Wall clock time and date at job start Sat Apr 11 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21638 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.47266 * 120.00549 * 179.97438 * 16 15 14 19 19 C 1.35082 * 122.43142 * 180.02562 * 18 16 15 20 20 S 1.71003 * 109.14219 * 180.02562 * 19 18 16 21 21 C 1.75995 * 90.59593 * 359.97438 * 20 19 18 22 22 C 1.47865 * 125.32381 * 179.97438 * 21 20 19 23 23 C 1.46859 * 127.14430 * 359.74360 * 22 21 20 24 24 C 1.34302 * 106.01178 * 179.82770 * 23 22 21 25 25 O 1.34172 * 109.05032 * 0.43225 * 24 23 22 26 26 C 1.34004 * 110.80335 * 359.71195 * 25 24 23 27 27 N 1.29882 * 109.36034 * 359.73980 * 21 20 19 28 28 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 30 30 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 36 36 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 37 37 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 38 38 H 1.07999 * 125.42832 * 359.97401 * 19 18 16 39 39 H 1.08007 * 126.99090 * 359.95853 * 23 22 21 40 40 H 1.07998 * 125.47487 * 180.11181 * 24 23 22 41 41 H 1.08004 * 125.79030 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.0575 -1.2029 -7.0370 12 1 2.3063 0.8390 -7.4264 13 1 3.3985 -1.0764 -6.4172 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6275 -1.4464 3.7798 18 6 1.6066 0.3476 4.8653 19 6 1.9247 -0.0564 6.1144 20 16 1.3088 1.0714 7.2426 21 6 0.6440 2.0440 5.9350 22 6 -0.1092 3.3050 6.1052 23 6 -0.4460 3.9731 7.3689 24 6 -1.1283 5.0799 7.0323 25 8 -1.2413 5.1355 5.6965 26 6 -0.6391 4.0843 5.1238 27 7 0.9228 1.4836 4.7970 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 0.7072 1.9230 -5.4823 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7993 1.2057 37 1 1.1483 0.8592 2.3518 38 1 2.4790 -0.9499 6.3613 39 1 -0.1942 3.6428 8.3659 40 1 -1.5269 5.8056 7.7258 41 1 -0.5840 3.8886 4.0631 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319257554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:15:02 Heat of formation + Delta-G solvation = 27.825438 kcal Electronic energy + Delta-G solvation = -24735.638832 eV Core-core repulsion = 20937.311476 eV Total energy + Delta-G solvation = -3798.327356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.87752 -40.62816 -38.79621 -36.79238 -34.36765 -33.91147 -32.45455 -31.15793 -30.04222 -29.51229 -27.13913 -26.00376 -25.15694 -23.52811 -22.19872 -22.15117 -20.77215 -20.09434 -19.39324 -19.04345 -17.87508 -17.19445 -16.68661 -16.48320 -15.95291 -15.74664 -15.52673 -14.90437 -14.66559 -14.41870 -13.97135 -13.89270 -13.66768 -13.55277 -13.39485 -13.02164 -12.70226 -12.59943 -12.32502 -12.26613 -12.02163 -11.04207 -10.93053 -10.88404 -10.69049 -10.56804 -10.45296 -10.34011 -10.18635 -9.97783 -9.96443 -9.65834 -9.52031 -9.04512 -8.85790 -8.62437 -6.90201 -5.75215 -3.03475 -0.05252 0.76297 1.19303 1.21521 1.54914 2.36888 2.56066 3.12829 3.25050 3.45293 3.48355 3.50726 3.52231 4.29035 4.31686 4.60843 4.62990 4.84186 4.89968 4.99889 5.08879 5.20838 5.24530 5.42772 5.51905 5.59617 5.62651 5.77900 5.84372 5.99235 6.00422 6.13455 6.28291 6.41630 6.47738 6.56115 6.68237 6.80035 6.89358 7.01065 7.51948 7.72288 8.11453 8.44053 9.55222 10.12780 10.47643 11.47859 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.002139 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.197983 B =13087.406131 C =14805.181192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.704 5.704 16 C 0.589 3.411 17 O -0.538 6.538 18 C 0.020 3.980 19 C -0.220 4.220 20 S 0.180 5.820 21 C 0.133 3.867 22 C -0.142 4.142 23 C -0.199 4.199 24 C -0.026 4.026 25 O -0.174 6.174 26 C 0.043 3.957 27 N -0.444 5.444 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.409 0.591 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 6.057 31.147 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.002 3.998 15 N -0.355 5.355 16 C 0.371 3.629 17 O -0.415 6.415 18 C -0.116 4.116 19 C -0.362 4.362 20 S 0.439 5.561 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.219 4.219 24 C -0.093 4.093 25 O -0.069 6.069 26 C -0.031 4.031 27 N -0.159 5.159 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.245 0.755 38 H 0.209 0.791 39 H 0.174 0.826 40 H 0.226 0.774 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.758 5.687 31.522 32.251 hybrid contribution 0.269 -0.388 -1.580 1.649 sum -3.489 5.299 29.942 30.607 Atomic orbital electron populations 1.21793 0.94603 1.01939 1.01576 1.21552 0.96801 1.00551 0.94028 0.90451 1.20573 0.96609 0.94213 0.85353 1.42341 1.66814 1.27784 1.00587 1.19243 1.28616 1.05346 0.83690 0.91151 1.24739 1.01109 0.97396 0.97862 1.69660 1.43717 1.16500 1.28471 0.86175 0.78032 0.77487 0.84424 1.21741 1.21800 1.20766 1.21500 1.00311 0.95310 0.82721 1.45883 1.56400 1.27927 1.05254 1.17091 0.79549 0.84060 0.82167 1.90823 1.40537 1.23745 1.86401 1.20159 1.02816 0.93991 0.94618 1.26497 1.07041 1.06652 0.96016 1.83796 1.46989 1.14278 1.11030 1.24763 1.01493 0.97998 0.90086 1.19031 1.06766 0.94953 0.93978 1.22756 1.04555 0.96746 0.97864 1.23937 1.03166 1.00493 0.81678 1.83955 1.60730 1.41618 1.20594 1.24445 0.94341 0.85184 0.99116 1.67013 1.13963 1.08200 1.26734 0.92838 0.93804 0.91110 0.95956 0.96103 0.78187 0.93545 0.91075 0.91078 0.75455 0.79083 0.82589 0.77426 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.94 37.16 0.33 -1.85 16 2 C -0.11 -1.76 2.46 -90.62 -0.22 -1.98 16 3 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 4 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 5 N -0.73 -18.51 5.33 -59.91 -0.32 -18.83 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 10 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.13 1.82 5.06 -4.05 -0.02 1.80 16 15 N -0.70 -9.47 5.28 -61.44 -0.32 -9.80 16 16 C 0.59 8.50 7.79 -12.59 -0.10 8.40 16 17 O -0.54 -9.19 16.65 5.24 0.09 -9.10 16 18 C 0.02 0.24 6.64 -84.91 -0.56 -0.32 16 19 C -0.22 -2.21 10.56 29.61 0.31 -1.90 16 20 S 0.18 1.36 23.07 -107.50 -2.48 -1.12 16 21 C 0.13 1.27 7.46 -14.44 -0.11 1.16 16 22 C -0.14 -1.17 6.32 -103.25 -0.65 -1.82 16 23 C -0.20 -1.17 11.04 -37.48 -0.41 -1.59 16 24 C -0.03 -0.13 12.04 29.34 0.35 0.22 16 25 O -0.17 -1.25 10.54 6.86 0.07 -1.17 16 26 C 0.04 0.32 12.05 29.95 0.36 0.68 16 27 N -0.44 -5.04 10.03 -8.11 -0.08 -5.12 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.57 7.18 -51.93 -0.37 0.19 16 30 H 0.07 1.25 7.18 -51.93 -0.37 0.88 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.11 6.85 -40.82 -0.28 9.83 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.41 5.00 7.13 -40.82 -0.29 4.71 16 38 H 0.19 1.71 7.99 -52.49 -0.42 1.29 16 39 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.21 0.22 8.06 -52.49 -0.42 -0.20 16 41 H 0.22 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -34.30 371.84 -7.82 -42.12 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.09 Total: 8.82 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.99 Total: -1.38 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.00 Total: -61.37 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.16 Total: -10.28 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.48 Total: -1.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.30 -7.82 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319257554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.941 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds