Wall clock time and date at job start Sat Apr 11 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03675 * 2 1 4 4 C 1.35323 * 107.74537 * 179.97438 * 3 2 1 5 5 C 1.39866 * 107.92159 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.90092 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47585 * 124.99582 * 6 5 4 8 8 C 1.50705 * 109.47097 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99992 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99514 * 179.97438 * 8 7 6 11 11 C 1.46917 * 120.63576 * 359.72215 * 10 8 7 12 12 C 1.52769 * 109.01111 * 233.58557 * 11 10 8 13 13 C 1.53039 * 109.37926 * 305.58506 * 12 11 10 14 14 C 1.53040 * 109.53600 * 61.23975 * 13 12 11 15 15 H 1.09002 * 109.49853 * 58.58627 * 14 13 12 16 16 C 1.53011 * 109.49544 * 178.67983 * 14 13 12 17 17 C 1.52998 * 109.46797 * 184.83809 * 16 14 13 18 18 N 1.46501 * 109.46843 * 179.97438 * 17 16 14 19 19 C 1.36938 * 119.99889 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99638 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47221 * 89.99812 * 23 21 19 25 25 H 1.48505 * 109.47082 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47172 * 329.99937 * 23 21 19 27 27 C 1.46924 * 120.62788 * 180.02562 * 10 8 7 28 28 N 1.30841 * 108.19911 * 359.73793 * 5 4 3 29 29 H 1.09002 * 109.47391 * 89.99464 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99520 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99647 * 1 2 3 32 32 H 1.08004 * 126.13144 * 0.02562 * 3 2 1 33 33 H 1.07998 * 126.03711 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46891 * 244.99603 * 6 5 4 35 35 H 1.09007 * 109.47042 * 4.99074 * 6 5 4 36 36 H 1.09001 * 109.47023 * 299.99940 * 7 6 5 37 37 H 1.08997 * 109.47198 * 59.99810 * 7 6 5 38 38 H 1.09004 * 109.58514 * 353.41673 * 11 10 8 39 39 H 1.09005 * 109.58934 * 113.84217 * 11 10 8 40 40 H 1.09000 * 109.56200 * 185.54977 * 12 11 10 41 41 H 1.08994 * 109.36181 * 65.49838 * 12 11 10 42 42 H 1.08993 * 109.46188 * 301.21917 * 13 12 11 43 43 H 1.09002 * 109.44917 * 181.25202 * 13 12 11 44 44 H 1.08996 * 109.46970 * 304.83863 * 16 14 13 45 45 H 1.08998 * 109.46850 * 64.83923 * 16 14 13 46 46 H 1.08996 * 109.47404 * 299.99787 * 17 16 14 47 47 H 1.08998 * 109.47328 * 60.00406 * 17 16 14 48 48 H 0.97001 * 120.00069 * 0.02562 * 18 17 16 49 49 H 0.96995 * 119.99808 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.58991 * 246.15693 * 27 10 8 51 51 H 1.08997 * 109.58826 * 6.58386 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 3.5347 -0.7321 0.0003 6 6 4.7496 -1.6236 0.0014 7 6 4.6704 -2.5926 1.1827 8 6 5.8851 -3.4845 1.1833 9 8 6.7312 -3.3573 0.3237 10 7 6.0317 -4.4227 2.1397 11 6 5.0190 -4.5840 3.1917 12 6 5.7025 -4.5106 4.5560 13 6 6.8362 -5.5371 4.6118 14 6 7.8722 -5.2146 3.5325 15 1 8.2591 -4.2076 3.6888 16 6 9.0214 -6.2218 3.6105 17 6 10.1129 -5.8284 2.6131 18 7 11.2135 -6.7924 2.6883 19 6 12.3100 -6.6439 1.8816 20 1 12.3636 -5.8160 1.1902 21 6 13.3526 -7.5577 1.9525 22 7 13.2870 -8.5670 2.7947 23 14 14.8486 -7.3548 0.8525 24 1 15.8627 -6.5199 1.5452 25 1 15.4272 -8.6892 0.5526 26 1 14.4454 -6.6940 -0.4147 27 6 7.2107 -5.2994 2.1538 28 7 2.2891 -1.1327 0.0053 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 1.9281 2.1194 0.0004 33 1 4.4211 1.2963 0.0011 34 1 4.7864 -2.1886 -0.9301 35 1 5.6482 -1.0132 0.0917 36 1 4.6336 -2.0276 2.1142 37 1 3.7719 -3.2030 1.0923 38 1 4.2792 -3.7874 3.1119 39 1 4.5298 -5.5520 3.0828 40 1 4.9768 -4.7270 5.3399 41 1 6.1098 -3.5103 4.7027 42 1 6.4317 -6.5345 4.4404 43 1 7.3104 -5.5011 5.5926 44 1 9.4345 -6.2241 4.6191 45 1 8.6492 -7.2172 3.3680 46 1 9.6997 -5.8261 1.6045 47 1 10.4851 -4.8330 2.8557 48 1 11.1651 -7.5363 3.3090 49 1 14.0157 -9.2053 2.8444 50 1 6.9044 -6.3270 1.9583 51 1 7.9167 -4.9747 1.3894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269737484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:13:22 Heat of formation + Delta-G solvation = 36.744440 kcal Electronic energy + Delta-G solvation = -28150.188741 eV Core-core repulsion = 24278.880122 eV Total energy + Delta-G solvation = -3871.308619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50381 -40.28146 -37.88768 -35.29253 -34.86025 -33.47189 -32.19900 -32.10677 -30.60881 -30.27612 -27.93108 -27.13408 -25.67993 -24.28028 -23.69797 -22.52371 -21.49607 -20.84221 -20.21115 -19.77718 -18.90600 -17.55299 -17.00985 -16.81693 -16.09252 -15.95245 -15.66002 -14.90706 -14.70006 -14.50965 -14.33758 -14.15127 -13.89660 -13.73808 -13.45286 -13.37704 -13.18376 -13.07005 -12.97462 -12.82881 -12.53834 -12.42923 -12.26075 -11.92911 -11.49908 -11.33270 -11.09386 -11.04781 -10.97252 -10.80163 -10.78861 -10.52892 -10.38256 -10.18378 -9.88026 -9.77303 -9.57664 -9.50230 -8.89152 -8.77703 -8.62710 -6.82516 -5.68429 -2.96286 1.53747 2.15534 2.45480 2.63368 2.97660 3.50195 3.55010 3.57450 4.08617 4.29947 4.45146 4.56059 4.66956 4.68536 4.72575 4.76797 4.79902 4.87051 4.92244 4.94080 5.03677 5.18490 5.22246 5.30222 5.40767 5.45833 5.50211 5.62172 5.63127 5.65815 5.69366 5.75822 5.84074 5.85918 5.86961 5.94963 6.05798 6.10181 6.27868 6.33547 6.36069 6.40686 6.50506 6.59454 6.64764 6.96789 7.00076 7.38069 7.40472 7.79577 8.17895 8.51112 9.61931 10.20949 10.55701 11.54735 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.001915 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.803813 B =14615.261247 C =15865.387104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.051 3.949 4 C -0.267 4.267 5 C 0.078 3.922 6 C -0.023 4.023 7 C -0.131 4.131 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.115 4.115 14 C -0.095 4.095 15 H 0.073 0.927 16 C -0.118 4.118 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.114 3.886 28 N -0.295 5.295 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.067 0.933 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.974 18.265 0.949 35.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.095 4.095 4 C -0.296 4.296 5 C -0.088 4.088 6 C -0.063 4.063 7 C -0.171 4.171 8 C 0.301 3.699 9 O -0.413 6.413 10 N -0.346 5.346 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.153 4.153 14 C -0.115 4.115 15 H 0.092 0.908 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.585 5.585 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.008 4.008 28 N -0.118 5.118 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -31.385 17.411 0.343 35.893 hybrid contribution 1.193 0.610 -0.227 1.359 sum -30.192 18.021 0.116 35.161 Atomic orbital electron populations 1.21842 0.74323 1.04437 1.03340 1.48515 1.06575 1.03867 1.57244 1.22539 0.91236 0.93444 1.02246 1.21477 0.97117 0.94481 1.16529 1.22357 0.93232 0.94095 0.99115 1.19775 0.92307 0.95284 0.98936 1.21613 0.97250 0.97732 1.00527 1.20633 0.87824 0.80390 0.81040 1.90733 1.43841 1.69670 1.37095 1.48165 1.23145 1.35629 1.27637 1.21666 0.90501 1.02300 0.87219 1.21852 0.98550 1.00544 0.96384 1.21592 0.95715 0.98736 0.99262 1.21451 0.95307 1.00607 0.94153 0.90839 1.21728 0.94929 0.98231 1.00767 1.20714 0.88108 0.93138 0.95741 1.42375 1.17721 1.30216 1.47487 1.19276 0.95197 1.08054 1.14181 0.91172 1.24736 0.98841 0.97717 0.99934 1.69664 1.33183 1.15980 1.39661 0.86181 0.83147 0.76705 0.80166 1.21787 1.21814 1.20729 1.21808 0.86908 0.93484 0.98624 1.77312 1.01321 1.07783 1.25366 0.90818 0.89554 0.89292 0.80983 0.83367 0.89274 0.88955 0.88963 0.88517 0.89929 0.91308 0.90813 0.91514 0.91690 0.91468 0.91602 0.91814 0.96118 0.96531 0.78388 0.93634 0.91471 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.47 59.85 0.69 1.06 16 2 N -0.38 -3.02 4.01 -68.16 -0.27 -3.29 16 3 C 0.05 0.35 11.49 -17.22 -0.20 0.15 16 4 C -0.27 -2.28 10.72 -40.01 -0.43 -2.71 16 5 C 0.08 0.80 6.49 -82.41 -0.54 0.26 16 6 C -0.02 -0.24 5.08 -27.89 -0.14 -0.38 16 7 C -0.13 -1.25 4.00 -27.88 -0.11 -1.36 16 8 C 0.51 6.66 7.70 -10.98 -0.08 6.58 16 9 O -0.54 -9.17 15.39 5.56 0.09 -9.09 16 10 N -0.61 -7.28 2.98 -173.06 -0.52 -7.79 16 11 C 0.11 0.89 6.31 -3.93 -0.02 0.87 16 12 C -0.14 -1.12 6.07 -26.83 -0.16 -1.28 16 13 C -0.12 -1.20 5.17 -26.69 -0.14 -1.33 16 14 C -0.10 -1.27 2.34 -90.52 -0.21 -1.48 16 15 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.12 -1.94 4.80 -26.73 -0.13 -2.07 16 17 C 0.15 3.21 6.02 -4.04 -0.02 3.18 16 18 N -0.73 -19.59 5.60 -59.91 -0.34 -19.93 16 19 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 20 H 0.07 2.03 7.83 -52.49 -0.41 1.61 16 21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 22 N -0.94 -29.19 13.06 55.49 0.72 -28.47 16 23 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.11 1.58 5.32 -3.73 -0.02 1.56 16 28 N -0.29 -3.16 12.54 33.67 0.42 -2.74 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.09 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.10 0.86 7.95 -51.93 -0.41 0.45 16 38 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.46 6.70 -51.93 -0.35 0.11 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 49 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.10 1.69 5.72 -51.93 -0.30 1.39 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -36.93 408.87 -9.33 -46.26 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.81 Total: 5.26 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.77 Total: -4.65 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.02 Total: -62.22 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.93 -9.33 -46.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269737484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.004 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds