Wall clock time and date at job start Sat Apr 11 2020 04:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.46946 * 2 1 4 4 C 1.36930 * 119.99577 * 275.30918 * 3 2 1 5 5 H 1.08000 * 120.00627 * 37.58293 * 4 3 2 6 6 C 1.38815 * 120.00110 * 217.57848 * 4 3 2 7 7 N 1.31622 * 119.99658 * 21.42269 * 6 4 3 8 8 Si 1.86803 * 120.00388 * 201.43092 * 6 4 3 9 9 H 1.48502 * 109.47134 * 89.99542 * 8 6 4 10 10 H 1.48498 * 109.47021 * 209.99716 * 8 6 4 11 11 H 1.48495 * 109.46831 * 329.99503 * 8 6 4 12 12 C 1.46500 * 119.99798 * 95.30782 * 3 2 1 13 13 C 1.52997 * 109.46913 * 269.99627 * 12 3 2 14 14 N 1.46500 * 109.46712 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99835 * 180.02562 * 14 13 12 16 16 O 1.21603 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.47436 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.41289 * 126.41243 * 359.97438 * 17 15 14 19 19 N 1.30448 * 108.02444 * 179.75897 * 18 17 15 20 20 N 1.39939 * 108.89171 * 0.40553 * 19 18 17 21 21 C 1.46501 * 125.75331 * 179.84241 * 20 19 18 22 22 C 1.53005 * 109.47023 * 94.69244 * 21 20 19 23 23 C 1.52999 * 109.47404 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.46975 * 300.00528 * 23 22 21 25 25 C 1.52995 * 109.47204 * 60.00008 * 24 23 22 26 26 C 1.52996 * 109.47651 * 214.69417 * 21 20 19 27 27 C 1.34256 * 108.49262 * 359.58754 * 20 19 18 28 28 H 1.08998 * 109.47331 * 299.99967 * 1 2 3 29 29 H 1.09003 * 109.47171 * 60.00344 * 1 2 3 30 30 H 1.09005 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47331 * 240.00033 * 2 1 3 32 32 H 1.09003 * 109.47171 * 119.99656 * 2 1 3 33 33 H 0.96996 * 120.00357 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46578 * 150.00158 * 12 3 2 35 35 H 1.08990 * 109.47240 * 30.00391 * 12 3 2 36 36 H 1.09002 * 109.47066 * 60.00829 * 13 12 3 37 37 H 1.08995 * 109.47453 * 300.00073 * 13 12 3 38 38 H 0.96997 * 120.00311 * 359.97438 * 14 13 12 39 39 H 1.07998 * 125.99002 * 0.02562 * 18 17 15 40 40 H 1.09008 * 109.47153 * 334.70125 * 21 20 19 41 41 H 1.09008 * 109.46436 * 60.00442 * 22 21 20 42 42 H 1.09000 * 109.47263 * 300.00424 * 22 21 20 43 43 H 1.08998 * 109.46738 * 60.00006 * 23 22 21 44 44 H 1.09001 * 109.47053 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47271 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.46818 * 299.99877 * 24 23 22 47 47 H 1.08998 * 109.47705 * 59.99790 * 25 24 23 48 48 H 1.08998 * 109.47380 * 180.02562 * 25 24 23 49 49 H 1.09008 * 109.46570 * 60.00072 * 26 21 20 50 50 H 1.08998 * 109.47398 * 300.00572 * 26 21 20 51 51 H 1.08005 * 126.28763 * 180.22179 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0633 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3025 2.7982 -0.6491 8 14 3.0992 4.2796 -2.6586 9 1 2.5374 5.5070 -2.0396 10 1 4.4548 4.5697 -3.1910 11 1 2.2166 3.8357 -3.7672 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7383 1.8364 14 7 1.4974 3.3903 3.0994 15 6 0.5648 4.0770 3.7887 16 8 -0.5712 4.1559 3.3620 17 6 0.9219 4.7327 5.0601 18 6 2.1924 4.7282 5.6782 19 7 2.1071 5.4196 6.7810 20 7 0.7951 5.8848 6.9239 21 6 0.2911 6.6975 8.0338 22 6 0.3544 8.1777 7.6519 23 6 -0.1713 9.0265 8.8112 24 6 -1.6207 8.6386 9.1110 25 6 -1.6839 7.1585 9.4930 26 6 -1.1583 6.3095 8.3331 27 6 0.0774 5.4655 5.8696 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0487 3.4032 -0.7830 34 1 3.1615 2.7642 1.0859 35 1 2.7254 1.2835 1.9721 36 1 0.3540 2.0069 2.0138 37 1 0.7902 3.4877 1.1276 38 1 2.4034 3.3271 3.4400 39 1 3.0798 4.2415 5.3013 40 1 0.9038 6.5241 8.9186 41 1 -0.2583 8.3511 6.7671 42 1 1.3870 8.4542 7.4387 43 1 0.4416 8.8530 9.6956 44 1 -0.1267 10.0810 8.5389 45 1 -1.9954 9.2436 9.9366 46 1 -2.2336 8.8121 8.2265 47 1 -1.0709 6.9849 10.3775 48 1 -2.7164 6.8819 9.7062 49 1 -1.2033 5.2549 8.6052 50 1 -1.7709 6.4828 7.4484 51 1 -0.9685 5.6648 5.6883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663443268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:11:57 Heat of formation + Delta-G solvation = 17.055861 kcal Electronic energy + Delta-G solvation = -28620.104638 eV Core-core repulsion = 24747.942258 eV Total energy + Delta-G solvation = -3872.162380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54239 -40.29655 -39.21505 -38.03121 -35.57429 -34.14272 -33.80521 -31.94778 -31.66176 -31.05693 -30.06048 -28.98680 -26.24394 -24.86416 -23.82785 -23.55525 -22.97906 -22.10907 -21.66442 -21.17577 -20.39266 -19.20310 -18.43003 -17.19332 -16.96350 -16.80719 -16.49105 -16.13738 -15.87490 -15.76959 -15.49395 -15.41566 -15.07061 -14.99619 -14.72592 -14.25698 -14.07430 -13.94616 -13.81295 -13.69124 -13.44349 -13.25275 -13.20555 -12.99917 -12.63336 -12.49214 -12.35478 -12.26938 -12.17937 -12.12906 -11.99317 -11.64617 -11.57973 -11.47152 -11.43086 -11.28892 -10.91345 -10.55999 -10.52924 -10.08503 -9.62844 -8.57866 -7.83810 -5.46684 0.49735 1.13427 1.28396 1.44680 1.48911 1.55311 2.32510 2.47858 2.53503 3.23507 3.30925 3.60014 3.67005 3.72352 3.81950 3.87577 4.05095 4.09164 4.14950 4.25051 4.35533 4.35853 4.40419 4.45349 4.46720 4.50622 4.57545 4.69435 4.82175 4.84803 4.86655 4.87459 4.95812 4.99254 5.11141 5.11385 5.12911 5.26744 5.26960 5.30251 5.31452 5.37404 5.46880 5.49744 5.59227 5.69126 5.78297 5.84805 6.46417 6.48608 6.71420 7.16741 7.34333 7.85071 8.37300 9.11869 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.002237 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.656791 B =12514.028826 C =13175.386679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.268 4.268 5 H 0.052 0.948 6 C -0.030 4.030 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.290 1.290 10 H -0.289 1.289 11 H -0.271 1.271 12 C 0.145 3.855 13 C 0.123 3.877 14 N -0.709 5.709 15 C 0.588 3.412 16 O -0.599 6.599 17 C -0.311 4.311 18 C 0.085 3.915 19 N -0.317 5.317 20 N -0.349 5.349 21 C 0.155 3.845 22 C -0.128 4.128 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.109 4.109 26 C -0.130 4.130 27 C 0.133 3.867 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.409 0.591 39 H 0.211 0.789 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 9.567 24.155 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.398 4.398 5 H 0.070 0.930 6 C -0.228 4.228 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.217 1.217 10 H -0.215 1.215 11 H -0.196 1.196 12 C 0.017 3.983 13 C -0.003 4.003 14 N -0.360 5.360 15 C 0.377 3.623 16 O -0.482 6.482 17 C -0.326 4.326 18 C -0.102 4.102 19 N -0.136 5.136 20 N -0.127 5.127 21 C 0.055 3.945 22 C -0.166 4.166 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.168 4.168 27 C -0.020 4.020 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.245 0.755 39 H 0.228 0.772 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.928 10.163 24.963 28.392 hybrid contribution 0.156 0.314 -1.733 1.768 sum -8.772 10.477 23.230 26.951 Atomic orbital electron populations 1.22219 0.97994 1.00839 1.00401 1.21017 0.93176 0.85425 0.99286 1.43852 1.76380 1.09644 1.01983 1.19160 1.04273 1.21692 0.94722 0.93025 1.25763 0.94057 1.02863 1.00087 1.70081 1.03537 1.37843 1.43880 0.85540 0.76750 0.80119 0.79695 1.21729 1.21545 1.19598 1.20927 0.94365 0.96774 0.86189 1.21905 0.99913 0.95253 0.83276 1.45710 1.13786 1.53104 1.23383 1.17659 0.84116 0.77337 0.83186 1.90709 1.22086 1.63986 1.71452 1.20196 0.96266 1.15426 1.00733 1.24427 0.97977 0.96207 0.91590 1.77127 0.97657 1.17918 1.20865 1.49020 1.06535 1.39159 1.18006 1.21767 0.96686 0.89608 0.86426 1.21970 1.01934 0.92461 1.00248 1.21496 0.96815 0.99362 0.97214 1.21620 0.96162 0.96078 1.02271 1.21492 1.02270 0.94294 0.96685 1.22000 0.92443 1.01237 1.01134 1.23059 0.99066 0.93208 0.86679 0.94032 0.94680 0.91247 0.94454 0.92975 0.93728 0.90857 0.93588 0.93286 0.95310 0.75455 0.77220 0.87222 0.91652 0.92166 0.90729 0.90593 0.90162 0.91849 0.90687 0.89946 0.90947 0.90590 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 10.21 71.98 0.73 -4.91 16 2 C 0.14 5.65 6.44 86.38 0.56 6.21 16 3 N -0.60 -29.34 2.43 -702.00 -1.71 -31.05 16 4 C -0.27 -14.66 9.45 84.04 0.79 -13.86 16 5 H 0.05 2.87 7.92 -2.91 -0.02 2.85 16 6 C -0.03 -1.63 4.95 84.86 0.42 -1.21 16 7 N -0.91 -51.50 11.47 21.65 0.25 -51.25 16 8 Si 0.95 44.91 29.61 68.60 2.03 46.94 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.14 6.51 5.45 86.38 0.47 6.98 16 13 C 0.12 5.17 6.00 86.38 0.52 5.69 16 14 N -0.71 -24.87 5.55 -466.37 -2.59 -27.46 16 15 C 0.59 21.17 7.81 86.67 0.68 21.85 16 16 O -0.60 -26.00 16.90 -4.04 -0.07 -26.07 16 17 C -0.31 -8.91 6.13 -20.15 -0.12 -9.03 16 18 C 0.09 2.11 11.50 85.65 0.99 3.10 16 19 N -0.32 -7.93 12.50 -56.28 -0.70 -8.63 16 20 N -0.35 -7.45 3.50 -325.74 -1.14 -8.59 16 21 C 0.16 2.21 3.18 44.99 0.14 2.35 16 22 C -0.13 -1.65 5.53 30.60 0.17 -1.49 16 23 C -0.11 -0.90 5.92 30.60 0.18 -0.72 16 24 C -0.12 -0.82 5.92 30.59 0.18 -0.64 16 25 C -0.11 -0.73 5.92 30.61 0.18 -0.55 16 26 C -0.13 -1.38 4.84 30.61 0.15 -1.23 16 27 C 0.13 3.20 10.39 84.27 0.88 4.07 16 28 H 0.04 1.53 6.64 -2.39 -0.02 1.51 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 33 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.07 3.73 5.52 -2.39 -0.01 3.72 16 35 H 0.05 1.89 7.86 -2.39 -0.02 1.87 16 36 H 0.05 2.09 6.64 -2.39 -0.02 2.07 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 11.94 7.43 -92.71 -0.69 11.25 16 39 H 0.21 4.00 7.50 -2.91 -0.02 3.98 16 40 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.08 0.83 7.13 -2.39 -0.02 0.81 16 51 H 0.20 4.03 7.23 -2.91 -0.02 4.01 16 Total: -1.00 -70.09 406.86 3.21 -66.88 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.22 Total: 22.61 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.91 Total: 16.61 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.89 Total: -126.98 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.07 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.09 3.21 -66.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663443268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.936 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds