Wall clock time and date at job start Sat Apr 11 2020 04:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46534 * 2 1 4 4 C 1.50693 * 109.47278 * 120.00177 * 2 1 3 5 5 H 1.08003 * 120.00426 * 114.41569 * 4 2 1 6 6 C 1.37886 * 119.99848 * 294.41768 * 4 2 1 7 7 N 1.31513 * 119.99744 * 359.65609 * 6 4 2 8 8 Si 1.86799 * 120.00066 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47224 * 264.73170 * 8 6 4 10 10 H 1.48500 * 109.46971 * 24.73098 * 8 6 4 11 11 H 1.48494 * 109.47212 * 144.73001 * 8 6 4 12 12 N 1.46503 * 109.47050 * 240.00133 * 2 1 3 13 13 C 1.46497 * 119.99863 * 299.99707 * 12 2 1 14 14 C 1.34779 * 119.99840 * 119.99903 * 12 2 1 15 15 O 1.21362 * 119.99958 * 5.68648 * 14 12 2 16 16 C 1.49350 * 119.99791 * 185.68506 * 14 12 2 17 17 O 1.21365 * 119.99980 * 6.19521 * 16 14 12 18 18 N 1.34782 * 119.99939 * 186.19557 * 16 14 12 19 19 C 1.39402 * 119.99730 * 184.98426 * 18 16 14 20 20 C 1.39136 * 119.93188 * 27.05277 * 19 18 16 21 21 C 1.37682 * 120.08793 * 179.72267 * 20 19 18 22 22 C 1.39794 * 119.94741 * 0.57237 * 21 20 19 23 23 C 1.43192 * 120.07042 * 179.68049 * 22 21 20 24 24 N 9.85803 * 142.61616 * 206.16256 * 12 1 2 25 25 C 1.39761 * 119.86018 * 359.70105 * 22 21 20 26 26 C 1.37811 * 119.90964 * 0.02562 * 25 22 21 27 27 Cl 1.73599 * 119.97596 * 180.02562 * 26 25 22 28 28 H 1.08996 * 109.47429 * 297.41050 * 1 2 3 29 29 H 1.09005 * 109.47144 * 57.41778 * 1 2 3 30 30 H 1.09005 * 109.47103 * 177.41292 * 1 2 3 31 31 H 0.97008 * 119.99973 * 180.27663 * 7 6 4 32 32 H 1.09003 * 109.47164 * 95.23631 * 13 12 2 33 33 H 1.09003 * 109.47082 * 215.22886 * 13 12 2 34 34 H 1.08995 * 109.47404 * 335.23032 * 13 12 2 35 35 H 0.97002 * 119.99879 * 4.98375 * 18 16 14 36 36 H 1.08000 * 119.95211 * 359.97438 * 20 19 18 37 37 H 1.07992 * 120.02690 * 180.25175 * 21 20 19 38 38 H 1.08000 * 120.04558 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5769 -1.6381 1.1339 6 6 1.7967 -0.1760 2.4795 7 7 1.1395 0.9570 2.5966 8 14 2.4188 -1.0570 4.0047 9 1 1.3365 -1.9081 4.5608 10 1 3.5820 -1.9073 3.6454 11 1 2.8325 -0.0559 5.0204 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0355 -2.0834 15 8 3.1716 1.0920 -1.8421 16 6 3.1860 -0.6973 -3.3633 17 8 2.7179 -1.7781 -3.6563 18 7 4.0604 -0.0943 -4.1931 19 6 4.3479 -0.6609 -5.4339 20 6 3.4039 -1.4644 -6.0657 21 6 3.6823 -2.0209 -7.2939 22 6 4.9196 -1.7879 -7.9013 23 6 5.2145 -2.3710 -9.1755 24 7 5.4485 -2.8335 -10.1863 25 6 5.8684 -0.9851 -7.2621 26 6 5.5815 -0.4264 -6.0355 27 17 6.7585 0.5717 -5.2403 28 1 -0.3634 0.4731 0.9122 29 1 -0.3634 0.5534 -0.8660 30 1 -0.3633 -1.0267 -0.0464 31 1 0.9772 1.3351 3.4751 32 1 0.7902 -2.1448 -2.0770 33 1 2.5009 -2.6051 -1.9039 34 1 1.4389 -2.5732 -0.4758 35 1 4.4896 0.7338 -3.9268 36 1 2.4500 -1.6485 -5.5939 37 1 2.9474 -2.6411 -7.7853 38 1 6.8251 -0.8028 -7.7289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439322607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:12:59 Heat of formation + Delta-G solvation = -2.080119 kcal Electronic energy + Delta-G solvation = -25431.490610 eV Core-core repulsion = 21493.989651 eV Total energy + Delta-G solvation = -3937.500959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28649 -39.71231 -38.25181 -37.19638 -36.58744 -35.97539 -34.89710 -32.84650 -31.44298 -30.59961 -29.66787 -26.50275 -25.55931 -25.26856 -23.66721 -23.23645 -20.98853 -19.57793 -19.44783 -18.14692 -17.43969 -16.53870 -16.41940 -16.04202 -15.70298 -15.37684 -15.12698 -14.64011 -14.49917 -14.31626 -14.17431 -13.89280 -13.39068 -13.28503 -13.21566 -12.86042 -12.62560 -12.50703 -12.17808 -11.84385 -11.76399 -11.74080 -11.39819 -11.14872 -11.05824 -10.97117 -10.85738 -10.75564 -10.42976 -10.27054 -9.41684 -9.31282 -9.02252 -8.58104 -8.55089 -7.88220 -6.19253 -4.27167 0.13950 0.67809 1.56778 1.59055 2.31108 2.34888 2.51852 3.21224 3.29072 3.31318 3.33182 3.47204 3.51649 3.75559 4.20640 4.30568 4.46596 4.54552 4.72714 4.84820 5.14297 5.19014 5.40915 5.54850 5.70055 5.79841 5.91459 6.09054 6.25024 6.43238 6.54598 6.62361 6.76753 6.86329 7.08626 7.10860 7.26547 7.54602 7.56923 7.80516 7.97642 8.21561 8.44903 8.77468 9.39254 10.87501 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.002631 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.418692 B =10640.642390 C =11231.769137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.254 3.746 3 H 0.071 0.929 4 C -0.530 4.530 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.549 5.549 13 C 0.080 3.920 14 C 0.493 3.507 15 O -0.529 6.529 16 C 0.512 3.488 17 O -0.489 6.489 18 N -0.648 5.648 19 C 0.201 3.799 20 C -0.123 4.123 21 C -0.038 4.038 22 C -0.045 4.045 23 C 0.260 3.740 24 N -0.417 5.417 25 C -0.037 4.037 26 C -0.077 4.077 27 Cl -0.046 7.046 28 H 0.088 0.912 29 H 0.015 0.985 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.428 0.572 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -3.283 -16.860 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.155 3.845 3 H 0.089 0.911 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.280 5.280 13 C -0.063 4.063 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.296 3.704 17 O -0.362 6.362 18 N -0.294 5.294 19 C 0.102 3.898 20 C -0.143 4.143 21 C -0.059 4.059 22 C -0.050 4.050 23 C -0.055 4.055 24 N -0.092 5.092 25 C -0.058 4.058 26 C -0.106 4.106 27 Cl -0.017 7.017 28 H 0.107 0.893 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.268 0.732 36 H 0.182 0.818 37 H 0.162 0.838 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.613 -3.931 -18.135 19.386 hybrid contribution 0.570 0.193 1.472 1.590 sum 6.183 -3.738 -16.663 18.162 Atomic orbital electron populations 1.22062 0.97633 0.99443 1.01056 1.19213 0.91096 0.94884 0.79331 0.91116 1.21246 1.36672 1.08844 0.90096 0.91920 1.24896 0.94828 0.94866 0.99041 1.69910 1.39920 1.18197 1.24248 0.86443 0.79126 0.79328 0.82314 1.20559 1.19799 1.21008 1.48300 1.45453 1.12415 1.21803 1.21973 1.00807 0.81581 1.01987 1.19468 0.82224 0.86790 0.84213 1.90758 1.54523 1.18682 1.76746 1.21127 0.78441 0.84939 0.85898 1.90690 1.51697 1.19362 1.74477 1.43418 1.43743 1.27801 1.14462 1.17786 0.91547 0.94948 0.85489 1.21345 1.00379 0.98256 0.94360 1.21180 0.94634 0.96506 0.93619 1.15786 0.96327 1.02953 0.89940 1.25470 0.93882 0.93527 0.92614 1.81281 1.07431 1.09138 1.11369 1.20800 0.99263 0.93721 0.92043 1.20455 0.90413 1.03032 0.96728 1.98414 1.56374 1.67525 1.79433 0.89309 0.96564 0.94662 0.92502 0.92976 0.90790 0.90208 0.73152 0.81754 0.83780 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.09 37.16 0.34 -2.84 16 2 C 0.25 6.06 2.52 -69.08 -0.17 5.88 16 3 H 0.07 1.94 6.91 -51.93 -0.36 1.58 16 4 C -0.53 -13.55 7.99 -34.44 -0.28 -13.83 16 5 H 0.06 1.58 7.23 -52.48 -0.38 1.20 16 6 C 0.07 1.74 5.31 -17.82 -0.09 1.65 16 7 N -0.89 -23.98 11.75 55.43 0.65 -23.33 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.55 -11.05 2.75 -175.81 -0.48 -11.54 16 13 C 0.08 1.34 8.10 59.85 0.48 1.82 16 14 C 0.49 9.33 7.72 -11.63 -0.09 9.24 16 15 O -0.53 -11.33 15.85 5.49 0.09 -11.24 16 16 C 0.51 7.58 7.48 -11.63 -0.09 7.50 16 17 O -0.49 -7.13 10.64 5.48 0.06 -7.07 16 18 N -0.65 -7.89 5.12 -10.25 -0.05 -7.95 16 19 C 0.20 2.06 6.39 -83.71 -0.54 1.52 16 20 C -0.12 -1.13 8.67 -39.45 -0.34 -1.47 16 21 C -0.04 -0.27 9.74 -39.20 -0.38 -0.66 16 22 C -0.05 -0.34 5.74 -106.82 -0.61 -0.95 16 23 C 0.26 2.33 15.32 -22.48 -0.34 1.99 16 24 N -0.42 -4.71 18.54 41.84 0.78 -3.94 16 25 C -0.04 -0.27 9.52 -39.17 -0.37 -0.64 16 26 C -0.08 -0.68 6.33 -39.37 -0.25 -0.93 16 27 Cl -0.05 -0.42 27.80 -51.86 -1.44 -1.86 16 28 H 0.09 2.16 6.49 -51.93 -0.34 1.83 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.03 0.72 7.59 -51.93 -0.39 0.32 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.07 1.16 5.98 -51.93 -0.31 0.85 16 34 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 35 H 0.43 5.09 7.31 -40.82 -0.30 4.80 16 36 H 0.17 1.64 5.91 -52.49 -0.31 1.33 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -28.80 348.32 -6.49 -35.29 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.58 Total: 2.89 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -2.74 Total: 8.28 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.89 Total: -46.75 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.15 Total: -18.32 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.44 Total: -1.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.80 -6.49 -35.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439322607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.213 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds