Wall clock time and date at job start Sat Apr 11 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47404 * 2 1 4 4 C 1.53000 * 109.47352 * 120.00441 * 2 1 3 5 5 N 1.46498 * 109.46801 * 294.99852 * 4 2 1 6 6 C 1.36940 * 119.99767 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00201 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00432 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99799 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47061 * 90.00189 * 10 8 6 12 12 H 1.48498 * 109.47202 * 210.00132 * 10 8 6 13 13 H 1.48500 * 109.47185 * 330.00262 * 10 8 6 14 14 C 1.53005 * 109.46908 * 240.00176 * 2 1 3 15 15 N 1.46498 * 109.47032 * 65.00108 * 14 2 1 16 16 C 1.34779 * 120.00293 * 179.97438 * 15 14 2 17 17 O 1.21637 * 119.99484 * 0.02562 * 16 15 14 18 18 C 1.47267 * 120.00431 * 180.02562 * 16 15 14 19 19 C 1.35078 * 122.43183 * 180.02562 * 18 16 15 20 20 S 1.71008 * 109.14352 * 179.97438 * 19 18 16 21 21 C 1.75989 * 90.59148 * 359.97438 * 20 19 18 22 22 C 1.47873 * 125.32055 * 179.97438 * 21 20 19 23 23 C 1.46861 * 127.14225 * 359.73820 * 22 21 20 24 24 C 1.34300 * 106.00743 * 179.82502 * 23 22 21 25 25 O 1.34171 * 109.05461 * 0.44306 * 24 23 22 26 26 C 1.34002 * 110.80244 * 359.69909 * 25 24 23 27 27 N 1.29880 * 109.36663 * 0.02562 * 21 20 19 28 28 H 1.09008 * 109.46814 * 300.00233 * 1 2 3 29 29 H 1.09000 * 109.46901 * 59.99435 * 1 2 3 30 30 H 1.08991 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46604 * 54.99595 * 4 2 1 32 32 H 1.08994 * 109.47086 * 174.99188 * 4 2 1 33 33 H 0.96996 * 120.00495 * 359.97438 * 5 4 2 34 34 H 0.96999 * 119.99787 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47167 * 305.00418 * 14 2 1 36 36 H 1.08994 * 109.47182 * 185.00248 * 14 2 1 37 37 H 0.96999 * 120.00091 * 0.02562 * 15 14 2 38 38 H 1.07996 * 125.42796 * 0.23418 * 19 18 16 39 39 H 1.08005 * 126.99240 * 359.97438 * 23 22 21 40 40 H 1.08005 * 125.46636 * 180.14405 * 24 23 22 41 41 H 1.07991 * 125.78993 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4423 6 6 2.0021 -0.4205 3.6854 7 1 2.5631 -1.3378 3.7863 8 6 1.6354 0.2966 4.8160 9 7 1.9709 -0.1416 6.0109 10 14 0.6656 1.8837 4.6416 11 1 -0.7880 1.5808 4.6661 12 1 1.0005 2.7945 5.7656 13 1 1.0134 2.5373 3.3543 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9963 -0.4129 -3.6660 17 8 2.6281 -1.4461 -3.7797 18 6 1.6072 0.3480 -4.8653 19 6 1.9253 -0.0560 -6.1144 20 16 1.3093 1.0719 -7.2426 21 6 0.6434 2.0436 -5.9351 22 6 -0.1096 3.3048 -6.1051 23 6 -0.4360 3.9793 -7.3682 24 6 -1.1289 5.0795 -7.0323 25 8 -1.2410 5.1357 -5.6964 26 6 -0.6388 4.0845 -5.1237 27 7 0.9175 1.4804 -4.7973 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6053 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2054 33 1 1.1490 0.8593 2.3518 34 1 1.7150 0.3598 6.8008 35 1 1.6053 -1.7197 -1.2953 36 1 3.1262 -0.7995 -1.2057 37 1 1.1489 0.8595 -2.3517 38 1 2.4767 -0.9511 -6.3614 39 1 -0.1743 3.6549 -8.3646 40 1 -1.5274 5.8053 -7.7258 41 1 -0.5825 3.8896 -4.0630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319257544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:58 Heat of formation + Delta-G solvation = 32.259747 kcal Electronic energy + Delta-G solvation = -24827.759039 eV Core-core repulsion = 21029.623969 eV Total energy + Delta-G solvation = -3798.135070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.93333 -40.68896 -38.86714 -36.95244 -34.51216 -33.96689 -32.49107 -31.21723 -30.52389 -29.57099 -27.24496 -26.24447 -25.30648 -23.49830 -22.23098 -21.86729 -20.83899 -20.25282 -19.49553 -19.14242 -17.96644 -17.51116 -16.87755 -16.53977 -16.00294 -15.81816 -15.58893 -14.99049 -14.73710 -14.42178 -14.12695 -13.94288 -13.71671 -13.67289 -13.44906 -13.15578 -12.75559 -12.61742 -12.45529 -12.36067 -12.18024 -11.43369 -11.05079 -10.96413 -10.77268 -10.64194 -10.60665 -10.42295 -10.20986 -10.06452 -10.02892 -9.57377 -9.57303 -9.12161 -8.89120 -8.68120 -7.22212 -5.75697 -3.11252 -0.10481 0.71225 1.14302 1.15710 1.49549 2.31200 2.50330 3.05708 3.19082 3.37114 3.39301 3.42367 3.45298 4.23219 4.26045 4.57187 4.59535 4.78928 4.83394 4.89904 4.96105 5.10938 5.15517 5.26789 5.45526 5.54667 5.56701 5.68488 5.72647 5.75126 5.87970 5.89842 6.11690 6.24726 6.37391 6.46722 6.50477 6.66957 6.76479 6.94875 7.44157 8.00746 8.04670 8.43267 9.22232 9.94355 10.14174 11.42772 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002377 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.346521 B =11777.894532 C =13731.943521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.126 3.874 15 N -0.706 5.706 16 C 0.589 3.411 17 O -0.536 6.536 18 C 0.019 3.981 19 C -0.219 4.219 20 S 0.183 5.817 21 C 0.132 3.868 22 C -0.141 4.141 23 C -0.199 4.199 24 C -0.026 4.026 25 O -0.174 6.174 26 C 0.041 3.959 27 N -0.444 5.444 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.192 0.808 39 H 0.157 0.843 40 H 0.209 0.791 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 9.411 -34.399 36.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.356 5.356 16 C 0.372 3.628 17 O -0.413 6.413 18 C -0.117 4.117 19 C -0.361 4.361 20 S 0.441 5.559 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.219 4.219 24 C -0.092 4.092 25 O -0.069 6.069 26 C -0.032 4.032 27 N -0.160 5.160 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.210 0.790 39 H 0.174 0.826 40 H 0.226 0.774 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.929 8.987 -34.727 36.357 hybrid contribution -0.482 0.798 0.682 1.155 sum -6.411 9.784 -34.044 35.998 Atomic orbital electron populations 1.21815 0.94705 1.02294 1.01292 1.21607 0.96719 1.00613 0.94438 0.90510 1.20551 0.97213 0.94242 0.84263 1.42685 1.67900 1.27087 1.02341 1.19067 1.29471 1.07023 0.81722 0.89167 1.24677 1.00849 0.98628 0.95109 1.69703 1.51352 1.40269 0.96919 0.86547 0.80437 0.84641 0.76906 1.21062 1.21727 1.20364 1.21477 1.00487 0.95338 0.82500 1.45874 1.56560 1.27924 1.05285 1.17087 0.79526 0.84061 0.82138 1.90831 1.40404 1.23668 1.86372 1.20144 1.02784 0.94118 0.94608 1.26508 1.06981 1.06645 0.96010 1.83815 1.46922 1.14166 1.10947 1.24761 1.01519 0.98011 0.90146 1.19036 1.06754 0.94856 0.93997 1.22762 1.04406 0.96841 0.97901 1.23944 1.02997 1.00624 0.81662 1.83953 1.60805 1.41562 1.20604 1.24416 0.94605 0.85130 0.99072 1.67007 1.13974 1.08242 1.26770 0.91826 0.93520 0.92343 0.95054 0.95235 0.80621 0.93070 0.90860 0.90867 0.75536 0.79042 0.82554 0.77398 0.76623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.94 37.16 0.33 -1.68 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.17 3.16 5.65 -4.04 -0.02 3.13 16 5 N -0.75 -17.87 5.13 -59.91 -0.31 -18.18 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 10 Si 0.88 22.12 27.73 -169.99 -4.71 17.40 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.71 -8.94 5.28 -61.43 -0.32 -9.27 16 16 C 0.59 8.15 7.79 -12.59 -0.10 8.05 16 17 O -0.54 -8.87 16.65 5.24 0.09 -8.78 16 18 C 0.02 0.22 6.64 -84.92 -0.56 -0.34 16 19 C -0.22 -2.11 10.56 29.61 0.31 -1.80 16 20 S 0.18 1.31 23.07 -107.50 -2.48 -1.17 16 21 C 0.13 1.20 7.46 -14.43 -0.11 1.09 16 22 C -0.14 -1.10 6.32 -103.25 -0.65 -1.75 16 23 C -0.20 -1.10 11.04 -37.48 -0.41 -1.51 16 24 C -0.03 -0.12 12.04 29.34 0.35 0.24 16 25 O -0.17 -1.17 10.54 6.87 0.07 -1.10 16 26 C 0.04 0.29 12.05 29.95 0.36 0.65 16 27 N -0.44 -4.80 10.03 -8.11 -0.08 -4.88 16 28 H 0.06 0.99 7.18 -51.92 -0.37 0.62 16 29 H 0.05 0.54 7.18 -51.93 -0.37 0.17 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 8.27 4.71 -40.82 -0.19 8.08 16 34 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.41 4.63 7.13 -40.82 -0.29 4.34 16 38 H 0.19 1.64 7.99 -52.49 -0.42 1.22 16 39 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.21 0.15 8.06 -52.48 -0.42 -0.27 16 41 H 0.22 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -35.25 368.73 -7.46 -42.71 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.04 Total: 7.77 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.00 Total: -1.24 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.06 Total: -61.15 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.16 Total: -9.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.48 Total: -1.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.25 -7.46 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319257544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.972 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds