Wall clock time and date at job start Sat Apr 11 2020 04:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48501 * 109.47143 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47255 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47091 * 119.99732 * 3 2 1 7 7 C 1.38943 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99960 * 197.98694 * 7 2 1 9 9 N 1.37094 * 120.00421 * 17.99189 * 7 2 1 10 10 C 1.34784 * 119.99886 * 44.48078 * 9 7 2 11 11 O 1.21294 * 119.99626 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46684 * 180.02562 * 12 10 9 14 14 N 1.40079 * 126.03490 * 270.02269 * 13 12 10 15 15 C 1.30839 * 108.20524 * 179.97438 * 14 13 12 16 16 C 1.50700 * 125.90477 * 180.02562 * 15 14 13 17 17 F 1.39890 * 109.47404 * 119.97542 * 16 15 14 18 18 F 1.39904 * 109.47326 * 239.98478 * 16 15 14 19 19 C 1.39871 * 108.20078 * 359.78232 * 15 14 13 20 20 C 1.34946 * 126.03503 * 90.00611 * 13 12 10 21 21 C 1.50696 * 126.12982 * 359.97438 * 20 13 12 22 22 F 1.39901 * 109.47278 * 149.99833 * 21 20 13 23 23 F 1.39903 * 109.46981 * 30.00249 * 21 20 13 24 24 C 1.46499 * 120.00418 * 224.48820 * 9 7 2 25 25 C 1.52995 * 117.49711 * 3.26997 * 24 9 7 26 26 C 1.53003 * 117.49492 * 294.60914 * 24 9 7 27 27 H 0.96998 * 119.99956 * 354.95964 * 1 2 3 28 28 H 1.08998 * 109.47136 * 60.00496 * 12 10 9 29 29 H 1.08996 * 109.47234 * 300.00129 * 12 10 9 30 30 H 1.09008 * 109.46742 * 359.97387 * 16 15 14 31 31 H 1.08002 * 126.04044 * 180.22552 * 19 15 14 32 32 H 1.08997 * 109.47630 * 270.00328 * 21 20 13 33 33 H 1.08998 * 115.55207 * 148.94143 * 24 9 7 34 34 H 1.08998 * 117.50002 * 359.97438 * 25 24 9 35 35 H 1.08995 * 117.50071 * 145.02401 * 25 24 9 36 36 H 1.08995 * 117.49703 * 214.97519 * 26 24 9 37 37 H 1.08997 * 117.49901 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0494 -1.2259 0.2894 9 7 1.3738 -2.3617 -0.3657 10 6 0.5768 -2.3788 -1.4524 11 8 0.4218 -1.3692 -2.1066 12 6 -0.1218 -3.6521 -1.8546 13 7 -0.9212 -3.4111 -3.0585 14 7 -2.2575 -2.9924 -3.0902 15 6 -2.6234 -2.8871 -4.3420 16 6 -3.9840 -2.4638 -4.8324 17 9 -3.8596 -1.3113 -5.6156 18 9 -4.5436 -3.4911 -5.5998 19 6 -1.5318 -3.2300 -5.1465 20 6 -0.5000 -3.5529 -4.3327 21 6 0.8752 -3.9864 -4.7709 22 9 0.7844 -4.6588 -5.9944 23 9 1.4233 -4.8413 -3.8086 24 6 1.5614 -3.5812 0.4243 25 6 2.4161 -3.4790 1.6891 26 6 2.9619 -4.1965 0.4519 27 1 -0.4850 0.8368 0.0738 28 1 -0.7735 -3.9803 -1.0450 29 1 0.6198 -4.4241 -2.0598 30 1 -4.6292 -2.2552 -3.9789 31 1 -1.5160 -3.2381 -6.2263 32 1 1.5135 -3.1103 -4.8843 33 1 0.7115 -4.2633 0.4449 34 1 2.8392 -2.5047 1.9333 35 1 2.1288 -4.0942 2.5417 36 1 3.0334 -5.2834 0.4913 37 1 3.7436 -3.6943 -0.1179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:15:53 Heat of formation + Delta-G solvation = -104.053714 kcal Electronic energy + Delta-G solvation = -29874.923047 eV Core-core repulsion = 24962.807065 eV Total energy + Delta-G solvation = -4912.115982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17876 -48.96426 -47.20096 -46.97304 -41.28621 -38.73030 -36.29417 -33.62361 -32.81447 -31.48850 -31.02458 -28.59270 -26.50425 -25.93135 -24.37205 -21.88551 -21.46069 -20.89016 -20.62533 -19.58220 -17.82233 -17.59291 -17.31135 -17.22860 -17.02756 -16.90689 -16.24754 -15.93344 -15.29224 -14.98984 -14.62390 -14.40008 -14.12679 -13.96030 -13.86071 -13.70743 -13.46747 -13.34307 -13.25639 -12.95121 -12.89635 -12.78151 -11.99588 -11.87186 -11.62659 -11.24861 -11.19294 -11.03666 -10.96077 -10.77021 -10.64519 -10.33205 -10.13842 -9.91656 -9.62636 -8.95328 -8.72904 -8.15884 -7.23960 -6.25967 -4.04506 1.62250 2.22081 2.43238 3.21137 3.29735 3.31384 3.41243 3.70343 3.80470 3.99694 4.11832 4.15657 4.41660 4.56727 4.63135 4.71474 4.83074 5.00681 5.05698 5.12062 5.37327 5.39728 5.50033 5.50532 5.59092 5.62994 5.84113 5.87546 6.10508 6.27534 6.36822 6.56923 6.79271 6.82876 7.46896 7.51790 8.08105 8.83515 8.91247 9.43844 9.99868 10.82167 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.004569 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.768687 B = 6126.670052 C = 7344.123846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.352 4.352 8 H 0.081 0.919 9 N -0.416 5.416 10 C 0.465 3.535 11 O -0.517 6.517 12 C 0.092 3.908 13 N -0.297 5.297 14 N -0.218 5.218 15 C -0.020 4.020 16 C 0.363 3.637 17 F -0.190 7.190 18 F -0.194 7.194 19 C -0.202 4.202 20 C 0.012 3.988 21 C 0.346 3.654 22 F -0.187 7.187 23 F -0.192 7.192 24 C 0.062 3.938 25 C -0.168 4.168 26 C -0.203 4.203 27 H 0.267 0.733 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 -9.492 -5.653 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.478 4.478 8 H 0.099 0.901 9 N -0.137 5.137 10 C 0.250 3.750 11 O -0.394 6.394 12 C -0.032 4.032 13 N -0.079 5.079 14 N -0.043 5.043 15 C -0.185 4.185 16 C 0.307 3.693 17 F -0.171 7.171 18 F -0.175 7.175 19 C -0.232 4.232 20 C -0.116 4.116 21 C 0.290 3.710 22 F -0.168 7.168 23 F -0.173 7.173 24 C -0.044 4.044 25 C -0.206 4.206 26 C -0.242 4.242 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.002 -8.758 -4.766 10.170 hybrid contribution 0.627 0.599 -0.644 1.080 sum -1.375 -8.159 -5.410 9.886 Atomic orbital electron populations 1.69809 1.06574 1.27907 1.41567 1.25283 0.94861 0.99557 0.94068 0.86230 0.79287 0.81704 0.78574 1.19886 1.21100 1.20197 1.18819 0.94551 0.83467 1.50966 0.90119 1.42646 1.43519 1.07267 1.20297 1.19721 0.84274 0.88336 0.82689 1.90604 1.62183 1.33647 1.52973 1.22300 0.95051 1.00789 0.85089 1.47978 1.07828 1.47715 1.04416 1.77329 0.92303 1.16196 1.18452 1.22453 0.97210 1.06434 0.92394 1.19169 0.89588 0.73164 0.87363 1.93029 1.96775 1.49876 1.77449 1.93014 1.85787 1.60234 1.78455 1.20835 0.91245 1.10469 1.00640 1.21308 0.96897 1.06699 0.86729 1.19765 0.89955 0.88396 0.72840 1.93025 1.96983 1.82794 1.43983 1.92931 1.86774 1.73817 1.63822 1.21808 0.92926 0.91510 0.98114 1.23076 1.03903 1.02608 0.90996 1.23344 0.99171 0.98709 1.03026 0.92268 0.86985 0.85639 0.85339 0.82433 0.84382 0.88031 0.87313 0.89586 0.89516 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.79 11.74 55.50 0.65 -23.13 16 2 C 0.07 2.00 4.39 -17.47 -0.08 1.93 16 3 Si 0.92 21.26 29.59 -169.99 -5.03 16.23 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.35 -9.03 7.91 -14.94 -0.12 -9.14 16 8 H 0.08 2.00 7.27 -52.49 -0.38 1.61 16 9 N -0.42 -9.66 2.83 -107.73 -0.31 -9.96 16 10 C 0.46 11.00 7.03 -10.98 -0.08 10.92 16 11 O -0.52 -14.49 14.20 5.54 0.08 -14.42 16 12 C 0.09 1.71 5.26 -5.19 -0.03 1.68 16 13 N -0.30 -5.65 3.10 -58.31 -0.18 -5.83 16 14 N -0.22 -4.24 12.58 33.67 0.42 -3.82 16 15 C -0.02 -0.34 6.65 -82.40 -0.55 -0.88 16 16 C 0.36 4.96 5.79 36.01 0.21 5.17 16 17 F -0.19 -2.81 17.32 2.25 0.04 -2.78 16 18 F -0.19 -2.59 17.32 2.25 0.04 -2.55 16 19 C -0.20 -3.26 10.33 -40.01 -0.41 -3.68 16 20 C 0.01 0.21 6.67 -82.27 -0.55 -0.34 16 21 C 0.35 4.84 5.73 36.00 0.21 5.05 16 22 F -0.19 -2.46 17.05 2.25 0.04 -2.43 16 23 F -0.19 -2.77 14.57 2.25 0.03 -2.73 16 24 C 0.06 1.13 5.87 -67.93 -0.40 0.73 16 25 C -0.17 -2.77 9.80 -26.69 -0.26 -3.03 16 26 C -0.20 -3.12 10.36 -26.69 -0.28 -3.39 16 27 H 0.27 7.47 8.32 -40.82 -0.34 7.13 16 28 H 0.11 1.93 7.57 -51.93 -0.39 1.53 16 29 H 0.13 1.99 5.52 -51.93 -0.29 1.70 16 30 H 0.13 1.43 8.14 -51.92 -0.42 1.01 16 31 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.10 1.61 6.96 -51.93 -0.36 1.24 16 34 H 0.11 2.01 6.73 -51.93 -0.35 1.66 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -32.96 338.55 -4.89 -37.85 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.44 Total: 3.45 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.33 Total: 5.02 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.59 Total: -42.74 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 0.15 Total: -10.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.96 -4.89 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.203 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds