Wall clock time and date at job start Sat Apr 11 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99997 * 2 1 4 4 H 1.07995 * 119.99855 * 202.37320 * 3 2 1 5 5 C 1.38817 * 120.00136 * 22.37332 * 3 2 1 6 6 N 1.31618 * 119.99811 * 11.33728 * 5 3 2 7 7 Si 1.86797 * 120.00126 * 191.33447 * 5 3 2 8 8 H 1.48496 * 109.47059 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46949 * 120.00002 * 7 5 3 10 10 H 1.48501 * 109.47236 * 239.99974 * 7 5 3 11 11 C 1.46505 * 119.99835 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.46827 * 269.99939 * 11 2 1 13 13 C 1.38269 * 119.97998 * 270.02281 * 12 11 2 14 14 C 1.38216 * 120.05531 * 179.97438 * 13 12 11 15 15 C 1.38275 * 120.01879 * 0.02562 * 14 13 12 16 16 I 2.09505 * 120.01795 * 180.27698 * 15 14 13 17 17 C 1.38494 * 119.96511 * 359.97438 * 15 14 13 18 18 F 1.35095 * 120.02668 * 180.02562 * 17 15 14 19 19 C 1.38191 * 119.98154 * 90.00376 * 12 11 2 20 20 H 1.08997 * 109.47175 * 274.20348 * 1 2 3 21 21 H 1.08996 * 109.46929 * 34.20538 * 1 2 3 22 22 H 1.08999 * 109.47059 * 154.20257 * 1 2 3 23 23 H 0.96997 * 120.00535 * 179.97438 * 6 5 3 24 24 H 1.08998 * 109.47079 * 150.00043 * 11 2 1 25 25 H 1.09002 * 109.47040 * 29.99796 * 11 2 1 26 26 H 1.07995 * 119.97456 * 0.02562 * 13 12 11 27 27 H 1.07997 * 119.99189 * 180.02562 * 14 13 12 28 28 H 1.07997 * 120.00611 * 0.04080 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3560 5 6 1.5340 2.3428 0.4576 6 7 0.3846 2.2688 1.0944 7 14 2.3369 4.0047 0.1696 8 1 3.6138 3.8169 -0.5648 9 1 1.4269 4.8618 -0.6319 10 1 2.6080 4.6566 1.4761 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4201 13 6 3.6008 -1.3049 2.0718 14 6 3.8325 -1.7031 3.3749 15 6 2.9121 -2.5020 4.0281 16 53 3.2591 -3.0984 6.0063 17 6 1.7578 -2.9026 3.3761 18 9 0.8576 -3.6828 4.0133 19 6 1.5271 -2.5025 2.0708 20 1 -0.3633 0.0753 1.0249 21 1 -0.3633 0.8499 -0.5777 22 1 -0.3633 -0.9252 -0.4472 23 1 -0.0455 3.0771 1.4146 24 1 3.1499 -1.1382 -0.5143 25 1 1.6084 -2.0282 -0.5147 26 1 4.3199 -0.6806 1.5625 27 1 4.7325 -1.3901 3.8832 28 1 0.6276 -2.8145 1.5611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232492451.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:05 Heat of formation + Delta-G solvation = 16.289510 kcal Electronic energy + Delta-G solvation = -14982.070045 eV Core-core repulsion = 12193.592429 eV Total energy + Delta-G solvation = -2788.477616 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.988 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.67352 -38.86114 -35.66387 -32.66607 -30.92960 -30.23000 -28.33526 -26.05754 -25.19616 -22.48348 -21.85321 -20.41588 -16.94520 -16.77468 -16.00345 -15.38907 -15.30414 -14.89365 -13.88028 -13.72203 -13.38019 -13.15631 -12.73057 -12.05002 -11.78542 -11.52015 -11.15488 -11.00088 -10.76063 -10.67881 -10.36324 -10.12514 -10.08785 -9.92789 -9.74663 -8.70091 -8.55440 -8.25023 -6.94627 -5.87642 -3.31358 1.27897 1.36921 1.55586 3.29934 3.37191 3.39114 3.87881 4.39985 4.46402 5.00939 5.25145 5.40884 5.52015 5.55397 5.68980 5.95415 6.06699 6.24038 6.41012 6.45714 6.54096 6.65115 7.03133 7.19305 7.26812 7.61307 7.68814 8.23247 9.06964 9.68473 10.16751 11.16364 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.004229 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.246006 B = 6619.195798 C = 7128.949330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.258 4.258 4 H 0.073 0.927 5 C 0.006 3.994 6 N -0.899 5.899 7 Si 0.907 3.093 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.175 3.825 12 C -0.034 4.034 13 C -0.110 4.110 14 C -0.062 4.062 15 C -0.157 4.157 16 I -0.049 7.049 17 C 0.124 3.876 18 F -0.136 7.136 19 C -0.145 4.145 20 H 0.030 0.970 21 H 0.050 0.950 22 H 0.000 1.000 23 H 0.255 0.745 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -12.314 7.795 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.387 4.387 4 H 0.091 0.909 5 C -0.194 4.194 6 N -0.542 5.542 7 Si 0.736 3.264 8 H -0.201 1.201 9 H -0.214 1.214 10 H -0.215 1.215 11 C 0.048 3.952 12 C -0.039 4.039 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.299 4.299 16 I 0.100 6.900 17 C 0.102 3.898 18 F -0.115 7.115 19 C -0.167 4.167 20 H 0.048 0.952 21 H 0.068 0.932 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.244 -12.565 9.196 16.776 hybrid contribution -0.133 1.326 -0.779 1.544 sum 6.111 -11.239 8.417 15.314 Atomic orbital electron populations 1.20892 0.81969 0.96014 0.99595 1.44239 1.02160 1.00225 1.83923 1.19314 0.98541 0.84870 1.35976 0.90893 1.25121 0.97579 0.98856 0.97845 1.70077 1.17545 1.27410 1.39176 0.86150 0.78772 0.83887 0.77555 1.20107 1.21447 1.21549 1.20126 0.97266 0.88963 0.88864 1.21283 0.91287 0.89983 1.01364 1.21089 0.98225 0.99790 0.93950 1.20859 0.97652 0.95054 0.94664 1.24036 0.99209 1.09513 0.97167 1.96632 1.96245 1.90672 1.06411 1.17381 0.87223 0.93785 0.91423 1.91494 1.66145 1.72156 1.81681 1.20953 1.01525 1.01567 0.92630 0.95159 0.93159 0.98138 0.93488 0.92044 0.92818 0.84976 0.85367 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 9.01 59.85 0.54 4.30 15 2 N -0.59 -13.80 2.91 -182.50 -0.53 -14.33 15 3 C -0.26 -6.64 9.67 -15.06 -0.15 -6.78 15 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 15 5 C 0.01 0.15 5.13 -17.43 -0.09 0.06 15 6 N -0.90 -25.36 10.59 55.49 0.59 -24.77 15 7 Si 0.91 21.01 29.57 -169.99 -5.03 15.99 15 8 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 11 C 0.18 3.29 5.83 -5.19 -0.03 3.26 15 12 C -0.03 -0.62 5.46 -104.63 -0.57 -1.19 15 13 C -0.11 -1.88 9.70 -39.58 -0.38 -2.26 15 14 C -0.06 -0.98 9.76 -39.58 -0.39 -1.36 15 15 C -0.16 -2.57 6.21 -39.47 -0.25 -2.82 15 16 I -0.05 -0.67 39.76 -73.02 -2.90 -3.58 15 17 C 0.12 2.16 7.27 -39.40 -0.29 1.87 15 18 F -0.14 -2.33 16.62 2.25 0.04 -2.30 15 19 C -0.15 -2.56 9.68 -39.52 -0.38 -2.94 15 20 H 0.03 0.78 7.42 -51.93 -0.39 0.40 15 21 H 0.05 1.27 7.19 -51.93 -0.37 0.90 15 22 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 15 23 H 0.25 7.00 8.31 -40.82 -0.34 6.66 15 24 H 0.06 1.08 7.97 -51.93 -0.41 0.67 15 25 H 0.05 0.90 7.81 -51.93 -0.41 0.50 15 26 H 0.13 2.14 8.06 -52.49 -0.42 1.72 15 27 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 28 H 0.13 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 277.04 15.07 4.17 4.17 Total: -1.00 -27.83 277.04 -8.44 -36.27 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -2.80 Total: -3.59 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.98 Total: -7.86 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.06 Total: -39.10 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 53 Polarization: -0.67 SS G_CDS: -2.90 Total: -3.58 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.83 -8.44 -36.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232492451.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.562 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds