Wall clock time and date at job start Sat Apr 11 2020 04:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48501 * 109.47143 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47255 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47091 * 119.99732 * 3 2 1 7 7 C 1.38943 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99960 * 197.98694 * 7 2 1 9 9 N 1.37094 * 120.00421 * 17.99189 * 7 2 1 10 10 C 1.34784 * 119.99886 * 44.48078 * 9 7 2 11 11 O 1.21294 * 119.99626 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46684 * 180.02562 * 12 10 9 14 14 N 1.40079 * 126.03490 * 270.02269 * 13 12 10 15 15 C 1.30839 * 108.20524 * 179.97438 * 14 13 12 16 16 C 1.50700 * 125.90477 * 180.02562 * 15 14 13 17 17 F 1.39890 * 109.47404 * 119.97542 * 16 15 14 18 18 F 1.39904 * 109.47326 * 239.98478 * 16 15 14 19 19 C 1.39871 * 108.20078 * 359.78232 * 15 14 13 20 20 C 1.34946 * 126.03503 * 90.00611 * 13 12 10 21 21 C 1.50696 * 126.12982 * 359.97438 * 20 13 12 22 22 F 1.39901 * 109.47278 * 149.99833 * 21 20 13 23 23 F 1.39903 * 109.46981 * 30.00249 * 21 20 13 24 24 C 1.46499 * 120.00418 * 224.48820 * 9 7 2 25 25 C 1.52995 * 117.49711 * 3.26997 * 24 9 7 26 26 C 1.53003 * 117.49492 * 294.60914 * 24 9 7 27 27 H 0.96998 * 119.99956 * 354.95964 * 1 2 3 28 28 H 1.08998 * 109.47136 * 60.00496 * 12 10 9 29 29 H 1.08996 * 109.47234 * 300.00129 * 12 10 9 30 30 H 1.09008 * 109.46742 * 359.97387 * 16 15 14 31 31 H 1.08002 * 126.04044 * 180.22552 * 19 15 14 32 32 H 1.08997 * 109.47630 * 270.00328 * 21 20 13 33 33 H 1.08998 * 115.55207 * 148.94143 * 24 9 7 34 34 H 1.08998 * 117.50002 * 359.97438 * 25 24 9 35 35 H 1.08995 * 117.50071 * 145.02401 * 25 24 9 36 36 H 1.08995 * 117.49703 * 214.97519 * 26 24 9 37 37 H 1.08997 * 117.49901 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0494 -1.2259 0.2894 9 7 1.3738 -2.3617 -0.3657 10 6 0.5768 -2.3788 -1.4524 11 8 0.4218 -1.3692 -2.1066 12 6 -0.1218 -3.6521 -1.8546 13 7 -0.9212 -3.4111 -3.0585 14 7 -2.2575 -2.9924 -3.0902 15 6 -2.6234 -2.8871 -4.3420 16 6 -3.9840 -2.4638 -4.8324 17 9 -3.8596 -1.3113 -5.6156 18 9 -4.5436 -3.4911 -5.5998 19 6 -1.5318 -3.2300 -5.1465 20 6 -0.5000 -3.5529 -4.3327 21 6 0.8752 -3.9864 -4.7709 22 9 0.7844 -4.6588 -5.9944 23 9 1.4233 -4.8413 -3.8086 24 6 1.5614 -3.5812 0.4243 25 6 2.4161 -3.4790 1.6891 26 6 2.9619 -4.1965 0.4519 27 1 -0.4850 0.8368 0.0738 28 1 -0.7735 -3.9803 -1.0450 29 1 0.6198 -4.4241 -2.0598 30 1 -4.6292 -2.2552 -3.9789 31 1 -1.5160 -3.2381 -6.2263 32 1 1.5135 -3.1103 -4.8843 33 1 0.7115 -4.2633 0.4449 34 1 2.8392 -2.5047 1.9333 35 1 2.1288 -4.0942 2.5417 36 1 3.0334 -5.2834 0.4913 37 1 3.7436 -3.6943 -0.1179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:15:52 Heat of formation + Delta-G solvation = -124.086718 kcal Electronic energy + Delta-G solvation = -29875.791743 eV Core-core repulsion = 24962.807065 eV Total energy + Delta-G solvation = -4912.984678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.28714 -50.07701 -48.30076 -48.08536 -42.61160 -40.41108 -37.85456 -35.18061 -34.51718 -33.02844 -32.57762 -29.99573 -27.75328 -27.41255 -25.99124 -23.23776 -22.89935 -22.21805 -21.94784 -21.16604 -19.14527 -18.76456 -18.52701 -18.41658 -18.31166 -18.14619 -17.88774 -17.27941 -16.87229 -16.42708 -16.09122 -15.89198 -15.70378 -15.25028 -15.10209 -14.96238 -14.69787 -14.67192 -14.45605 -14.37928 -14.14159 -13.95084 -13.73047 -13.30420 -12.94929 -12.93734 -12.81821 -12.64535 -12.32705 -12.22151 -12.16776 -11.96563 -11.70475 -11.27655 -11.05656 -10.73623 -10.29207 -9.79073 -9.05677 -8.26121 -6.05522 0.28729 0.92337 1.16774 1.34068 1.42115 1.45406 2.06399 2.23886 2.31026 2.53824 2.86419 2.96214 3.07078 3.09185 3.24478 3.30807 3.61688 3.72653 3.78810 3.84499 3.95520 4.04643 4.14821 4.23836 4.26693 4.30572 4.44884 4.63146 4.92648 5.00973 5.10997 5.26830 5.43292 5.49238 5.51615 6.12933 6.19018 6.93878 7.06711 7.57393 8.18256 8.81094 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.004569 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.768687 B = 6126.670052 C = 7344.123846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.024 3.976 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.352 4.352 8 H 0.084 0.916 9 N -0.431 5.431 10 C 0.455 3.545 11 O -0.572 6.572 12 C 0.107 3.893 13 N -0.315 5.315 14 N -0.256 5.256 15 C -0.023 4.023 16 C 0.368 3.632 17 F -0.196 7.196 18 F -0.190 7.190 19 C -0.209 4.209 20 C 0.005 3.995 21 C 0.353 3.647 22 F -0.180 7.180 23 F -0.193 7.193 24 C 0.031 3.969 25 C -0.168 4.168 26 C -0.174 4.174 27 H 0.258 0.742 28 H 0.123 0.877 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.181 0.819 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -11.294 -5.740 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.183 4.183 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.179 1.179 7 C -0.480 4.480 8 H 0.102 0.898 9 N -0.151 5.151 10 C 0.242 3.758 11 O -0.453 6.453 12 C -0.017 4.017 13 N -0.098 5.098 14 N -0.081 5.081 15 C -0.188 4.188 16 C 0.313 3.687 17 F -0.178 7.178 18 F -0.171 7.171 19 C -0.238 4.238 20 C -0.123 4.123 21 C 0.297 3.703 22 F -0.161 7.161 23 F -0.174 7.174 24 C -0.073 4.073 25 C -0.206 4.206 26 C -0.212 4.212 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.198 0.802 32 H 0.171 0.829 33 H 0.145 0.855 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.189 -10.601 -4.820 11.706 hybrid contribution 0.437 1.064 -0.657 1.325 sum -0.752 -9.537 -5.477 11.024 Atomic orbital electron populations 1.69933 1.07986 1.27691 1.44544 1.26039 0.95408 1.02587 0.94224 0.85407 0.78120 0.78254 0.78940 1.20595 1.21868 1.17869 1.19058 0.94823 0.84689 1.49411 0.89837 1.42869 1.43096 1.08236 1.20933 1.20499 0.83822 0.89349 0.82147 1.90559 1.63980 1.36031 1.54689 1.22150 0.95434 0.98370 0.85765 1.48033 1.07918 1.48782 1.05023 1.77253 0.93126 1.17741 1.19954 1.23027 0.98694 1.05177 0.91936 1.19349 0.88618 0.72814 0.87944 1.93016 1.96756 1.50279 1.77722 1.93019 1.85488 1.60131 1.78462 1.21237 0.90882 1.09945 1.01787 1.21857 0.98212 1.06075 0.86187 1.19800 0.88745 0.88857 0.72856 1.93040 1.96879 1.82711 1.43458 1.92914 1.86606 1.73903 1.63995 1.22160 0.95542 0.90444 0.99186 1.23128 1.03202 1.02245 0.91981 1.23362 0.96203 1.00654 1.01016 0.93257 0.85885 0.82887 0.82658 0.80163 0.82876 0.85481 0.89937 0.86475 0.85532 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.55 11.74 21.66 0.25 -51.29 16 2 C 0.02 1.34 4.39 84.92 0.37 1.71 16 3 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.35 -18.26 7.91 84.04 0.66 -17.59 16 8 H 0.08 4.15 7.27 -2.91 -0.02 4.13 16 9 N -0.43 -19.90 2.83 -613.13 -1.74 -21.64 16 10 C 0.45 21.63 7.03 87.66 0.62 22.24 16 11 O -0.57 -32.84 14.20 -3.07 -0.04 -32.89 16 12 C 0.11 3.87 5.26 85.63 0.45 4.32 16 13 N -0.32 -11.82 3.10 -338.40 -1.05 -12.87 16 14 N -0.26 -9.96 12.58 -47.38 -0.60 -10.55 16 15 C -0.02 -0.75 6.65 43.10 0.29 -0.46 16 16 C 0.37 9.64 5.79 71.24 0.41 10.05 16 17 F -0.20 -5.63 17.32 44.97 0.78 -4.85 16 18 F -0.19 -4.78 17.32 44.97 0.78 -4.00 16 19 C -0.21 -6.52 10.33 21.99 0.23 -6.30 16 20 C 0.01 0.17 6.67 41.40 0.28 0.44 16 21 C 0.35 9.29 5.73 71.23 0.41 9.70 16 22 F -0.18 -4.37 17.05 44.97 0.77 -3.60 16 23 F -0.19 -5.15 14.57 44.97 0.66 -4.49 16 24 C 0.03 1.07 5.87 44.99 0.26 1.34 16 25 C -0.17 -5.14 9.80 30.62 0.30 -4.84 16 26 C -0.17 -4.76 10.36 30.62 0.32 -4.45 16 27 H 0.26 15.08 8.32 -92.71 -0.77 14.31 16 28 H 0.12 4.11 7.57 -2.39 -0.02 4.09 16 29 H 0.15 4.54 5.52 -2.39 -0.01 4.53 16 30 H 0.16 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.18 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.13 3.66 6.96 -2.39 -0.02 3.64 16 34 H 0.08 2.98 6.73 -2.39 -0.02 2.96 16 35 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -73.52 338.55 7.58 -65.94 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.14 Total: 17.59 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 4.60 Total: 16.17 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.13 Total: -96.35 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.04 Total: -32.89 kcal Atomic # 9 Polarization: -19.93 SS G_CDS: 2.98 Total: -16.95 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -73.52 7.58 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.150 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds