Wall clock time and date at job start Sat Apr 11 2020 04:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.46946 * 2 1 4 4 C 1.36930 * 119.99577 * 275.30918 * 3 2 1 5 5 H 1.08000 * 120.00627 * 37.58293 * 4 3 2 6 6 C 1.38815 * 120.00110 * 217.57848 * 4 3 2 7 7 N 1.31622 * 119.99658 * 21.42269 * 6 4 3 8 8 Si 1.86803 * 120.00388 * 201.43092 * 6 4 3 9 9 H 1.48502 * 109.47134 * 89.99542 * 8 6 4 10 10 H 1.48498 * 109.47021 * 209.99716 * 8 6 4 11 11 H 1.48495 * 109.46831 * 329.99503 * 8 6 4 12 12 C 1.46500 * 119.99798 * 95.30782 * 3 2 1 13 13 C 1.52997 * 109.46913 * 269.99627 * 12 3 2 14 14 N 1.46500 * 109.46712 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99835 * 180.02562 * 14 13 12 16 16 O 1.21603 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.47436 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.41289 * 126.41243 * 359.97438 * 17 15 14 19 19 N 1.30448 * 108.02444 * 179.75897 * 18 17 15 20 20 N 1.39939 * 108.89171 * 0.40553 * 19 18 17 21 21 C 1.46501 * 125.75331 * 179.84241 * 20 19 18 22 22 C 1.53005 * 109.47023 * 94.69244 * 21 20 19 23 23 C 1.52999 * 109.47404 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.46975 * 300.00528 * 23 22 21 25 25 C 1.52995 * 109.47204 * 60.00008 * 24 23 22 26 26 C 1.52996 * 109.47651 * 214.69417 * 21 20 19 27 27 C 1.34256 * 108.49262 * 359.58754 * 20 19 18 28 28 H 1.08998 * 109.47331 * 299.99967 * 1 2 3 29 29 H 1.09003 * 109.47171 * 60.00344 * 1 2 3 30 30 H 1.09005 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47331 * 240.00033 * 2 1 3 32 32 H 1.09003 * 109.47171 * 119.99656 * 2 1 3 33 33 H 0.96996 * 120.00357 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46578 * 150.00158 * 12 3 2 35 35 H 1.08990 * 109.47240 * 30.00391 * 12 3 2 36 36 H 1.09002 * 109.47066 * 60.00829 * 13 12 3 37 37 H 1.08995 * 109.47453 * 300.00073 * 13 12 3 38 38 H 0.96997 * 120.00311 * 359.97438 * 14 13 12 39 39 H 1.07998 * 125.99002 * 0.02562 * 18 17 15 40 40 H 1.09008 * 109.47153 * 334.70125 * 21 20 19 41 41 H 1.09008 * 109.46436 * 60.00442 * 22 21 20 42 42 H 1.09000 * 109.47263 * 300.00424 * 22 21 20 43 43 H 1.08998 * 109.46738 * 60.00006 * 23 22 21 44 44 H 1.09001 * 109.47053 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47271 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.46818 * 299.99877 * 24 23 22 47 47 H 1.08998 * 109.47705 * 59.99790 * 25 24 23 48 48 H 1.08998 * 109.47380 * 180.02562 * 25 24 23 49 49 H 1.09008 * 109.46570 * 60.00072 * 26 21 20 50 50 H 1.08998 * 109.47398 * 300.00572 * 26 21 20 51 51 H 1.08005 * 126.28763 * 180.22179 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0633 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3025 2.7982 -0.6491 8 14 3.0992 4.2796 -2.6586 9 1 2.5374 5.5070 -2.0396 10 1 4.4548 4.5697 -3.1910 11 1 2.2166 3.8357 -3.7672 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7383 1.8364 14 7 1.4974 3.3903 3.0994 15 6 0.5648 4.0770 3.7887 16 8 -0.5712 4.1559 3.3620 17 6 0.9219 4.7327 5.0601 18 6 2.1924 4.7282 5.6782 19 7 2.1071 5.4196 6.7810 20 7 0.7951 5.8848 6.9239 21 6 0.2911 6.6975 8.0338 22 6 0.3544 8.1777 7.6519 23 6 -0.1713 9.0265 8.8112 24 6 -1.6207 8.6386 9.1110 25 6 -1.6839 7.1585 9.4930 26 6 -1.1583 6.3095 8.3331 27 6 0.0774 5.4655 5.8696 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0487 3.4032 -0.7830 34 1 3.1615 2.7642 1.0859 35 1 2.7254 1.2835 1.9721 36 1 0.3540 2.0069 2.0138 37 1 0.7902 3.4877 1.1276 38 1 2.4034 3.3271 3.4400 39 1 3.0798 4.2415 5.3013 40 1 0.9038 6.5241 8.9186 41 1 -0.2583 8.3511 6.7671 42 1 1.3870 8.4542 7.4387 43 1 0.4416 8.8530 9.6956 44 1 -0.1267 10.0810 8.5389 45 1 -1.9954 9.2436 9.9366 46 1 -2.2336 8.8121 8.2265 47 1 -1.0709 6.9849 10.3775 48 1 -2.7164 6.8819 9.7062 49 1 -1.2033 5.2549 8.6052 50 1 -1.7709 6.4828 7.4484 51 1 -0.9685 5.6648 5.6883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663443268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:58 Heat of formation + Delta-G solvation = 35.982238 kcal Electronic energy + Delta-G solvation = -28619.283928 eV Core-core repulsion = 24747.942258 eV Total energy + Delta-G solvation = -3871.341671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.56502 -39.07793 -38.39979 -36.21879 -33.99664 -33.35726 -31.84832 -31.41829 -30.44903 -29.74112 -29.00248 -27.35123 -24.50508 -23.73576 -23.26954 -22.54027 -21.51650 -20.94435 -20.29793 -20.04293 -19.54649 -18.02143 -16.63491 -16.16387 -15.57442 -15.31774 -15.15718 -15.01452 -14.96518 -14.67561 -14.53774 -14.28668 -13.73909 -13.67128 -13.43514 -13.19549 -12.90798 -12.86969 -12.72209 -12.50748 -12.34378 -11.97004 -11.87212 -11.72051 -11.47713 -11.20532 -11.14688 -11.08518 -10.94461 -10.76708 -10.74926 -10.58327 -10.46154 -10.04231 -9.81198 -9.77828 -9.63792 -9.42998 -8.76104 -8.49698 -8.29054 -6.58950 -5.79961 -3.38807 1.55379 2.14045 2.22990 3.38358 3.45790 3.47733 3.73467 3.80669 3.99197 4.12516 4.30156 4.44942 4.50120 4.55567 4.63565 4.72905 4.82737 4.85915 4.89302 5.03451 5.18940 5.25975 5.31865 5.36160 5.46720 5.49075 5.53910 5.55600 5.57781 5.65595 5.72590 5.77850 5.85133 6.04683 6.18633 6.23520 6.37718 6.42527 6.50049 6.56727 6.73731 6.74333 6.94994 7.00127 7.10642 7.20885 7.48598 7.60379 7.83794 8.09233 8.51761 8.75348 9.18373 9.80248 10.38424 11.19936 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.002237 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.656791 B =12514.028826 C =13175.386679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.137 3.863 13 C 0.100 3.900 14 N -0.716 5.716 15 C 0.587 3.413 16 O -0.560 6.560 17 C -0.285 4.285 18 C 0.081 3.919 19 N -0.300 5.300 20 N -0.359 5.359 21 C 0.162 3.838 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.133 4.133 27 C 0.122 3.878 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.395 0.605 39 H 0.191 0.809 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 9.121 22.343 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.389 4.389 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.010 3.990 13 C -0.025 4.025 14 N -0.365 5.365 15 C 0.373 3.627 16 O -0.440 6.440 17 C -0.300 4.300 18 C -0.107 4.107 19 N -0.119 5.119 20 N -0.138 5.138 21 C 0.060 3.940 22 C -0.170 4.170 23 C -0.153 4.153 24 C -0.163 4.163 25 C -0.152 4.152 26 C -0.172 4.172 27 C -0.029 4.029 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.207 0.793 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.278 9.719 23.110 26.402 hybrid contribution -0.020 0.454 -1.257 1.336 sum -8.298 10.173 21.854 25.494 Atomic orbital electron populations 1.22392 0.99941 0.99035 1.01426 1.20876 0.91757 0.87009 0.98857 1.43611 1.76057 1.08274 1.02109 1.19025 1.04688 1.21209 0.93974 0.92092 1.25185 0.94175 1.01221 0.98158 1.69993 1.03170 1.37226 1.42564 0.86389 0.76883 0.82657 0.81467 1.21217 1.21744 1.20194 1.21061 0.94643 0.96949 0.86382 1.22422 1.00945 0.96458 0.82689 1.45894 1.12898 1.53273 1.24465 1.17262 0.84882 0.78020 0.82522 1.90738 1.20490 1.62499 1.70224 1.20428 0.94747 1.13488 1.01320 1.24118 0.97896 0.96604 0.92034 1.77148 0.96584 1.17507 1.20692 1.48695 1.07231 1.39970 1.17875 1.21408 0.95593 0.89593 0.87374 1.22007 1.02798 0.92740 0.99504 1.21505 0.96308 0.99588 0.97941 1.21620 0.96776 0.95982 1.01908 1.21492 1.01701 0.94658 0.97318 1.21993 0.93759 1.01075 1.00355 1.22830 0.98569 0.94470 0.86999 0.93614 0.93127 0.94510 0.93627 0.94731 0.93541 0.88403 0.95303 0.93038 0.91819 0.77124 0.79255 0.87756 0.90990 0.90758 0.91461 0.91079 0.91414 0.91531 0.91403 0.90875 0.90587 0.90545 0.80017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -14.19 2.43 -173.24 -0.42 -14.62 16 4 C -0.26 -7.01 9.45 -15.06 -0.14 -7.15 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.88 11.47 55.49 0.64 -24.25 16 8 Si 0.90 21.62 29.61 -169.99 -5.03 16.59 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 13 C 0.10 2.08 6.00 -4.04 -0.02 2.06 16 14 N -0.72 -12.54 5.55 -61.38 -0.34 -12.88 16 15 C 0.59 10.52 7.81 -12.51 -0.10 10.43 16 16 O -0.56 -11.96 16.90 5.27 0.09 -11.87 16 17 C -0.28 -4.16 6.13 -105.07 -0.64 -4.80 16 18 C 0.08 1.05 11.50 -16.98 -0.20 0.85 16 19 N -0.30 -3.93 12.50 30.86 0.39 -3.55 16 20 N -0.36 -4.03 3.50 -54.31 -0.19 -4.22 16 21 C 0.16 1.27 3.18 -67.93 -0.22 1.05 16 22 C -0.13 -0.93 5.53 -26.73 -0.15 -1.08 16 23 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16 24 C -0.13 -0.56 5.92 -26.73 -0.16 -0.72 16 25 C -0.11 -0.52 5.92 -26.71 -0.16 -0.67 16 26 C -0.13 -0.83 4.84 -26.71 -0.13 -0.95 16 27 C 0.12 1.52 10.39 -16.56 -0.17 1.35 16 28 H 0.04 0.87 6.64 -51.93 -0.34 0.52 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.10 2.46 5.52 -51.93 -0.29 2.17 16 35 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 36 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.40 5.86 7.43 -40.82 -0.30 5.56 16 39 H 0.19 1.94 7.50 -52.49 -0.39 1.54 16 40 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 50 H 0.08 0.48 7.13 -51.93 -0.37 0.11 16 51 H 0.18 1.95 7.23 -52.48 -0.38 1.57 16 LS Contribution 406.86 15.07 6.13 6.13 Total: -1.00 -32.55 406.86 -9.44 -42.00 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.70 Total: 3.55 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.00 Total: 3.11 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.07 Total: -59.51 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.55 -9.44 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663443268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.980 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds