Wall clock time and date at job start Sat Apr 11 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46983 * 2 1 4 4 C 1.34775 * 120.00279 * 89.99829 * 3 2 1 5 5 O 1.21281 * 120.00258 * 174.97732 * 4 3 2 6 6 C 1.50696 * 120.00153 * 354.98051 * 4 3 2 7 7 C 1.52995 * 109.47536 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.47414 * 179.97438 * 7 6 4 9 9 C 1.39868 * 126.04089 * 264.69499 * 8 7 6 10 10 N 1.30837 * 108.20389 * 179.81795 * 9 8 7 11 11 N 1.40084 * 108.20288 * 0.43289 * 10 9 8 12 12 C 1.46502 * 126.03971 * 179.73923 * 11 10 9 13 13 C 1.34948 * 107.92683 * 359.72430 * 11 10 9 14 14 C 1.50704 * 126.12844 * 179.97438 * 13 11 10 15 15 C 1.46508 * 119.99889 * 269.99773 * 3 2 1 16 16 H 1.09000 * 110.63905 * 178.17139 * 15 3 2 17 17 C 1.55152 * 110.71726 * 54.84056 * 15 3 2 18 18 C 1.54913 * 101.58144 * 277.13778 * 17 15 3 19 19 N 1.47427 * 104.83270 * 322.99316 * 18 17 15 20 20 C 1.36933 * 125.65250 * 204.09650 * 19 18 17 21 21 H 1.08001 * 120.00110 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99576 * 0.03224 * 20 19 18 23 23 N 1.31616 * 120.00347 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99724 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47063 * 60.00801 * 24 22 20 26 26 H 1.48502 * 109.46903 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47240 * 300.00560 * 24 22 20 28 28 C 1.47028 * 108.70050 * 24.12714 * 19 18 17 29 29 H 1.08999 * 109.47087 * 60.00005 * 1 2 3 30 30 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47293 * 300.00055 * 1 2 3 32 32 H 1.08996 * 109.47227 * 239.99688 * 2 1 3 33 33 H 1.09003 * 109.47113 * 119.99477 * 2 1 3 34 34 H 1.09005 * 109.47442 * 59.99285 * 6 4 3 35 35 H 1.08999 * 109.47382 * 299.99972 * 6 4 3 36 36 H 1.08999 * 109.47551 * 299.99736 * 7 6 4 37 37 H 1.08995 * 109.47327 * 59.99891 * 7 6 4 38 38 H 1.08004 * 125.89813 * 359.97438 * 9 8 7 39 39 H 1.09001 * 109.47166 * 269.98566 * 12 11 10 40 40 H 1.08999 * 109.46510 * 29.97948 * 12 11 10 41 41 H 1.08992 * 109.47229 * 149.98194 * 12 11 10 42 42 H 1.08990 * 109.47100 * 270.02548 * 14 13 11 43 43 H 1.09002 * 109.46944 * 30.02801 * 14 13 11 44 44 H 1.08997 * 109.47072 * 150.02248 * 14 13 11 45 45 H 1.09004 * 111.00749 * 35.20973 * 17 15 3 46 46 H 1.09000 * 111.00487 * 159.06430 * 17 15 3 47 47 H 1.08998 * 110.36844 * 204.15701 * 18 17 15 48 48 H 1.09004 * 110.46165 * 81.87627 * 18 17 15 49 49 H 0.97001 * 120.00332 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.88149 * 239.52272 * 28 19 18 51 51 H 1.08999 * 110.00990 * 118.43570 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.7327 3.1261 1.1692 6 6 1.8855 1.3485 2.4698 7 6 2.2402 2.2766 3.6332 8 6 1.8822 1.6086 4.9359 9 6 0.6924 1.7826 5.6502 10 7 0.7473 1.0367 6.7237 11 7 1.9798 0.3710 6.7314 12 6 2.4500 -0.5603 7.7600 13 6 2.6576 0.7389 5.6240 14 6 4.0319 0.2663 5.2253 15 6 2.2625 2.0718 -1.2688 16 1 2.5901 3.0962 -1.0918 17 6 0.9942 2.0436 -2.1620 18 6 1.1102 0.6474 -2.8230 19 7 2.5532 0.4614 -3.0611 20 6 3.1068 -0.3619 -4.0050 21 1 4.1805 -0.4288 -4.1004 22 6 2.2878 -1.1103 -4.8393 23 7 0.9793 -1.0283 -4.7235 24 14 3.0429 -2.2339 -6.1265 25 1 3.8971 -3.2483 -5.4583 26 1 1.9625 -2.9166 -6.8827 27 1 3.8694 -1.4296 -7.0621 28 6 3.2995 1.3056 -2.1167 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.4434 0.4169 2.5654 35 1 0.8167 1.1352 2.4875 36 1 3.3091 2.4894 3.6154 37 1 1.6826 3.2082 3.5378 38 1 -0.1307 2.4205 5.3637 39 1 2.9863 -0.0085 8.5320 40 1 1.5962 -1.0710 8.2052 41 1 3.1171 -1.2942 7.3080 42 1 4.7824 0.9352 5.6463 43 1 4.1925 -0.7436 5.6029 44 1 4.1147 0.2652 4.1385 45 1 0.0894 2.1161 -1.5584 46 1 1.0264 2.8346 -2.9114 47 1 0.5645 0.6277 -3.7663 48 1 0.7339 -0.1245 -2.1516 49 1 0.4070 -1.5510 -5.3068 50 1 3.9247 2.0109 -2.6641 51 1 3.9201 0.6842 -1.4710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267786621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:39 Heat of formation + Delta-G solvation = 54.797849 kcal Electronic energy + Delta-G solvation = -29772.748288 eV Core-core repulsion = 25902.222524 eV Total energy + Delta-G solvation = -3870.525764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25466 -41.33293 -39.09765 -36.23591 -35.34892 -34.23100 -33.97866 -31.93608 -31.67399 -30.97234 -28.79116 -27.93265 -27.48668 -26.42846 -24.89637 -23.96670 -22.03414 -21.91163 -21.54927 -20.16891 -19.71367 -18.90107 -18.39222 -17.38702 -17.04511 -16.69842 -16.56765 -16.47391 -15.64845 -15.53989 -15.19971 -15.00319 -14.79509 -14.37696 -14.23672 -13.98793 -13.91774 -13.72788 -13.52357 -13.44008 -13.34672 -13.25371 -13.04477 -12.97569 -12.91776 -12.87408 -12.70034 -12.55617 -12.22233 -12.07331 -12.01152 -11.92642 -11.73457 -11.60487 -11.36446 -11.34806 -10.69734 -10.59193 -10.15908 -9.58504 -9.18285 -8.81778 -7.72529 -5.15824 0.93475 1.49446 1.51339 1.57651 1.69020 1.71061 1.79492 2.13575 2.52541 3.37100 3.55690 3.71427 3.79053 3.83002 3.94132 4.08333 4.10804 4.17442 4.23617 4.32575 4.34071 4.39595 4.44097 4.48312 4.59475 4.63726 4.68233 4.70753 4.73986 4.76147 4.76851 4.85022 4.89860 4.98943 5.01603 5.06441 5.08865 5.15163 5.26227 5.31301 5.40970 5.45839 5.51005 5.69778 5.75712 5.76974 5.88841 6.18914 6.36970 6.58009 6.78267 7.16188 7.26567 7.82364 8.46405 9.27992 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.002486 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.844394 B =11261.882373 C =11636.304592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.512 3.488 5 O -0.584 6.584 6 C -0.121 4.121 7 C -0.011 4.011 8 C -0.252 4.252 9 C 0.047 3.953 10 N -0.336 5.336 11 N -0.381 5.381 12 C 0.091 3.909 13 C 0.088 3.912 14 C -0.094 4.094 15 C 0.139 3.861 16 H 0.098 0.902 17 C -0.144 4.144 18 C 0.147 3.853 19 N -0.618 5.618 20 C -0.237 4.237 21 H 0.075 0.925 22 C -0.059 4.059 23 N -0.942 5.942 24 Si 0.975 3.025 25 H -0.279 1.279 26 H -0.294 1.294 27 H -0.282 1.282 28 C 0.128 3.872 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.196 0.804 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.033 0.967 49 H 0.247 0.753 50 H 0.026 0.974 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 0.654 23.340 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.324 5.324 4 C 0.303 3.697 5 O -0.465 6.465 6 C -0.160 4.160 7 C -0.050 4.050 8 C -0.263 4.263 9 C -0.138 4.138 10 N -0.158 5.158 11 N -0.164 5.164 12 C -0.049 4.049 13 C -0.041 4.041 14 C -0.152 4.152 15 C 0.034 3.966 16 H 0.116 0.884 17 C -0.183 4.183 18 C 0.022 3.978 19 N -0.345 5.345 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.252 4.252 23 N -0.592 5.592 24 Si 0.804 3.196 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.209 1.209 28 C 0.002 3.998 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.378 0.582 24.383 24.428 hybrid contribution 0.545 -0.312 -1.807 1.913 sum 1.923 0.270 22.575 22.659 Atomic orbital electron populations 1.22352 0.94987 1.02868 1.02523 1.21757 0.95346 0.81451 1.03605 1.47999 1.64744 1.14638 1.04990 1.21333 0.76732 0.85515 0.86132 1.90641 1.45923 1.21956 1.87933 1.21716 1.04492 1.00272 0.89565 1.19416 1.01546 0.96434 0.87586 1.19879 0.96809 1.07922 1.01695 1.24104 0.99049 0.98490 0.92149 1.77295 1.01612 1.13612 1.23245 1.48719 1.12366 1.36204 1.19065 1.22144 1.01516 0.91623 0.89616 1.21332 0.96911 0.97445 0.88376 1.20602 0.88588 1.02540 1.03488 1.21806 0.95490 0.96166 0.83139 0.88361 1.23277 0.97265 0.99449 0.98330 1.22068 0.84811 0.91642 0.99235 1.44728 1.02665 1.49230 1.37896 1.19320 0.91676 1.16524 1.09101 0.90726 1.25492 0.96008 1.01977 1.01771 1.70025 1.02648 1.44889 1.41635 0.85213 0.76809 0.78652 0.78973 1.20530 1.21997 1.20863 1.21683 0.94059 0.92905 0.91148 0.92551 0.91120 0.91163 0.91193 0.88611 0.87738 0.87633 0.91471 0.91408 0.78761 0.89704 0.89158 0.87124 0.89125 0.89094 0.89475 0.89747 0.91474 0.91704 0.94937 0.94365 0.95598 0.95812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 9.06 71.98 0.65 -3.75 16 2 C 0.10 2.89 4.97 86.38 0.43 3.32 16 3 N -0.59 -18.28 2.45 -791.27 -1.94 -20.22 16 4 C 0.51 14.80 7.66 87.66 0.67 15.47 16 5 O -0.58 -20.71 15.37 -3.03 -0.05 -20.75 16 6 C -0.12 -2.47 4.35 29.85 0.13 -2.34 16 7 C -0.01 -0.22 4.54 29.85 0.14 -0.08 16 8 C -0.25 -4.99 5.35 -20.14 -0.11 -5.10 16 9 C 0.05 0.98 11.96 85.24 1.02 2.00 16 10 N -0.34 -7.76 12.58 -57.02 -0.72 -8.48 16 11 N -0.38 -6.91 4.01 -356.03 -1.43 -8.33 16 12 C 0.09 0.84 11.27 127.77 1.44 2.28 16 13 C 0.09 1.52 6.93 41.41 0.29 1.81 16 14 C -0.09 -1.01 9.80 71.24 0.70 -0.32 16 15 C 0.14 5.00 3.58 46.17 0.17 5.17 16 16 H 0.10 3.59 7.01 -2.39 -0.02 3.58 16 17 C -0.14 -5.37 6.09 31.99 0.19 -5.17 16 18 C 0.15 6.75 4.64 86.86 0.40 7.15 16 19 N -0.62 -30.67 2.97 -691.97 -2.06 -32.73 16 20 C -0.24 -12.95 10.27 84.03 0.86 -12.09 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 23 N -0.94 -53.84 10.09 21.65 0.22 -53.62 16 24 Si 0.97 44.66 29.55 68.60 2.03 46.68 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 28 C 0.13 5.39 6.25 86.73 0.54 5.94 16 29 H 0.06 1.72 4.34 -2.39 -0.01 1.70 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.50 6.94 -2.38 -0.02 1.48 16 32 H 0.07 2.62 5.18 -2.39 -0.01 2.60 16 33 H 0.10 2.15 6.48 -2.39 -0.02 2.14 16 34 H 0.10 1.82 6.87 -2.38 -0.02 1.80 16 35 H 0.11 1.94 6.94 -2.39 -0.02 1.93 16 36 H 0.07 1.45 7.97 -2.39 -0.02 1.43 16 37 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 0.44 7.05 -2.39 -0.02 0.43 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.59 7.08 -2.39 -0.02 0.57 16 44 H 0.09 0.99 7.51 -2.39 -0.02 0.97 16 45 H 0.08 2.81 6.45 -2.39 -0.02 2.79 16 46 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.06 3.52 5.87 -2.39 -0.01 3.50 16 48 H 0.03 1.50 4.04 -2.38 -0.01 1.49 16 49 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 50 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 Total: -1.00 -70.97 389.50 4.98 -65.98 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.93 Total: 19.99 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.99 Total: 11.48 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -5.92 Total: -123.38 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.97 4.98 -65.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267786621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.780 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds