Wall clock time and date at job start Sat Apr 11 2020 04:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47628 * 174.99480 * 3 2 1 5 5 H 1.48506 * 109.46866 * 294.99414 * 3 2 1 6 6 H 1.48499 * 109.47070 * 54.99312 * 3 2 1 7 7 C 1.38818 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99922 * 185.26065 * 7 2 1 9 9 N 1.36932 * 119.99994 * 5.26515 * 7 2 1 10 10 C 1.46498 * 120.00219 * 174.95210 * 9 7 2 11 11 C 1.52996 * 115.55037 * 301.17699 * 10 9 7 12 12 N 1.46495 * 109.47198 * 324.05046 * 11 10 9 13 13 C 1.34774 * 120.00487 * 183.96286 * 12 11 10 14 14 O 1.21726 * 119.99795 * 4.66264 * 13 12 11 15 15 C 1.46429 * 120.00345 * 184.66994 * 13 12 11 16 16 S 1.76194 * 126.16655 * 6.10937 * 15 13 12 17 17 C 1.70916 * 90.40348 * 179.97438 * 16 15 13 18 18 Cl 1.73603 * 124.69645 * 180.02562 * 17 16 15 19 19 N 1.29510 * 110.60559 * 359.97438 * 17 16 15 20 20 C 1.31048 * 117.41810 * 359.74734 * 19 17 16 21 21 Cl 1.73598 * 123.04863 * 180.29252 * 20 19 17 22 22 C 1.53003 * 117.50051 * 155.49751 * 10 9 7 23 23 C 1.53003 * 117.49557 * 86.84323 * 10 9 7 24 24 H 0.97005 * 119.99805 * 359.97438 * 1 2 3 25 25 H 0.97007 * 119.99920 * 354.68324 * 9 7 2 26 26 H 1.08994 * 109.47205 * 84.06188 * 11 10 9 27 27 H 1.09008 * 109.46630 * 204.05615 * 11 10 9 28 28 H 0.97003 * 119.99462 * 3.97206 * 12 11 10 29 29 H 1.09003 * 117.49677 * 0.02562 * 22 10 9 30 30 H 1.08999 * 117.49898 * 145.02180 * 22 10 9 31 31 H 1.09004 * 117.50166 * 214.98256 * 23 10 9 32 32 H 1.09007 * 117.49938 * 359.97265 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7056 1.3490 0.1221 5 1 1.9855 2.3421 -1.2690 6 1 1.8023 2.4480 1.1468 7 6 2.0102 -1.2022 0.0005 8 1 3.0868 -1.2042 0.0863 9 7 1.3299 -2.3856 -0.1078 10 6 2.0669 -3.6468 -0.2186 11 6 3.0201 -3.7515 -1.4107 12 7 2.4357 -3.0645 -2.5651 13 6 3.0646 -3.0946 -3.7567 14 8 4.0730 -3.7620 -3.8959 15 6 2.5350 -2.3244 -4.8838 16 16 1.1857 -1.1927 -4.8273 17 6 1.3681 -0.8732 -6.4964 18 17 0.3797 0.2269 -7.4057 19 7 2.3463 -1.5647 -6.9886 20 6 3.0031 -2.3489 -6.1695 21 17 4.3421 -3.3333 -6.6710 22 6 1.3533 -4.9239 0.2297 23 6 2.4826 -4.3386 1.0813 24 1 -0.4850 0.8401 0.0004 25 1 0.3598 -2.3892 -0.1072 26 1 3.9730 -3.2877 -1.1558 27 1 3.1812 -4.8014 -1.6560 28 1 1.5960 -2.5878 -2.4717 29 1 0.3353 -4.8256 0.6068 30 1 1.5632 -5.8387 -0.3245 31 1 3.4351 -4.8687 1.0870 32 1 2.2081 -3.8551 2.0189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716701708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:13:32 Heat of formation + Delta-G solvation = 46.346275 kcal Electronic energy + Delta-G solvation = -21652.741668 eV Core-core repulsion = 18021.827562 eV Total energy + Delta-G solvation = -3630.914106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 335.000 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.26177 -39.12587 -37.55685 -37.25334 -36.58775 -33.80433 -33.23897 -30.74473 -29.83060 -27.12954 -25.70379 -24.03254 -22.07642 -21.75933 -20.28881 -19.47549 -18.89170 -17.38265 -17.02492 -16.17944 -15.89521 -15.61776 -15.28055 -14.75096 -14.53101 -14.26860 -13.87208 -13.38750 -13.18279 -12.76667 -12.43091 -12.27213 -11.95011 -11.88822 -11.41108 -11.16981 -11.08935 -11.01358 -10.98862 -10.46380 -10.31912 -10.28795 -9.91193 -9.84275 -9.76645 -9.55348 -8.99714 -8.94927 -8.58999 -7.23665 -5.99728 -3.31244 -0.20983 0.35330 0.86540 1.36970 1.97727 2.14006 3.17610 3.28611 3.32147 3.38598 3.39568 4.31125 4.37022 4.45001 4.85344 5.04673 5.11676 5.21649 5.36310 5.47031 5.80704 6.06849 6.06910 6.25050 6.37116 6.50061 6.69155 6.75643 6.88061 7.58992 7.78634 8.17906 8.35155 9.30260 9.80918 10.17381 11.21208 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.004985 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.820227 B = 5615.579981 C = 7385.991229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.004 4.004 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.690 5.690 10 C 0.127 3.873 11 C 0.155 3.845 12 N -0.690 5.690 13 C 0.586 3.414 14 O -0.520 6.520 15 C -0.277 4.277 16 S 0.332 5.668 17 C 0.065 3.935 18 Cl 0.042 6.958 19 N -0.463 5.463 20 C 0.184 3.816 21 Cl 0.034 6.966 22 C -0.186 4.186 23 C -0.194 4.194 24 H 0.258 0.742 25 H 0.389 0.611 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.410 0.590 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -4.676 -10.438 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.330 5.330 10 C 0.033 3.967 11 C 0.030 3.970 12 N -0.342 5.342 13 C 0.369 3.631 14 O -0.399 6.399 15 C -0.404 4.404 16 S 0.584 5.416 17 C -0.235 4.235 18 Cl 0.069 6.931 19 N -0.181 5.181 20 C 0.018 3.982 21 Cl 0.063 6.937 22 C -0.224 4.224 23 C -0.235 4.235 24 H 0.068 0.932 25 H 0.224 0.776 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.249 0.751 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.507 -4.465 -10.446 11.371 hybrid contribution 0.441 0.879 -0.404 1.063 sum 0.947 -3.586 -10.850 11.466 Atomic orbital electron populations 1.69668 1.04982 1.25973 1.56678 1.24729 0.95455 0.97577 1.02303 0.86266 0.79238 0.84181 0.77530 1.20344 1.21443 1.21668 1.19201 0.91611 0.83330 1.43142 0.90885 1.41885 1.05306 0.99333 1.86438 1.20203 0.97078 0.86546 0.92833 1.21108 0.96216 0.95951 0.83760 1.45741 1.26524 1.53790 1.08172 1.16414 0.84094 0.81211 0.81357 1.90860 1.24427 1.41604 1.82999 1.26130 1.05618 1.09522 0.99104 1.84954 1.24423 1.31510 1.00708 1.27164 0.98522 1.00960 0.96867 1.98452 1.63790 1.57050 1.73768 1.65230 1.07080 1.08170 1.37636 1.20604 0.94502 0.95964 0.87173 1.98439 1.39155 1.64820 1.91306 1.23200 0.97882 0.96527 1.04747 1.23430 0.97822 1.04726 0.97527 0.93237 0.77581 0.91320 0.91343 0.75147 0.89042 0.89263 0.89839 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.55 13.07 55.49 0.73 -23.82 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.90 20.57 29.56 -169.99 -5.02 15.55 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.24 -5.86 9.54 -15.06 -0.14 -6.00 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.69 -14.73 4.44 -47.23 -0.21 -14.94 16 10 C 0.13 2.23 2.55 -131.82 -0.34 1.90 16 11 C 0.16 2.63 5.57 -4.05 -0.02 2.61 16 12 N -0.69 -11.89 5.34 -61.70 -0.33 -12.22 16 13 C 0.59 10.19 7.77 -12.96 -0.10 10.09 16 14 O -0.52 -9.90 15.18 5.17 0.08 -9.82 16 15 C -0.28 -4.38 6.50 -36.79 -0.24 -4.61 16 16 S 0.33 4.58 22.38 -107.50 -2.41 2.17 16 17 C 0.06 0.87 8.01 51.78 0.41 1.28 16 18 Cl 0.04 0.47 29.33 -51.86 -1.52 -1.05 16 19 N -0.46 -6.94 10.51 -9.31 -0.10 -7.04 16 20 C 0.18 2.88 7.41 -18.39 -0.14 2.74 16 21 Cl 0.03 0.51 27.40 -51.86 -1.42 -0.91 16 22 C -0.19 -2.76 10.10 -26.69 -0.27 -3.03 16 23 C -0.19 -3.09 10.18 -26.69 -0.27 -3.36 16 24 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.39 8.87 8.03 -40.82 -0.33 8.54 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.06 7.89 -51.92 -0.41 0.65 16 28 H 0.41 7.24 6.83 -40.82 -0.28 6.97 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -26.73 331.19 -9.09 -35.81 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -2.67 Total: 9.87 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.20 Total: 1.42 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.09 Total: -58.02 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -2.41 Total: 2.17 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -2.94 Total: -1.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.73 -9.09 -35.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716701708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.160 kcal (2) G-P(sol) polarization free energy of solvation -26.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds