2.50 -91.52 -0.23 -1.18 16 19 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 20 C -0.11 -0.89 5.17 -26.48 -0.14 -1.03 16 21 C -0.04 -0.27 6.28 -27.62 -0.17 -0.45 16 22 C -0.25 -2.39 5.91 -105.05 -0.62 -3.01 16 23 C 0.05 0.54 12.00 -17.48 -0.21 0.33 16 24 N -0.30 -3.57 12.59 30.54 0.38 -3.18 16 25 N -0.37 -3.84 4.00 -63.88 -0.26 -4.10 16 26 C 0.10 0.66 11.32 59.85 0.68 1.34 16 27 C 0.09 0.93 6.73 -82.33 -0.55 0.37 16 28 C -0.04 -0.35 4.56 -27.63 -0.13 -0.48 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.73 6.64 -51.93 -0.34 0.38 16 32 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.03 0.64 7.83 -51.93 -0.41 0.24 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.09 2.40 5.52 -51.93 -0.29 2.11 16 36 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 37 H 0.05 0.85 6.64 -51.93 -0.34 0.51 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.40 4.13 7.80 -40.82 -0.32 3.81 16 42 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 43 H 0.07 0.64 8.11 -51.93 -0.42 0.21 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.47 7.90 -51.93 -0.41 0.06 16 50 H 0.10 1.00 7.79 -51.93 -0.40 0.60 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -32.64 407.26 -9.08 -41.72 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.77 Total: 2.16 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.52 Total: -1.38 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.02 Total: -55.57 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.64 -9.08 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266077142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.058 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds