Wall clock time and date at job start Sat Apr 11 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34951 * 126.03865 * 2 1 4 4 C 1.35311 * 107.74712 * 179.97438 * 3 2 1 5 5 C 1.39867 * 107.92007 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.89550 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46917 * 124.99939 * 6 5 4 8 8 C 1.50695 * 109.47101 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00288 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99693 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63511 * 0.02562 * 10 8 7 12 12 C 1.53189 * 108.77771 * 126.38355 * 11 10 8 13 13 C 1.53041 * 109.30959 * 54.64108 * 12 11 10 14 14 C 1.53042 * 109.53822 * 298.63005 * 13 12 11 15 15 H 1.08998 * 109.49747 * 301.38907 * 14 13 12 16 16 C 1.52997 * 109.50143 * 181.31876 * 14 13 12 17 17 C 1.53000 * 109.47060 * 175.06808 * 16 14 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00147 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99891 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47166 * 90.00248 * 23 21 19 25 25 H 1.48501 * 109.46982 * 210.00125 * 23 21 19 26 26 H 1.48496 * 109.46958 * 329.99751 * 23 21 19 27 27 C 1.46933 * 120.60239 * 179.97438 * 10 8 7 28 28 N 1.30831 * 108.20195 * 0.25889 * 5 4 3 29 29 H 1.08996 * 109.46908 * 90.00473 * 1 2 3 30 30 H 1.08999 * 109.46736 * 210.00088 * 1 2 3 31 31 H 1.09000 * 109.46858 * 330.00443 * 1 2 3 32 32 H 1.08003 * 126.12539 * 359.96360 * 3 2 1 33 33 H 1.08007 * 126.03745 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.47090 * 5.00219 * 6 5 4 35 35 H 1.08994 * 109.47389 * 244.99758 * 6 5 4 36 36 H 1.09002 * 109.47016 * 59.99740 * 7 6 5 37 37 H 1.09007 * 109.47188 * 300.00281 * 7 6 5 38 38 H 1.09005 * 109.58749 * 6.60148 * 11 10 8 39 39 H 1.08995 * 109.70769 * 246.24828 * 11 10 8 40 40 H 1.08992 * 109.50222 * 294.68485 * 12 11 10 41 41 H 1.09004 * 109.49949 * 174.58298 * 12 11 10 42 42 H 1.09003 * 109.46111 * 178.61398 * 13 12 11 43 43 H 1.08992 * 109.45308 * 58.64646 * 13 12 11 44 44 H 1.09002 * 109.47153 * 55.06489 * 16 14 13 45 45 H 1.09001 * 109.46832 * 295.06680 * 16 14 13 46 46 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 47 47 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 48 48 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 49 49 H 0.96996 * 119.99724 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.56273 * 113.81124 * 27 10 8 51 51 H 1.09004 * 109.61650 * 353.38326 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 3.5347 -0.7321 0.0003 6 6 4.7497 -1.6236 0.0003 7 6 4.6714 -2.5925 1.1818 8 6 5.8867 -3.4836 1.1821 9 8 6.7325 -3.3559 0.3223 10 7 6.0342 -4.4217 2.1385 11 6 5.0185 -4.5881 3.1870 12 6 4.5742 -6.0538 3.2150 13 6 5.8022 -6.9518 3.3816 14 6 6.7449 -6.7555 2.1920 15 1 6.2189 -6.9942 1.2677 16 6 7.9564 -7.6776 2.3429 17 6 8.8364 -7.5717 1.0957 18 7 9.9961 -8.4551 1.2400 19 6 10.9294 -8.5285 0.2406 20 1 10.8104 -7.9354 -0.6541 21 6 12.0281 -9.3659 0.3770 22 7 12.9254 -9.4361 -0.5833 23 14 12.2337 -10.3923 1.9243 24 1 11.5678 -11.7065 1.7386 25 1 13.6795 -10.6031 2.1898 26 1 11.6175 -9.6830 3.0742 27 6 7.2135 -5.2980 2.1512 28 7 2.2892 -1.1327 -0.0060 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9282 2.1194 -0.0006 33 1 4.4211 1.2964 0.0011 34 1 5.6482 -1.0131 0.0900 35 1 4.7858 -2.1885 -0.9311 36 1 3.7728 -3.2029 1.0921 37 1 4.6352 -2.0275 2.1133 38 1 4.1613 -3.9506 2.9698 39 1 5.4406 -4.3156 4.1542 40 1 4.0684 -6.2987 2.2811 41 1 3.8924 -6.2115 4.0507 42 1 5.4866 -7.9941 3.4265 43 1 6.3213 -6.6895 4.3034 44 1 7.6173 -8.7067 2.4620 45 1 8.5318 -7.3809 3.2198 46 1 8.2610 -7.8684 0.2188 47 1 9.1756 -6.5427 0.9767 48 1 10.1030 -8.9881 2.0434 49 1 13.6929 -10.0216 -0.4881 50 1 7.8177 -5.0840 3.0328 51 1 7.8044 -5.1294 1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269737485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:13:25 Heat of formation + Delta-G solvation = 41.156010 kcal Electronic energy + Delta-G solvation = -28208.773982 eV Core-core repulsion = 24337.656663 eV Total energy + Delta-G solvation = -3871.117319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50854 -40.31285 -37.93925 -35.45805 -34.86897 -33.54163 -32.21608 -32.12439 -30.90273 -30.30005 -28.14533 -27.30214 -25.71210 -24.32328 -23.72041 -22.28805 -21.49686 -20.87168 -20.31710 -19.80893 -18.93992 -17.58194 -17.40848 -16.91773 -16.16833 -15.88369 -15.72349 -15.02182 -14.70319 -14.43744 -14.28921 -14.24228 -14.00050 -13.82615 -13.52770 -13.47525 -13.34307 -13.03517 -12.94252 -12.74179 -12.60089 -12.47125 -12.29267 -12.03205 -11.55177 -11.47702 -11.25708 -11.21261 -11.13478 -10.87226 -10.80019 -10.55260 -10.49524 -10.21355 -9.96081 -9.79121 -9.51919 -9.50593 -8.89639 -8.80917 -8.66815 -7.14305 -5.68913 -3.03936 1.53520 2.15250 2.45076 2.60781 2.94184 3.42309 3.44803 3.49696 4.08111 4.28329 4.44207 4.52430 4.65762 4.66448 4.69700 4.73260 4.76602 4.81888 4.90908 4.93276 4.95463 5.09683 5.18931 5.27902 5.38034 5.42377 5.45450 5.52027 5.58006 5.61734 5.62295 5.66727 5.74619 5.85021 5.86154 5.88091 5.93135 6.00015 6.08045 6.18851 6.27604 6.35092 6.37527 6.51390 6.64434 6.85417 6.87857 7.34613 7.40025 8.08945 8.15421 8.50329 9.29879 10.02103 10.22365 11.49735 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.001924 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.498686 B =14545.909417 C =15512.473954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.051 3.949 4 C -0.267 4.267 5 C 0.078 3.922 6 C -0.024 4.024 7 C -0.131 4.131 8 C 0.513 3.487 9 O -0.535 6.535 10 N -0.613 5.613 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.115 4.115 14 C -0.096 4.096 15 H 0.075 0.925 16 C -0.122 4.122 17 C 0.154 3.846 18 N -0.757 5.757 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.001 3.999 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.113 3.887 28 N -0.294 5.294 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.148 0.852 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.026 0.974 47 H 0.029 0.971 48 H 0.360 0.640 49 H 0.258 0.742 50 H 0.067 0.933 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.747 21.155 9.228 37.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.095 4.095 4 C -0.296 4.296 5 C -0.088 4.088 6 C -0.063 4.063 7 C -0.171 4.171 8 C 0.301 3.699 9 O -0.411 6.411 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.153 4.153 14 C -0.116 4.116 15 H 0.094 0.906 16 C -0.161 4.161 17 C 0.027 3.973 18 N -0.403 5.403 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.009 4.009 28 N -0.117 5.117 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.044 0.956 47 H 0.047 0.953 48 H 0.192 0.808 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -30.140 20.301 8.536 37.328 hybrid contribution 0.593 -0.036 1.149 1.293 sum -29.547 20.265 9.685 37.115 Atomic orbital electron populations 1.21842 0.74312 1.04427 1.03363 1.48521 1.06582 1.03863 1.57228 1.22537 0.91239 0.93445 1.02252 1.21471 0.97110 0.94475 1.16569 1.22354 0.93238 0.94087 0.99138 1.19777 0.92292 0.95275 0.98977 1.21614 0.97244 0.97709 1.00545 1.20646 0.87843 0.80649 0.80764 1.90744 1.43889 1.69706 1.36781 1.48157 1.23104 1.35266 1.28128 1.21743 0.91400 0.97359 0.91184 1.21920 0.98224 0.94593 1.02577 1.21591 0.95552 0.99710 0.98433 1.21441 0.96570 0.94553 0.98991 0.90623 1.21780 0.95512 0.99046 0.99739 1.20698 0.87870 0.94188 0.94528 1.42726 1.25294 1.51562 1.20704 1.19108 0.99633 1.21028 0.97350 0.89202 1.24687 0.97158 0.99980 0.97588 1.69712 1.13496 1.42316 1.32870 0.86517 0.76959 0.80799 0.84087 1.21175 1.21780 1.20379 1.21803 0.86757 0.88267 1.04035 1.77314 1.01325 1.07786 1.25305 0.90816 0.89295 0.89536 0.80989 0.83376 0.88964 0.89209 0.88457 0.89024 0.89871 0.91329 0.91393 0.90838 0.91510 0.91746 0.91639 0.91865 0.95626 0.95301 0.80790 0.93154 0.91506 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.47 59.85 0.69 1.06 16 2 N -0.38 -3.01 4.01 -68.16 -0.27 -3.28 16 3 C 0.05 0.35 11.49 -17.22 -0.20 0.15 16 4 C -0.27 -2.25 10.72 -40.02 -0.43 -2.68 16 5 C 0.08 0.79 6.49 -82.41 -0.53 0.25 16 6 C -0.02 -0.24 5.08 -27.88 -0.14 -0.38 16 7 C -0.13 -1.22 4.01 -27.88 -0.11 -1.33 16 8 C 0.51 6.52 7.70 -10.99 -0.08 6.44 16 9 O -0.53 -9.05 15.39 5.56 0.09 -8.96 16 10 N -0.61 -7.02 2.97 -172.79 -0.51 -7.54 16 11 C 0.11 0.85 6.34 -3.72 -0.02 0.82 16 12 C -0.13 -1.06 6.08 -26.61 -0.16 -1.23 16 13 C -0.12 -1.12 5.17 -26.69 -0.14 -1.25 16 14 C -0.10 -1.21 2.34 -90.52 -0.21 -1.42 16 15 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 16 C -0.12 -1.87 4.80 -26.73 -0.13 -2.00 16 17 C 0.15 3.14 6.02 -4.04 -0.02 3.12 16 18 N -0.76 -18.94 5.41 -59.91 -0.32 -19.27 16 19 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 20 H 0.09 2.88 8.06 -52.48 -0.42 2.45 16 21 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 22 N -0.94 -30.40 13.97 55.49 0.78 -29.62 16 23 Si 0.89 22.78 27.74 -169.99 -4.71 18.07 16 24 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.28 -6.69 6.52 56.52 0.37 -6.33 16 27 C 0.11 1.51 5.32 -3.73 -0.02 1.49 16 28 N -0.29 -3.15 12.55 33.67 0.42 -2.73 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.10 0.86 7.69 -51.93 -0.40 0.46 16 37 H 0.09 0.71 7.94 -51.92 -0.41 0.30 16 38 H 0.08 0.52 5.93 -51.93 -0.31 0.22 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.03 0.61 6.70 -51.93 -0.35 0.26 16 48 H 0.36 8.66 5.53 -40.82 -0.23 8.44 16 49 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.10 1.65 5.72 -51.93 -0.30 1.36 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -37.87 405.80 -8.97 -46.84 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.76 Total: 4.74 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.77 Total: -4.36 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.09 Total: -62.44 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.07 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.87 -8.97 -46.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269737485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.991 kcal (2) G-P(sol) polarization free energy of solvation -37.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds