Wall clock time and date at job start Sat Apr 11 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47089 * 2 1 4 4 C 1.36939 * 120.00130 * 275.30594 * 3 2 1 5 5 H 1.08001 * 119.99802 * 37.58152 * 4 3 2 6 6 C 1.38812 * 120.00360 * 217.57841 * 4 3 2 7 7 N 1.31614 * 119.99776 * 21.43272 * 6 4 3 8 8 Si 1.86797 * 119.99902 * 201.43286 * 6 4 3 9 9 H 1.48495 * 109.47468 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46913 * 120.00276 * 8 6 4 11 11 H 1.48501 * 109.46881 * 239.99885 * 8 6 4 12 12 C 1.46507 * 120.00187 * 95.30873 * 3 2 1 13 13 C 1.53000 * 109.47153 * 269.99743 * 12 3 2 14 14 C 1.52994 * 109.47017 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00268 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99677 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00165 * 180.02562 * 16 15 14 19 19 H 1.09003 * 109.39145 * 300.12167 * 18 16 15 20 20 C 1.53121 * 109.43438 * 59.99836 * 18 16 15 21 21 C 1.53489 * 109.34044 * 189.99471 * 20 18 16 22 22 C 1.50709 * 108.06004 * 311.29101 * 21 20 18 23 23 C 1.33862 * 128.67868 * 195.73269 * 22 21 20 24 24 N 1.34431 * 107.79589 * 179.91333 * 23 22 21 25 25 C 1.30786 * 109.32262 * 0.02562 * 24 23 22 26 26 C 1.50701 * 125.72408 * 180.02562 * 25 24 23 27 27 N 1.34406 * 108.54947 * 0.05591 * 25 24 23 28 28 C 1.46477 * 128.44101 * 179.80616 * 27 25 24 29 29 H 1.09005 * 109.47210 * 60.00056 * 1 2 3 30 30 H 1.08997 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47074 * 300.00574 * 1 2 3 32 32 H 1.08996 * 109.46951 * 240.00033 * 2 1 3 33 33 H 1.08996 * 109.46662 * 119.99936 * 2 1 3 34 34 H 0.96998 * 119.99785 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47004 * 149.99727 * 12 3 2 36 36 H 1.08999 * 109.46634 * 30.00229 * 12 3 2 37 37 H 1.09000 * 109.46757 * 59.99785 * 13 12 3 38 38 H 1.08998 * 109.47369 * 300.00192 * 13 12 3 39 39 H 1.09000 * 109.47365 * 60.00363 * 14 13 12 40 40 H 1.08999 * 109.47232 * 299.99859 * 14 13 12 41 41 H 0.96999 * 119.99449 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.49728 * 70.02503 * 20 18 16 43 43 H 1.09004 * 109.49290 * 309.96326 * 20 18 16 44 44 H 1.09003 * 109.74116 * 70.93277 * 21 20 18 45 45 H 1.08997 * 109.74616 * 191.64480 * 21 20 18 46 46 H 1.08002 * 126.10006 * 359.91785 * 23 22 21 47 47 H 1.09000 * 109.46579 * 269.97064 * 26 25 24 48 48 H 1.08997 * 109.46728 * 29.97018 * 26 25 24 49 49 H 1.08995 * 109.46642 * 149.97498 * 26 25 24 50 50 H 1.08998 * 109.59606 * 317.13204 * 28 27 25 51 51 H 1.08996 * 109.60271 * 77.44788 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2795 -2.6584 9 1 1.7776 4.2134 -3.3321 10 1 3.2550 5.6023 -2.0015 11 1 4.1766 4.0963 -3.6639 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7383 1.8365 14 6 1.5130 3.4182 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4243 4.7643 4.8707 17 8 1.4805 4.8087 5.4650 18 6 -0.7881 5.4583 5.4359 19 1 -1.1414 6.2056 4.7254 20 6 -1.8943 4.4293 5.6850 21 6 -3.2019 5.1597 6.0203 22 6 -2.9029 6.1915 7.0774 23 6 -3.7583 6.8521 7.8672 24 7 -3.0406 7.6703 8.6564 25 6 -1.7699 7.5354 8.3778 26 6 -0.6397 8.2775 9.0433 27 7 -1.6413 6.6244 7.3981 28 6 -0.4155 6.1461 6.7545 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0489 3.4031 -0.7831 35 1 3.1617 2.7641 1.0860 36 1 2.7255 1.2833 1.9721 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4877 1.1277 39 1 2.3016 4.1496 2.9792 40 1 1.8650 2.6685 3.8648 41 1 -0.5103 4.0575 3.2301 42 1 -1.6123 3.7867 6.5191 43 1 -2.0353 3.8230 4.7902 44 1 -3.5896 5.6494 5.1270 45 1 -3.9353 4.4473 6.3980 46 1 -4.8331 6.7466 7.8699 47 1 -0.4420 9.2015 8.4998 48 1 -0.9149 8.5125 10.0714 49 1 0.2552 7.6554 9.0397 50 1 0.2450 6.9895 6.5538 51 1 0.0880 5.4351 7.4095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266077839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:02 Heat of formation + Delta-G solvation = 23.350473 kcal Electronic energy + Delta-G solvation = -28785.299834 eV Core-core repulsion = 24913.410409 eV Total energy + Delta-G solvation = -3871.889425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.65641 -40.05357 -36.80041 -36.36484 -34.98725 -33.63611 -31.95315 -31.88113 -31.01785 -30.16799 -28.57076 -26.69801 -25.83872 -24.55281 -23.50861 -22.70888 -21.28278 -21.14093 -20.44812 -19.90834 -19.24112 -17.48698 -16.81713 -16.70826 -15.99493 -15.88338 -15.62174 -15.04257 -14.83972 -14.53714 -14.29776 -14.14033 -13.97214 -13.79160 -13.48088 -13.36579 -13.28654 -13.12028 -12.67504 -12.66723 -12.42882 -12.27069 -12.13410 -11.67898 -11.58595 -11.51979 -11.39875 -11.20979 -11.09480 -10.81884 -10.65537 -10.50222 -10.15628 -10.12612 -9.93379 -9.74755 -9.68171 -9.61231 -9.01915 -8.53296 -8.42091 -6.62415 -5.84262 -3.43518 1.78815 2.38526 2.45532 2.89960 3.13649 3.29774 3.39249 3.40959 3.90117 4.17258 4.22850 4.27279 4.41167 4.42247 4.69459 4.81619 4.83631 4.93292 5.05545 5.17770 5.18351 5.21158 5.28305 5.33356 5.38283 5.39544 5.54189 5.54990 5.63867 5.67296 5.74937 5.89728 6.00543 6.14855 6.18280 6.28068 6.34511 6.37182 6.50866 6.53271 6.65316 6.68288 6.85859 6.96029 7.01576 7.11262 7.42978 7.60743 7.77465 7.87486 8.08467 8.46915 9.14161 9.76375 10.35166 11.15244 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.002217 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.928074 B =12627.719106 C =13241.434436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.120 3.880 15 N -0.719 5.719 16 C 0.519 3.481 17 O -0.541 6.541 18 C -0.121 4.121 19 H 0.108 0.892 20 C -0.117 4.117 21 C -0.043 4.043 22 C -0.030 4.030 23 C -0.022 4.022 24 N -0.495 5.495 25 C 0.209 3.791 26 C -0.069 4.069 27 N -0.451 5.451 28 C 0.124 3.876 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.169 0.831 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.098 0.902 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 5.232 15.070 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.369 5.369 16 C 0.303 3.697 17 O -0.419 6.419 18 C -0.143 4.143 19 H 0.126 0.874 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.144 4.144 23 C -0.170 4.170 24 N -0.215 5.215 25 C -0.053 4.053 26 C -0.128 4.128 27 N -0.134 5.134 28 C 0.001 3.999 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.234 0.766 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.186 0.814 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.116 0.884 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.497 5.806 15.998 21.115 hybrid contribution -0.176 0.230 -1.587 1.613 sum -12.673 6.037 14.412 20.118 Atomic orbital electron populations 1.22367 1.00160 0.98911 1.01063 1.20850 0.91670 0.87387 0.98753 1.43751 1.76042 1.08196 1.02481 1.19014 1.04660 1.21138 0.94146 0.92276 1.25195 0.94220 1.01342 0.98056 1.70005 1.03208 1.37226 1.42374 0.86373 0.77710 0.82268 0.81303 1.20098 1.21433 1.21586 1.20792 0.94385 0.96665 0.85809 1.22547 1.02486 0.99896 0.93777 1.21543 0.86875 0.96187 0.95763 1.46158 1.14770 1.53159 1.22828 1.20088 0.89150 0.79110 0.81350 1.90731 1.30156 1.61192 1.59799 1.21581 0.95727 0.99384 0.97584 0.87424 1.21687 0.93210 0.96984 1.03583 1.20218 0.97423 0.94713 0.95745 1.21132 0.84514 1.04450 1.04341 1.21812 0.99417 0.98522 0.97235 1.70456 1.01067 1.23852 1.26105 1.23127 0.94842 0.94759 0.92580 1.20193 0.92664 0.98951 1.00967 1.45286 1.07089 1.31868 1.29192 1.21700 0.84247 1.00498 0.93445 0.93262 0.94609 0.93859 0.93858 0.94845 0.93536 0.88738 0.95662 0.93007 0.91681 0.91338 0.91813 0.76593 0.90564 0.89660 0.89635 0.88955 0.81399 0.90160 0.89166 0.90719 0.88397 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.21 37.16 0.38 -2.43 16 2 C 0.14 2.82 6.44 -4.04 -0.03 2.79 16 3 N -0.58 -13.70 2.43 -173.24 -0.42 -14.12 16 4 C -0.26 -6.76 9.45 -15.06 -0.14 -6.91 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.70 11.47 55.49 0.64 -24.06 16 8 Si 0.89 20.82 29.60 -169.99 -5.03 15.79 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 C 0.15 3.25 5.33 -4.04 -0.02 3.23 16 13 C -0.15 -2.50 5.65 -26.73 -0.15 -2.65 16 14 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 15 N -0.72 -8.57 5.37 -60.30 -0.32 -8.89 16 16 C 0.52 6.30 7.15 -10.99 -0.08 6.22 16 17 O -0.54 -8.62 15.84 5.56 0.09 -8.53 16 18 C -0.12 -1.06 2.52 -91.55 -0.23 -1.29 16 19 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 20 C -0.12 -0.83 5.22 -26.42 -0.14 -0.97 16 21 C -0.04 -0.29 6.31 -27.62 -0.17 -0.46 16 22 C -0.03 -0.30 6.57 -81.73 -0.54 -0.83 16 23 C -0.02 -0.24 11.84 -17.95 -0.21 -0.46 16 24 N -0.50 -6.34 11.27 -11.02 -0.12 -6.46 16 25 C 0.21 2.31 7.94 -155.75 -1.24 1.07 16 26 C -0.07 -0.52 10.24 36.01 0.37 -0.16 16 27 N -0.45 -4.62 3.13 -109.41 -0.34 -4.96 16 28 C 0.12 1.16 5.32 -3.89 -0.02 1.14 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.70 6.64 -51.93 -0.34 0.36 16 32 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 34 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.09 2.36 5.52 -51.93 -0.29 2.07 16 36 H 0.02 0.52 7.86 -51.93 -0.41 0.11 16 37 H 0.05 0.82 6.64 -51.93 -0.34 0.48 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.40 3.77 7.81 -40.82 -0.32 3.45 16 42 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 43 H 0.08 0.50 7.31 -51.93 -0.38 0.12 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.48 7.95 -51.93 -0.41 0.06 16 50 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.10 0.96 7.81 -51.93 -0.41 0.56 16 LS Contribution 406.68 15.07 6.13 6.13 Total: -1.00 -32.20 406.68 -10.49 -42.69 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.77 Total: 2.09 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.33 Total: 0.33 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.58 Total: -58.50 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.20 -10.49 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266077839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.043 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds