Wall clock time and date at job start Sat Apr 11 2020 04:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 116.99954 * 2 1 4 4 O 1.20828 * 120.00039 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00369 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47530 * 180.02562 * 5 3 2 7 7 C 1.37091 * 119.99905 * 95.72676 * 6 5 3 8 8 H 1.08009 * 120.00295 * 153.13857 * 7 6 5 9 9 C 1.38953 * 120.00481 * 333.41563 * 7 6 5 10 10 N 1.31415 * 119.99484 * 4.59558 * 9 7 6 11 11 Si 1.86795 * 120.00232 * 184.59202 * 9 7 6 12 12 H 1.48499 * 109.47137 * 90.00441 * 11 9 7 13 13 H 1.48505 * 109.46855 * 209.99761 * 11 9 7 14 14 H 1.48493 * 109.47380 * 329.99944 * 11 9 7 15 15 C 1.34776 * 119.99666 * 275.72596 * 6 5 3 16 16 O 1.21290 * 120.00467 * 354.59057 * 15 6 5 17 17 C 1.50707 * 119.99473 * 174.58878 * 15 6 5 18 18 H 1.09002 * 108.61496 * 28.26117 * 17 15 6 19 19 C 1.51868 * 108.65614 * 270.35067 * 17 15 6 20 20 C 1.53538 * 108.97201 * 178.61901 * 19 17 15 21 21 S 1.81622 * 107.27846 * 72.68478 * 20 19 17 22 22 C 1.76459 * 102.60919 * 313.56650 * 21 20 19 23 23 C 1.39633 * 117.71725 * 192.75754 * 22 21 20 24 24 C 1.37738 * 120.62722 * 180.72066 * 23 22 21 25 25 C 1.38342 * 119.51002 * 359.97438 * 24 23 22 26 26 C 1.37758 * 120.00929 * 359.73719 * 25 24 23 27 27 C 1.38179 * 122.30195 * 12.97733 * 22 21 20 28 28 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47391 * 299.99508 * 1 2 3 30 30 H 1.09005 * 109.47260 * 60.00167 * 1 2 3 31 31 H 1.09005 * 109.47165 * 60.00072 * 5 3 2 32 32 H 1.09006 * 109.47053 * 300.00388 * 5 3 2 33 33 H 0.96997 * 119.99707 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.56088 * 298.46880 * 19 17 15 35 35 H 1.09007 * 109.55695 * 58.77616 * 19 17 15 36 36 H 1.08995 * 109.88757 * 313.24482 * 20 19 17 37 37 H 1.08998 * 109.95989 * 192.16335 * 20 19 17 38 38 H 1.07999 * 119.68616 * 0.74574 * 23 22 21 39 39 H 1.07998 * 120.24230 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.99686 * 179.74081 * 25 24 23 41 41 H 1.08002 * 119.46821 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2901 3.3028 1.1818 8 1 4.9796 4.1340 1.1901 9 6 3.7201 2.8611 2.3696 10 7 2.9569 1.7913 2.3741 11 14 4.0388 3.7879 3.9598 12 1 3.0001 4.8338 4.1398 13 1 3.9910 2.8410 5.1027 14 1 5.3785 4.4257 3.9011 15 6 4.0605 3.3597 -1.1608 16 8 3.8835 2.7845 -2.2139 17 6 4.3687 4.8349 -1.1506 18 1 4.9639 5.0599 -0.2656 19 6 3.0619 5.6036 -1.0623 20 6 3.3693 7.1072 -1.0164 21 16 3.9093 7.5984 -2.6794 22 6 5.0670 6.3340 -3.0976 23 6 5.8849 6.5444 -4.2096 24 6 6.7994 5.5906 -4.5986 25 6 6.9058 4.4146 -3.8778 26 6 6.1045 4.2065 -2.7767 27 6 5.1782 5.1646 -2.3700 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8892 33 1 2.5587 1.4833 3.2032 34 1 2.4490 5.3831 -1.9363 35 1 2.5278 5.3127 -0.1576 36 1 4.1638 7.3014 -0.2960 37 1 2.4731 7.6619 -0.7385 38 1 5.8000 7.4638 -4.7698 39 1 7.4292 5.7599 -5.4594 40 1 7.6172 3.6596 -4.1782 41 1 6.1952 3.2854 -2.2201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358564986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:38 Heat of formation + Delta-G solvation = -94.393997 kcal Electronic energy + Delta-G solvation = -27715.757371 eV Core-core repulsion = 23879.837432 eV Total energy + Delta-G solvation = -3835.919940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68574 -40.85472 -39.49463 -37.37065 -36.55445 -36.28987 -33.49103 -32.02803 -31.66028 -30.61722 -28.60604 -27.69179 -26.36204 -24.10227 -23.63971 -22.73280 -21.67225 -21.04208 -19.05530 -18.65199 -18.50959 -18.11013 -17.32230 -17.03071 -16.78238 -16.63240 -16.28914 -16.00741 -15.74424 -15.42514 -14.89952 -14.62464 -14.46101 -14.24657 -14.15677 -13.89187 -13.75143 -13.56876 -13.33208 -13.21943 -13.02938 -12.91735 -12.77058 -12.53716 -12.31601 -12.22113 -12.05099 -11.60644 -11.59989 -11.48902 -11.11634 -10.95379 -10.71390 -10.36376 -9.89113 -9.63484 -8.38351 -8.34441 -6.07806 0.26473 0.43028 0.65070 1.37687 1.38558 1.45679 1.56450 1.64676 1.77342 2.17984 2.30436 2.66255 2.91254 3.06968 3.53760 3.77375 3.82249 4.00698 4.14882 4.16117 4.23999 4.31215 4.32274 4.37381 4.46947 4.48894 4.53323 4.59351 4.67336 4.68698 4.83136 4.86168 4.92478 5.04106 5.07860 5.33963 5.39013 5.50964 5.61142 5.62810 5.72652 6.02035 6.28869 7.03522 7.17460 7.41538 7.81194 8.65979 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.004730 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.982212 B = 5917.688464 C = 6668.155640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.490 3.510 4 O -0.543 6.543 5 C 0.152 3.848 6 N -0.439 5.439 7 C -0.347 4.347 8 H 0.112 0.888 9 C 0.005 3.995 10 N -0.902 5.902 11 Si 0.991 3.009 12 H -0.280 1.280 13 H -0.282 1.282 14 H -0.254 1.254 15 C 0.479 3.521 16 O -0.619 6.619 17 C -0.052 4.052 18 H 0.106 0.894 19 C -0.095 4.095 20 C -0.090 4.090 21 S -0.128 6.128 22 C -0.090 4.090 23 C -0.111 4.111 24 C -0.101 4.101 25 C -0.127 4.127 26 C -0.101 4.101 27 C -0.079 4.079 28 H 0.134 0.866 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.272 0.728 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.145 0.855 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 5.580 -4.790 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.333 3.667 4 O -0.432 6.432 5 C 0.027 3.973 6 N -0.157 5.157 7 C -0.473 4.473 8 H 0.130 0.870 9 C -0.196 4.196 10 N -0.541 5.541 11 Si 0.814 3.186 12 H -0.206 1.206 13 H -0.208 1.208 14 H -0.177 1.177 15 C 0.269 3.731 16 O -0.506 6.506 17 C -0.073 4.073 18 H 0.124 0.876 19 C -0.134 4.134 20 C -0.238 4.238 21 S 0.114 5.886 22 C -0.203 4.203 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.085 4.085 28 H 0.152 0.848 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.163 0.837 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.127 6.472 -5.684 9.164 hybrid contribution -0.236 -1.282 1.897 2.301 sum 2.891 5.190 -3.788 7.046 Atomic orbital electron populations 1.23293 0.76220 1.04875 1.01155 1.86429 1.24070 1.33853 1.84948 1.24058 0.92627 0.80722 0.69251 1.90466 1.67422 1.37606 1.47663 1.20598 0.87018 0.85973 1.03740 1.43485 1.57533 1.08211 1.06460 1.19935 1.26514 1.17300 0.83561 0.87034 1.26102 0.94288 0.96500 1.02713 1.69746 1.32122 1.23166 1.29115 0.84947 0.79160 0.77812 0.76651 1.20588 1.20797 1.17733 1.20447 0.80413 0.89094 0.83182 1.90533 1.57059 1.70853 1.32133 1.19741 0.97425 0.92616 0.97529 0.87630 1.21241 0.95482 0.93756 1.02932 1.23811 1.06653 0.97455 0.95848 1.84989 1.49858 1.32392 1.21383 1.21475 1.01525 0.96960 1.00300 1.21153 0.95621 1.01026 0.95564 1.21376 0.97985 0.92599 1.00044 1.21323 0.99585 0.98812 0.94933 1.21257 0.95438 0.97318 0.98081 1.19318 0.97878 0.94284 0.97063 0.84837 0.93514 0.93193 0.90329 0.84912 0.91782 0.92695 0.90325 0.87531 0.84648 0.83529 0.81821 0.83729 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.48 16 2 O -0.38 -16.22 10.56 -51.35 -0.54 -16.77 16 3 C 0.49 24.43 6.05 71.24 0.43 24.86 16 4 O -0.54 -29.99 15.85 21.96 0.35 -29.64 16 5 C 0.15 7.39 5.18 85.63 0.44 7.83 16 6 N -0.44 -21.64 2.17 -639.58 -1.39 -23.03 16 7 C -0.35 -16.53 8.95 84.04 0.75 -15.78 16 8 H 0.11 4.94 5.99 -2.91 -0.02 4.92 16 9 C 0.01 0.25 5.35 84.93 0.45 0.71 16 10 N -0.90 -45.09 8.61 21.66 0.19 -44.90 16 11 Si 0.99 37.87 29.56 68.60 2.03 39.90 16 12 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 13 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 15 C 0.48 23.14 5.14 87.66 0.45 23.59 16 16 O -0.62 -33.02 14.80 -3.06 -0.05 -33.06 16 17 C -0.05 -2.13 1.85 -12.86 -0.02 -2.15 16 18 H 0.11 4.17 5.87 -2.39 -0.01 4.16 16 19 C -0.09 -3.59 5.03 30.40 0.15 -3.44 16 20 C -0.09 -2.56 6.53 72.16 0.47 -2.09 16 21 S -0.13 -3.74 21.99 -56.49 -1.24 -4.99 16 22 C -0.09 -3.00 6.05 22.59 0.14 -2.86 16 23 C -0.11 -3.03 9.65 22.49 0.22 -2.81 16 24 C -0.10 -2.47 10.06 22.18 0.22 -2.25 16 25 C -0.13 -3.66 10.03 22.18 0.22 -3.44 16 26 C -0.10 -3.74 8.21 22.42 0.18 -3.56 16 27 C -0.08 -3.01 5.26 -19.82 -0.10 -3.11 16 28 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 29 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 31 H 0.08 3.68 7.53 -2.38 -0.02 3.66 16 32 H 0.13 6.47 6.29 -2.38 -0.01 6.46 16 33 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 34 H 0.05 2.29 8.03 -2.39 -0.02 2.27 16 35 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 36 H 0.11 2.78 8.07 -2.39 -0.02 2.76 16 37 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.15 3.22 8.05 -2.91 -0.02 3.20 16 39 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.10 4.04 6.63 -2.91 -0.02 4.02 16 Total: -1.00 -66.04 350.36 5.61 -60.43 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 1.06 Total: 34.09 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 5.21 Total: 17.98 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.20 Total: -67.94 kcal Atomic # 8 Polarization: -79.23 SS G_CDS: -0.24 Total: -79.47 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.24 Total: -4.99 kcal Total: -66.04 5.61 -60.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358564986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.967 kcal (2) G-P(sol) polarization free energy of solvation -66.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds