Wall clock time and date at job start Sat Apr 11 2020 04:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46983 * 2 1 4 4 C 1.34775 * 120.00279 * 89.99829 * 3 2 1 5 5 O 1.21281 * 120.00258 * 174.97732 * 4 3 2 6 6 C 1.50696 * 120.00153 * 354.98051 * 4 3 2 7 7 C 1.52995 * 109.47536 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.47414 * 179.97438 * 7 6 4 9 9 C 1.39868 * 126.04089 * 264.69499 * 8 7 6 10 10 N 1.30837 * 108.20389 * 179.81795 * 9 8 7 11 11 N 1.40084 * 108.20288 * 0.43289 * 10 9 8 12 12 C 1.46502 * 126.03971 * 179.73923 * 11 10 9 13 13 C 1.34948 * 107.92683 * 359.72430 * 11 10 9 14 14 C 1.50704 * 126.12844 * 179.97438 * 13 11 10 15 15 C 1.46508 * 119.99889 * 269.99773 * 3 2 1 16 16 H 1.09000 * 110.63905 * 178.17139 * 15 3 2 17 17 C 1.55152 * 110.71726 * 54.84056 * 15 3 2 18 18 C 1.54913 * 101.58144 * 277.13778 * 17 15 3 19 19 N 1.47427 * 104.83270 * 322.99316 * 18 17 15 20 20 C 1.36933 * 125.65250 * 204.09650 * 19 18 17 21 21 H 1.08001 * 120.00110 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99576 * 0.03224 * 20 19 18 23 23 N 1.31616 * 120.00347 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99724 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47063 * 60.00801 * 24 22 20 26 26 H 1.48502 * 109.46903 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47240 * 300.00560 * 24 22 20 28 28 C 1.47028 * 108.70050 * 24.12714 * 19 18 17 29 29 H 1.08999 * 109.47087 * 60.00005 * 1 2 3 30 30 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47293 * 300.00055 * 1 2 3 32 32 H 1.08996 * 109.47227 * 239.99688 * 2 1 3 33 33 H 1.09003 * 109.47113 * 119.99477 * 2 1 3 34 34 H 1.09005 * 109.47442 * 59.99285 * 6 4 3 35 35 H 1.08999 * 109.47382 * 299.99972 * 6 4 3 36 36 H 1.08999 * 109.47551 * 299.99736 * 7 6 4 37 37 H 1.08995 * 109.47327 * 59.99891 * 7 6 4 38 38 H 1.08004 * 125.89813 * 359.97438 * 9 8 7 39 39 H 1.09001 * 109.47166 * 269.98566 * 12 11 10 40 40 H 1.08999 * 109.46510 * 29.97948 * 12 11 10 41 41 H 1.08992 * 109.47229 * 149.98194 * 12 11 10 42 42 H 1.08990 * 109.47100 * 270.02548 * 14 13 11 43 43 H 1.09002 * 109.46944 * 30.02801 * 14 13 11 44 44 H 1.08997 * 109.47072 * 150.02248 * 14 13 11 45 45 H 1.09004 * 111.00749 * 35.20973 * 17 15 3 46 46 H 1.09000 * 111.00487 * 159.06430 * 17 15 3 47 47 H 1.08998 * 110.36844 * 204.15701 * 18 17 15 48 48 H 1.09004 * 110.46165 * 81.87627 * 18 17 15 49 49 H 0.97001 * 120.00332 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.88149 * 239.52272 * 28 19 18 51 51 H 1.08999 * 110.00990 * 118.43570 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.7327 3.1261 1.1692 6 6 1.8855 1.3485 2.4698 7 6 2.2402 2.2766 3.6332 8 6 1.8822 1.6086 4.9359 9 6 0.6924 1.7826 5.6502 10 7 0.7473 1.0367 6.7237 11 7 1.9798 0.3710 6.7314 12 6 2.4500 -0.5603 7.7600 13 6 2.6576 0.7389 5.6240 14 6 4.0319 0.2663 5.2253 15 6 2.2625 2.0718 -1.2688 16 1 2.5901 3.0962 -1.0918 17 6 0.9942 2.0436 -2.1620 18 6 1.1102 0.6474 -2.8230 19 7 2.5532 0.4614 -3.0611 20 6 3.1068 -0.3619 -4.0050 21 1 4.1805 -0.4288 -4.1004 22 6 2.2878 -1.1103 -4.8393 23 7 0.9793 -1.0283 -4.7235 24 14 3.0429 -2.2339 -6.1265 25 1 3.8971 -3.2483 -5.4583 26 1 1.9625 -2.9166 -6.8827 27 1 3.8694 -1.4296 -7.0621 28 6 3.2995 1.3056 -2.1167 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.4434 0.4169 2.5654 35 1 0.8167 1.1352 2.4875 36 1 3.3091 2.4894 3.6154 37 1 1.6826 3.2082 3.5378 38 1 -0.1307 2.4205 5.3637 39 1 2.9863 -0.0085 8.5320 40 1 1.5962 -1.0710 8.2052 41 1 3.1171 -1.2942 7.3080 42 1 4.7824 0.9352 5.6463 43 1 4.1925 -0.7436 5.6029 44 1 4.1147 0.2652 4.1385 45 1 0.0894 2.1161 -1.5584 46 1 1.0264 2.8346 -2.9114 47 1 0.5645 0.6277 -3.7663 48 1 0.7339 -0.1245 -2.1516 49 1 0.4070 -1.5510 -5.3068 50 1 3.9247 2.0109 -2.6641 51 1 3.9201 0.6842 -1.4710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267786621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:40 Heat of formation + Delta-G solvation = 73.231861 kcal Electronic energy + Delta-G solvation = -29771.948929 eV Core-core repulsion = 25902.222524 eV Total energy + Delta-G solvation = -3869.726406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51535 -39.99314 -37.58392 -34.72211 -34.47582 -33.45990 -32.28773 -30.97341 -30.44592 -29.24803 -27.59595 -26.95082 -26.65313 -24.60262 -23.89666 -22.73278 -21.05339 -20.39911 -20.12715 -19.40548 -18.39537 -17.18462 -16.98857 -16.52234 -15.99217 -15.61899 -15.47056 -14.70568 -14.51394 -14.23022 -13.99624 -13.79643 -13.71837 -13.47386 -13.28235 -12.95915 -12.92705 -12.72986 -12.55903 -12.34739 -12.20964 -12.07383 -11.90407 -11.80659 -11.61427 -11.37469 -11.18457 -11.05003 -10.87458 -10.84702 -10.58464 -10.36611 -10.22584 -10.13728 -9.84595 -9.54389 -9.44933 -9.33347 -8.64561 -8.41806 -8.20985 -6.84405 -5.67318 -3.08824 1.65381 2.29432 2.60188 2.92905 3.37522 3.39791 3.43591 3.44291 4.26552 4.42492 4.47531 4.73384 4.75578 4.79813 4.94105 5.05490 5.06802 5.16461 5.24442 5.27394 5.41116 5.42840 5.46470 5.48283 5.55382 5.56716 5.68253 5.69835 5.78162 5.83712 5.85959 5.94892 6.11360 6.16839 6.21977 6.22851 6.33977 6.44160 6.50606 6.51343 6.64583 6.70178 6.77238 6.82377 7.11843 7.49680 7.52969 7.61049 7.81912 7.85970 8.34555 8.51346 9.20278 9.80830 10.45686 11.35939 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.002486 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.844394 B =11261.882373 C =11636.304592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.511 3.489 5 O -0.554 6.554 6 C -0.133 4.133 7 C -0.022 4.022 8 C -0.234 4.234 9 C 0.056 3.944 10 N -0.302 5.302 11 N -0.377 5.377 12 C 0.101 3.899 13 C 0.085 3.915 14 C -0.094 4.094 15 C 0.126 3.874 16 H 0.098 0.902 17 C -0.158 4.158 18 C 0.139 3.861 19 N -0.602 5.602 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.127 3.873 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.182 0.818 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.032 0.968 49 H 0.252 0.748 50 H 0.031 0.969 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 1.464 21.571 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.026 4.026 3 N -0.323 5.323 4 C 0.300 3.700 5 O -0.432 6.432 6 C -0.173 4.173 7 C -0.061 4.061 8 C -0.245 4.245 9 C -0.130 4.130 10 N -0.122 5.122 11 N -0.160 5.160 12 C -0.040 4.040 13 C -0.042 4.042 14 C -0.153 4.153 15 C 0.023 3.977 16 H 0.116 0.884 17 C -0.198 4.198 18 C 0.015 3.985 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.000 4.000 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.199 0.801 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.048 0.952 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.759 1.395 22.576 22.632 hybrid contribution 0.678 -0.565 -1.322 1.590 sum 1.437 0.829 21.254 21.319 Atomic orbital electron populations 1.22432 0.96057 1.02312 1.02520 1.21794 0.94548 0.82276 1.04031 1.47965 1.64528 1.14260 1.05502 1.20693 0.77867 0.85942 0.85502 1.90649 1.44618 1.20441 1.87534 1.21724 1.03527 1.00014 0.91991 1.19582 1.02160 0.96894 0.87457 1.19879 0.96329 1.06809 1.01486 1.23793 0.98402 0.98501 0.92309 1.77353 1.00018 1.12449 1.22417 1.48378 1.12979 1.36234 1.18414 1.21808 1.00859 0.91552 0.89802 1.20885 0.96147 0.98301 0.88838 1.20492 0.90132 1.01151 1.03474 1.22095 0.96841 0.96395 0.82406 0.88412 1.23430 0.96036 1.01989 0.98306 1.22277 0.86028 0.89401 1.00828 1.44530 1.01560 1.49160 1.37670 1.19019 0.91443 1.16103 1.08463 0.90645 1.24756 0.95505 1.00402 0.99857 1.69784 1.01779 1.44364 1.41100 0.86176 0.77711 0.80382 0.81351 1.21293 1.21622 1.21221 1.21628 0.93569 0.93340 0.91425 0.90411 0.91886 0.93467 0.87379 0.91657 0.89490 0.88972 0.90843 0.90477 0.80076 0.90912 0.89367 0.89595 0.90110 0.91202 0.89333 0.91735 0.91281 0.87904 0.95050 0.93721 0.95162 0.95655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.06 37.16 0.34 -2.12 16 2 C 0.10 1.46 4.97 -4.04 -0.02 1.44 16 3 N -0.59 -9.57 2.45 -164.03 -0.40 -9.97 16 4 C 0.51 7.88 7.66 -10.99 -0.08 7.80 16 5 O -0.55 -10.16 15.37 5.56 0.09 -10.07 16 6 C -0.13 -1.54 4.35 -27.89 -0.12 -1.66 16 7 C -0.02 -0.24 4.54 -27.88 -0.13 -0.37 16 8 C -0.23 -2.53 5.35 -105.05 -0.56 -3.09 16 9 C 0.06 0.62 11.96 -17.37 -0.21 0.41 16 10 N -0.30 -3.66 12.58 30.63 0.39 -3.28 16 11 N -0.38 -3.80 4.01 -63.88 -0.26 -4.06 16 12 C 0.10 0.59 11.27 59.85 0.67 1.26 16 13 C 0.09 0.84 6.93 -82.26 -0.57 0.27 16 14 C -0.09 -0.65 9.80 36.01 0.35 -0.30 16 15 C 0.13 2.32 3.58 -66.10 -0.24 2.08 16 16 H 0.10 1.82 7.01 -51.93 -0.36 1.46 16 17 C -0.16 -2.97 6.09 -24.58 -0.15 -3.12 16 18 C 0.14 3.14 4.64 -2.53 -0.01 3.13 16 19 N -0.60 -14.71 2.97 -170.07 -0.51 -15.22 16 20 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -25.79 10.09 55.49 0.56 -25.23 16 24 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.13 2.66 6.25 -3.06 -0.02 2.64 16 29 H 0.08 1.23 4.34 -51.93 -0.23 1.01 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.58 6.94 -51.92 -0.36 0.22 16 32 H 0.11 2.05 5.18 -51.93 -0.27 1.78 16 33 H 0.07 0.83 6.48 -51.93 -0.34 0.50 16 34 H 0.09 0.91 6.87 -51.93 -0.36 0.56 16 35 H 0.09 1.01 6.94 -51.93 -0.36 0.65 16 36 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.18 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.32 7.05 -51.93 -0.37 -0.05 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.36 7.08 -51.93 -0.37 -0.01 16 44 H 0.09 0.64 7.51 -51.93 -0.39 0.25 16 45 H 0.06 1.11 6.45 -51.93 -0.33 0.77 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.10 2.70 5.87 -51.93 -0.30 2.40 16 48 H 0.03 0.71 4.04 -51.93 -0.21 0.50 16 49 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -32.48 389.50 -8.29 -40.77 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.00 Total: 2.76 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.00 Total: 1.89 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.22 Total: -57.76 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.48 -8.29 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267786621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.998 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds