Wall clock time and date at job start Sat Apr 11 2020 04:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 116.99954 * 2 1 4 4 O 1.20828 * 120.00039 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00369 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47530 * 180.02562 * 5 3 2 7 7 C 1.37091 * 119.99905 * 95.72676 * 6 5 3 8 8 H 1.08009 * 120.00295 * 153.13857 * 7 6 5 9 9 C 1.38953 * 120.00481 * 333.41563 * 7 6 5 10 10 N 1.31415 * 119.99484 * 4.59558 * 9 7 6 11 11 Si 1.86795 * 120.00232 * 184.59202 * 9 7 6 12 12 H 1.48499 * 109.47137 * 90.00441 * 11 9 7 13 13 H 1.48505 * 109.46855 * 209.99761 * 11 9 7 14 14 H 1.48493 * 109.47380 * 329.99944 * 11 9 7 15 15 C 1.34776 * 119.99666 * 275.72596 * 6 5 3 16 16 O 1.21290 * 120.00467 * 354.59057 * 15 6 5 17 17 C 1.50707 * 119.99473 * 174.58878 * 15 6 5 18 18 H 1.09002 * 108.61496 * 28.26117 * 17 15 6 19 19 C 1.51868 * 108.65614 * 270.35067 * 17 15 6 20 20 C 1.53538 * 108.97201 * 178.61901 * 19 17 15 21 21 S 1.81622 * 107.27846 * 72.68478 * 20 19 17 22 22 C 1.76459 * 102.60919 * 313.56650 * 21 20 19 23 23 C 1.39633 * 117.71725 * 192.75754 * 22 21 20 24 24 C 1.37738 * 120.62722 * 180.72066 * 23 22 21 25 25 C 1.38342 * 119.51002 * 359.97438 * 24 23 22 26 26 C 1.37758 * 120.00929 * 359.73719 * 25 24 23 27 27 C 1.38179 * 122.30195 * 12.97733 * 22 21 20 28 28 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47391 * 299.99508 * 1 2 3 30 30 H 1.09005 * 109.47260 * 60.00167 * 1 2 3 31 31 H 1.09005 * 109.47165 * 60.00072 * 5 3 2 32 32 H 1.09006 * 109.47053 * 300.00388 * 5 3 2 33 33 H 0.96997 * 119.99707 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.56088 * 298.46880 * 19 17 15 35 35 H 1.09007 * 109.55695 * 58.77616 * 19 17 15 36 36 H 1.08995 * 109.88757 * 313.24482 * 20 19 17 37 37 H 1.08998 * 109.95989 * 192.16335 * 20 19 17 38 38 H 1.07999 * 119.68616 * 0.74574 * 23 22 21 39 39 H 1.07998 * 120.24230 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.99686 * 179.74081 * 25 24 23 41 41 H 1.08002 * 119.46821 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2901 3.3028 1.1818 8 1 4.9796 4.1340 1.1901 9 6 3.7201 2.8611 2.3696 10 7 2.9569 1.7913 2.3741 11 14 4.0388 3.7879 3.9598 12 1 3.0001 4.8338 4.1398 13 1 3.9910 2.8410 5.1027 14 1 5.3785 4.4257 3.9011 15 6 4.0605 3.3597 -1.1608 16 8 3.8835 2.7845 -2.2139 17 6 4.3687 4.8349 -1.1506 18 1 4.9639 5.0599 -0.2656 19 6 3.0619 5.6036 -1.0623 20 6 3.3693 7.1072 -1.0164 21 16 3.9093 7.5984 -2.6794 22 6 5.0670 6.3340 -3.0976 23 6 5.8849 6.5444 -4.2096 24 6 6.7994 5.5906 -4.5986 25 6 6.9058 4.4146 -3.8778 26 6 6.1045 4.2065 -2.7767 27 6 5.1782 5.1646 -2.3700 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8892 33 1 2.5587 1.4833 3.2032 34 1 2.4490 5.3831 -1.9363 35 1 2.5278 5.3127 -0.1576 36 1 4.1638 7.3014 -0.2960 37 1 2.4731 7.6619 -0.7385 38 1 5.8000 7.4638 -4.7698 39 1 7.4292 5.7599 -5.4594 40 1 7.6172 3.6596 -4.1782 41 1 6.1952 3.2854 -2.2201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358564986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:43 Heat of formation + Delta-G solvation = -79.856217 kcal Electronic energy + Delta-G solvation = -27715.126966 eV Core-core repulsion = 23879.837432 eV Total energy + Delta-G solvation = -3835.289534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00745 -39.17195 -37.97788 -35.61151 -34.77872 -34.67906 -31.65297 -30.74453 -30.41265 -28.90811 -27.16185 -26.06918 -24.60385 -22.79964 -22.36836 -21.13688 -20.01960 -19.28692 -17.52335 -17.10836 -16.69320 -16.43852 -15.61026 -15.47490 -15.32856 -15.20504 -14.74857 -14.35107 -14.28465 -13.87261 -13.41108 -13.20385 -12.94019 -12.84494 -12.58512 -12.37568 -12.36308 -12.13548 -11.84390 -11.55704 -11.37149 -11.29220 -11.14727 -11.03047 -10.84775 -10.64117 -10.49651 -10.22764 -9.88293 -9.81987 -9.60019 -9.39820 -9.09496 -8.64027 -8.35745 -8.00341 -7.13212 -6.57675 -4.22054 1.51530 1.68157 1.86618 2.62434 3.00746 3.10034 3.12309 3.38368 3.63530 3.88628 3.98008 4.00962 4.52941 4.83652 4.94259 5.14045 5.17458 5.24802 5.31756 5.54308 5.65722 5.66524 5.72640 5.73500 5.84036 5.89530 5.91179 6.02558 6.13704 6.22916 6.29573 6.36856 6.42543 6.56246 6.58878 6.73613 6.76671 6.90004 7.18375 7.24717 7.40883 7.54944 8.12264 8.86662 9.03621 9.23345 9.62898 10.46764 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.004730 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.982212 B = 5917.688464 C = 6668.155640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.489 3.511 4 O -0.510 6.510 5 C 0.155 3.845 6 N -0.430 5.430 7 C -0.335 4.335 8 H 0.101 0.899 9 C 0.046 3.954 10 N -0.879 5.879 11 Si 0.927 3.073 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.485 3.515 16 O -0.588 6.588 17 C -0.061 4.061 18 H 0.106 0.894 19 C -0.103 4.103 20 C -0.095 4.095 21 S -0.146 6.146 22 C -0.071 4.071 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.076 4.076 27 C -0.053 4.053 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.274 0.726 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 3.997 -4.219 6.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.331 3.669 4 O -0.396 6.396 5 C 0.029 3.971 6 N -0.149 5.149 7 C -0.462 4.462 8 H 0.119 0.881 9 C -0.159 4.159 10 N -0.518 5.518 11 Si 0.754 3.246 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.273 3.727 16 O -0.472 6.472 17 C -0.082 4.082 18 H 0.124 0.876 19 C -0.142 4.142 20 C -0.243 4.243 21 S 0.096 5.904 22 C -0.184 4.184 23 C -0.132 4.132 24 C -0.133 4.133 25 C -0.147 4.147 26 C -0.096 4.096 27 C -0.059 4.059 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.195 4.905 -5.114 7.418 hybrid contribution 0.083 -0.692 1.810 1.939 sum 2.278 4.213 -3.304 5.818 Atomic orbital electron populations 1.22933 0.78767 1.01858 1.01545 1.86462 1.21593 1.35448 1.85570 1.23979 0.92364 0.80469 0.70109 1.90497 1.66691 1.36451 1.45959 1.20587 0.86986 0.85596 1.03908 1.43285 1.57592 1.08025 1.05950 1.19596 1.26103 1.16978 0.83517 0.88116 1.25306 0.94601 0.95962 0.99989 1.69642 1.31383 1.22071 1.28723 0.85911 0.78904 0.79292 0.80535 1.20111 1.20683 1.19309 1.19849 0.81268 0.87693 0.83875 1.90582 1.55647 1.69842 1.31175 1.19815 0.96757 0.95110 0.96471 0.87601 1.21388 0.96634 0.91011 1.05126 1.23803 1.04959 1.00270 0.95297 1.85130 1.50390 1.33518 1.21382 1.21192 1.00553 0.97002 0.99628 1.20741 0.96278 0.99813 0.96389 1.20907 0.98609 0.94052 0.99739 1.20999 1.00052 0.97503 0.96117 1.21280 0.93842 0.97936 0.96514 1.19352 0.97050 0.92891 0.96592 0.89565 0.92721 0.93165 0.90615 0.84570 0.91496 0.90455 0.88246 0.88913 0.87147 0.86073 0.85998 0.86180 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.37 -7.95 10.56 -39.24 -0.41 -8.37 16 3 C 0.49 11.80 6.05 36.01 0.22 12.02 16 4 O -0.51 -13.60 15.85 -18.75 -0.30 -13.90 16 5 C 0.15 3.60 5.18 -5.19 -0.03 3.57 16 6 N -0.43 -10.19 2.17 -116.09 -0.25 -10.44 16 7 C -0.33 -7.81 8.95 -14.93 -0.13 -7.95 16 8 H 0.10 2.20 5.99 -52.48 -0.31 1.89 16 9 C 0.05 1.07 5.35 -17.47 -0.09 0.98 16 10 N -0.88 -21.53 8.61 55.50 0.48 -21.05 16 11 Si 0.93 18.51 29.56 -169.99 -5.02 13.49 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 15 C 0.48 11.21 5.14 -10.98 -0.06 11.15 16 16 O -0.59 -14.95 14.80 5.55 0.08 -14.87 16 17 C -0.06 -1.20 1.85 -93.82 -0.17 -1.37 16 18 H 0.11 2.04 5.87 -51.93 -0.30 1.73 16 19 C -0.10 -1.90 5.03 -27.03 -0.14 -2.04 16 20 C -0.10 -1.41 6.53 37.44 0.24 -1.17 16 21 S -0.15 -2.26 21.99 -107.50 -2.36 -4.62 16 22 C -0.07 -1.23 6.05 -39.08 -0.24 -1.46 16 23 C -0.11 -1.65 9.65 -39.24 -0.38 -2.03 16 24 C -0.11 -1.58 10.06 -39.73 -0.40 -1.98 16 25 C -0.13 -1.93 10.03 -39.72 -0.40 -2.33 16 26 C -0.08 -1.39 8.21 -39.35 -0.32 -1.71 16 27 C -0.05 -0.99 5.26 -104.56 -0.55 -1.54 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 31 H 0.08 1.68 7.53 -51.93 -0.39 1.29 16 32 H 0.14 3.18 6.29 -51.93 -0.33 2.85 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 35 H 0.10 1.99 8.14 -51.92 -0.42 1.56 16 36 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 37 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.12 1.57 8.05 -52.49 -0.42 1.15 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.12 2.38 6.63 -52.49 -0.35 2.03 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -29.54 350.36 -8.93 -38.47 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.04 Total: 10.05 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.38 Total: 5.96 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.23 Total: -31.49 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.63 Total: -37.14 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.36 Total: -4.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.54 -8.93 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358564986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.384 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds