Wall clock time and date at job start Sat Apr 11 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46795 * 2 1 4 4 C 1.53003 * 109.47343 * 239.99983 * 2 1 3 5 5 N 1.46494 * 109.47087 * 184.99766 * 4 2 1 6 6 C 1.46502 * 120.00519 * 270.00205 * 5 4 2 7 7 C 1.34786 * 120.00157 * 90.00223 * 5 4 2 8 8 O 1.21634 * 119.99657 * 354.62433 * 7 5 4 9 9 C 1.47288 * 120.00240 * 174.35451 * 7 5 4 10 10 C 1.35173 * 122.41967 * 173.86724 * 9 7 5 11 11 S 1.71001 * 109.16303 * 179.97438 * 10 9 7 12 12 C 1.75990 * 90.59702 * 359.97438 * 11 10 9 13 13 C 1.47140 * 125.33019 * 179.97438 * 12 11 10 14 14 C 1.36236 * 125.95727 * 0.02699 * 13 12 11 15 15 C 1.40772 * 106.72310 * 179.97438 * 14 13 12 16 16 C 1.34833 * 107.07164 * 0.02562 * 15 14 13 17 17 O 1.34245 * 108.71986 * 359.73037 * 16 15 14 18 18 N 1.30124 * 109.34167 * 359.73996 * 12 11 10 19 19 N 1.46497 * 109.47182 * 119.99634 * 2 1 3 20 20 C 1.36933 * 120.00611 * 275.00056 * 19 2 1 21 21 H 1.08006 * 119.99401 * 0.02562 * 20 19 2 22 22 C 1.38806 * 120.00416 * 179.97438 * 20 19 2 23 23 N 1.31620 * 119.99992 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46982 * 90.00214 * 24 22 20 26 26 H 1.48502 * 109.47143 * 210.00208 * 24 22 20 27 27 H 1.48498 * 109.47229 * 330.00103 * 24 22 20 28 28 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47533 * 300.00274 * 1 2 3 30 30 H 1.08998 * 109.47113 * 60.00196 * 1 2 3 31 31 H 1.09002 * 109.46984 * 64.99756 * 4 2 1 32 32 H 1.08997 * 109.47057 * 304.99674 * 4 2 1 33 33 H 1.09008 * 109.47023 * 265.17183 * 6 5 4 34 34 H 1.08999 * 109.46834 * 25.16167 * 6 5 4 35 35 H 1.08994 * 109.47282 * 145.17178 * 6 5 4 36 36 H 1.08001 * 125.41246 * 359.97438 * 10 9 7 37 37 H 1.07996 * 126.64178 * 359.97438 * 14 13 12 38 38 H 1.08000 * 126.46048 * 180.02562 * 15 14 13 39 39 H 1.07996 * 125.64002 * 179.97438 * 16 15 14 40 40 H 0.97005 * 119.99542 * 95.00199 * 19 2 1 41 41 H 0.97004 * 119.99688 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0758 -1.8986 -0.6115 8 8 3.3872 -2.7305 -0.0518 9 6 5.5383 -2.0661 -0.6617 10 6 6.1778 -3.0542 0.0031 11 16 7.8579 -2.9327 -0.2911 12 6 7.5953 -1.5266 -1.3163 13 6 8.6498 -0.7711 -2.0109 14 6 9.9849 -1.0393 -1.9704 15 6 10.6170 -0.0717 -2.7740 16 6 9.6498 0.7318 -3.2606 17 8 8.4629 0.3035 -2.8025 18 7 6.3222 -1.2626 -1.3681 19 7 2.0183 -0.6905 1.1962 20 6 2.1491 -0.0074 2.3757 21 1 1.8918 1.0404 2.4243 22 6 2.6113 -0.6619 3.5092 23 7 2.9244 -1.9390 3.4502 24 14 2.7891 0.2699 5.1185 25 1 1.5210 0.1786 5.8860 26 1 3.8934 -0.3234 5.9146 27 1 3.0941 1.6951 4.8342 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1583 -2.1370 32 1 1.6055 -1.7198 -1.2951 33 1 4.6137 -0.0322 -2.7806 34 1 3.7761 1.1703 -1.7703 35 1 5.2339 0.3532 -1.1574 36 1 5.7030 -3.8015 0.6216 37 1 10.4654 -1.8394 -1.4269 38 1 11.6768 0.0112 -2.9648 39 1 9.8041 1.5775 -3.9143 40 1 2.2490 -1.6317 1.1526 41 1 3.2470 -2.3963 4.2424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717738708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:23 Heat of formation + Delta-G solvation = 64.208952 kcal Electronic energy + Delta-G solvation = -26663.143277 eV Core-core repulsion = 22866.393628 eV Total energy + Delta-G solvation = -3796.749648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.76457 -40.32838 -38.36892 -35.86377 -34.22270 -33.39277 -31.94868 -31.68301 -29.01283 -28.60711 -27.08862 -26.19491 -24.82344 -23.52899 -22.53660 -22.10454 -20.47093 -19.68249 -18.96742 -18.26606 -17.65086 -17.02181 -16.37634 -16.12994 -15.66904 -15.32349 -15.21044 -14.61888 -13.98168 -13.77840 -13.59526 -13.40573 -13.19540 -13.08312 -12.81067 -12.72519 -12.46261 -12.27922 -12.07297 -11.97647 -11.66418 -11.34702 -11.13392 -10.75948 -10.58465 -10.35223 -10.28497 -10.00317 -9.98256 -9.78514 -9.50889 -9.39538 -9.26050 -8.76551 -8.21543 -7.93120 -6.73195 -5.55484 -2.84088 0.16240 0.88777 1.46204 1.50299 2.12060 2.62506 2.82265 3.47546 3.50480 3.55206 3.56528 3.78805 3.90580 4.61405 4.64722 4.71688 4.84755 5.21949 5.31060 5.47875 5.49538 5.54082 5.65393 5.66285 5.69951 5.76815 5.86254 6.06440 6.10690 6.10734 6.16724 6.35981 6.38089 6.50050 6.74700 6.77961 6.89961 7.05750 7.22841 7.41530 7.83427 7.91846 8.60522 8.76740 9.74254 10.38743 10.79003 11.64955 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003729 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.397959 B = 7507.475641 C = 8233.287466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.043 0.957 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.096 3.904 7 C 0.594 3.406 8 O -0.503 6.503 9 C 0.027 3.973 10 C -0.199 4.199 11 S 0.212 5.788 12 C 0.085 3.915 13 C 0.063 3.937 14 C -0.176 4.176 15 C -0.212 4.212 16 C -0.022 4.022 17 O -0.151 6.151 18 N -0.411 5.411 19 N -0.721 5.721 20 C -0.235 4.235 21 H 0.064 0.936 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.897 3.103 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.284 1.284 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.199 0.801 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.209 0.791 40 H 0.400 0.600 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.398 1.465 -16.282 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.061 0.939 4 C -0.012 4.012 5 N -0.324 5.324 6 C -0.048 4.048 7 C 0.378 3.622 8 O -0.377 6.377 9 C -0.109 4.109 10 C -0.341 4.341 11 S 0.468 5.532 12 C -0.189 4.189 13 C 0.009 3.991 14 C -0.199 4.199 15 C -0.232 4.232 16 C -0.093 4.093 17 O -0.045 6.045 18 N -0.128 5.128 19 N -0.368 5.368 20 C -0.367 4.367 21 H 0.082 0.918 22 C -0.210 4.210 23 N -0.569 5.569 24 Si 0.729 3.271 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.210 1.210 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.216 0.784 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.225 0.775 40 H 0.240 0.760 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.380 1.070 -15.880 22.133 hybrid contribution -0.590 0.541 1.147 1.398 sum 14.790 1.611 -14.733 20.938 Atomic orbital electron populations 1.22407 0.99117 1.00955 0.99905 1.20654 0.91999 0.95613 0.87546 0.93914 1.21895 0.78822 1.02077 0.98400 1.47336 1.06718 1.20625 1.57691 1.21879 0.95301 0.89188 0.98394 1.16896 0.84379 0.82276 0.78650 1.90808 1.62232 1.43422 1.41230 1.20276 0.96550 0.94371 0.99706 1.26731 0.97609 1.04774 1.04992 1.83552 1.03844 1.24415 1.41359 1.24403 0.92034 0.99378 1.03118 1.18880 0.91217 0.90639 0.98345 1.21792 0.91408 1.02757 1.03962 1.21722 1.00918 0.97725 1.02787 1.24306 0.81564 1.01399 1.01983 1.84194 1.32951 1.37376 1.50009 1.67619 1.01187 1.24892 1.19057 1.42813 1.77560 1.11924 1.04544 1.19215 1.36156 0.93607 0.87718 0.91821 1.24706 1.02732 0.95929 0.97613 1.69756 1.50800 1.08325 1.28009 0.86333 0.77205 0.78795 0.84752 1.21911 1.21993 1.21042 0.93366 0.92667 0.94619 0.90872 0.90362 0.93146 0.92351 0.89847 0.78368 0.82764 0.82753 0.77486 0.76025 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.49 37.16 0.35 -2.77 16 2 C 0.15 3.29 3.20 -67.93 -0.22 3.07 16 3 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.11 2.05 5.11 -4.04 -0.02 2.02 16 5 N -0.59 -11.34 2.77 -182.90 -0.51 -11.84 16 6 C 0.10 1.54 9.18 59.85 0.55 2.09 16 7 C 0.59 12.70 7.05 -12.58 -0.09 12.61 16 8 O -0.50 -12.43 13.71 5.25 0.07 -12.36 16 9 C 0.03 0.49 6.38 -84.93 -0.54 -0.05 16 10 C -0.20 -3.23 10.56 29.64 0.31 -2.91 16 11 S 0.21 2.51 22.93 -107.50 -2.46 0.05 16 12 C 0.08 1.19 7.46 -14.66 -0.11 1.08 16 13 C 0.06 0.77 7.24 -36.69 -0.27 0.50 16 14 C -0.18 -1.67 10.63 -39.34 -0.42 -2.09 16 15 C -0.21 -1.65 10.88 -39.83 -0.43 -2.08 16 16 C -0.02 -0.18 12.08 29.52 0.36 0.18 16 17 O -0.15 -1.80 10.67 4.55 0.05 -1.75 16 18 N -0.41 -6.79 6.89 -8.28 -0.06 -6.85 16 19 N -0.72 -19.61 4.52 -53.43 -0.24 -19.85 16 20 C -0.24 -6.95 9.93 -15.06 -0.15 -7.10 16 21 H 0.06 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.92 -29.32 13.06 55.49 0.72 -28.59 16 24 Si 0.90 23.47 29.55 -169.99 -5.02 18.44 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 32 H 0.08 1.51 7.50 -51.93 -0.39 1.12 16 33 H 0.05 0.73 8.07 -51.92 -0.42 0.31 16 34 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 35 H 0.08 1.47 5.82 -51.93 -0.30 1.17 16 36 H 0.20 3.23 8.00 -52.49 -0.42 2.81 16 37 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.40 11.72 4.78 -40.82 -0.20 11.52 16 41 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -36.66 363.22 -7.81 -44.47 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.06 Total: 8.77 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.77 Total: 4.05 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.08 Total: -67.14 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.12 Total: -14.12 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.44 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.46 Total: 0.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.66 -7.81 -44.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717738708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.682 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds