Wall clock time and date at job start Sat Apr 11 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46795 * 2 1 4 4 C 1.53003 * 109.47343 * 239.99983 * 2 1 3 5 5 N 1.46494 * 109.47087 * 184.99766 * 4 2 1 6 6 C 1.46502 * 120.00519 * 270.00205 * 5 4 2 7 7 C 1.34786 * 120.00157 * 90.00223 * 5 4 2 8 8 O 1.21634 * 119.99657 * 354.62433 * 7 5 4 9 9 C 1.47288 * 120.00240 * 174.35451 * 7 5 4 10 10 C 1.35173 * 122.41967 * 173.86724 * 9 7 5 11 11 S 1.71001 * 109.16303 * 179.97438 * 10 9 7 12 12 C 1.75990 * 90.59702 * 359.97438 * 11 10 9 13 13 C 1.47140 * 125.33019 * 179.97438 * 12 11 10 14 14 C 1.36236 * 125.95727 * 0.02699 * 13 12 11 15 15 C 1.40772 * 106.72310 * 179.97438 * 14 13 12 16 16 C 1.34833 * 107.07164 * 0.02562 * 15 14 13 17 17 O 1.34245 * 108.71986 * 359.73037 * 16 15 14 18 18 N 1.30124 * 109.34167 * 359.73996 * 12 11 10 19 19 N 1.46497 * 109.47182 * 119.99634 * 2 1 3 20 20 C 1.36933 * 120.00611 * 275.00056 * 19 2 1 21 21 H 1.08006 * 119.99401 * 0.02562 * 20 19 2 22 22 C 1.38806 * 120.00416 * 179.97438 * 20 19 2 23 23 N 1.31620 * 119.99992 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46982 * 90.00214 * 24 22 20 26 26 H 1.48502 * 109.47143 * 210.00208 * 24 22 20 27 27 H 1.48498 * 109.47229 * 330.00103 * 24 22 20 28 28 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47533 * 300.00274 * 1 2 3 30 30 H 1.08998 * 109.47113 * 60.00196 * 1 2 3 31 31 H 1.09002 * 109.46984 * 64.99756 * 4 2 1 32 32 H 1.08997 * 109.47057 * 304.99674 * 4 2 1 33 33 H 1.09008 * 109.47023 * 265.17183 * 6 5 4 34 34 H 1.08999 * 109.46834 * 25.16167 * 6 5 4 35 35 H 1.08994 * 109.47282 * 145.17178 * 6 5 4 36 36 H 1.08001 * 125.41246 * 359.97438 * 10 9 7 37 37 H 1.07996 * 126.64178 * 359.97438 * 14 13 12 38 38 H 1.08000 * 126.46048 * 180.02562 * 15 14 13 39 39 H 1.07996 * 125.64002 * 179.97438 * 16 15 14 40 40 H 0.97005 * 119.99542 * 95.00199 * 19 2 1 41 41 H 0.97004 * 119.99688 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0758 -1.8986 -0.6115 8 8 3.3872 -2.7305 -0.0518 9 6 5.5383 -2.0661 -0.6617 10 6 6.1778 -3.0542 0.0031 11 16 7.8579 -2.9327 -0.2911 12 6 7.5953 -1.5266 -1.3163 13 6 8.6498 -0.7711 -2.0109 14 6 9.9849 -1.0393 -1.9704 15 6 10.6170 -0.0717 -2.7740 16 6 9.6498 0.7318 -3.2606 17 8 8.4629 0.3035 -2.8025 18 7 6.3222 -1.2626 -1.3681 19 7 2.0183 -0.6905 1.1962 20 6 2.1491 -0.0074 2.3757 21 1 1.8918 1.0404 2.4243 22 6 2.6113 -0.6619 3.5092 23 7 2.9244 -1.9390 3.4502 24 14 2.7891 0.2699 5.1185 25 1 1.5210 0.1786 5.8860 26 1 3.8934 -0.3234 5.9146 27 1 3.0941 1.6951 4.8342 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1583 -2.1370 32 1 1.6055 -1.7198 -1.2951 33 1 4.6137 -0.0322 -2.7806 34 1 3.7761 1.1703 -1.7703 35 1 5.2339 0.3532 -1.1574 36 1 5.7030 -3.8015 0.6216 37 1 10.4654 -1.8394 -1.4269 38 1 11.6768 0.0112 -2.9648 39 1 9.8041 1.5775 -3.9143 40 1 2.2490 -1.6317 1.1526 41 1 3.2470 -2.3963 4.2424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717738708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:23 Heat of formation + Delta-G solvation = 39.134360 kcal Electronic energy + Delta-G solvation = -26664.230592 eV Core-core repulsion = 22866.393628 eV Total energy + Delta-G solvation = -3797.836964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.49350 -41.66836 -39.77104 -37.57640 -35.98013 -34.14380 -33.87679 -32.76283 -30.61701 -29.97146 -28.51512 -27.55128 -26.08551 -25.58354 -23.72883 -22.84970 -21.63423 -21.08099 -20.22636 -19.63027 -19.09048 -18.50398 -17.47922 -17.23656 -16.93991 -16.87481 -16.52631 -16.25901 -15.58542 -15.46929 -14.95826 -14.61279 -14.50935 -14.08346 -13.94171 -13.83525 -13.79916 -13.58317 -13.49314 -13.41640 -13.09541 -12.90920 -12.85423 -12.75627 -12.42521 -12.19535 -11.86561 -11.60604 -11.27164 -11.15372 -10.94834 -10.86094 -10.73353 -10.33002 -9.52967 -9.05562 -8.89423 -7.83866 -5.12984 -0.89216 -0.12666 0.35808 0.40048 1.26314 1.40580 1.43658 1.51201 1.75502 2.04788 2.11091 2.41999 2.56718 2.79900 3.44268 3.61272 3.89527 4.00934 4.05127 4.12905 4.17580 4.18435 4.37006 4.47367 4.54573 4.62246 4.71571 4.76744 4.80861 4.90541 4.96440 5.03123 5.09121 5.11163 5.25623 5.46511 5.52081 5.53321 5.72892 6.01441 6.27613 6.35161 6.45396 7.20445 7.43467 8.28456 8.54320 9.37555 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003729 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.397959 B = 7507.475641 C = 8233.287466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.043 0.957 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.100 3.900 7 C 0.580 3.420 8 O -0.553 6.553 9 C 0.002 3.998 10 C -0.234 4.234 11 S 0.310 5.690 12 C 0.082 3.918 13 C 0.014 3.986 14 C -0.156 4.156 15 C -0.218 4.218 16 C -0.011 4.011 17 O -0.177 6.177 18 N -0.435 5.435 19 N -0.739 5.739 20 C -0.237 4.237 21 H 0.068 0.932 22 C -0.078 4.078 23 N -0.959 5.959 24 Si 0.966 3.034 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.272 1.272 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.247 0.753 40 H 0.388 0.612 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.810 3.532 -17.970 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.061 0.939 4 C -0.008 4.008 5 N -0.324 5.324 6 C -0.042 4.042 7 C 0.366 3.634 8 O -0.431 6.431 9 C -0.134 4.134 10 C -0.377 4.377 11 S 0.569 5.431 12 C -0.192 4.192 13 C -0.039 4.039 14 C -0.179 4.179 15 C -0.236 4.236 16 C -0.081 4.081 17 O -0.073 6.073 18 N -0.152 5.152 19 N -0.385 5.385 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.271 4.271 23 N -0.610 5.610 24 Si 0.795 3.205 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.197 1.197 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.140 0.860 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.202 0.798 37 H 0.192 0.808 38 H 0.204 0.796 39 H 0.263 0.737 40 H 0.225 0.775 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.787 3.191 -17.614 25.235 hybrid contribution -1.143 -0.009 1.498 1.885 sum 16.643 3.181 -16.115 23.384 Atomic orbital electron populations 1.22231 0.97045 1.00705 1.01240 1.20970 0.93388 0.95328 0.86869 0.93864 1.21928 0.78574 1.01614 0.98704 1.47525 1.07295 1.20639 1.56903 1.21945 0.94567 0.89014 0.98665 1.17470 0.85734 0.82201 0.77999 1.90756 1.63681 1.45144 1.43524 1.20035 0.95605 0.96032 1.01723 1.26843 1.00940 1.04535 1.05337 1.83003 0.99225 1.21984 1.38910 1.24938 0.91903 0.99855 1.02512 1.18925 0.91537 0.92374 1.01042 1.22227 0.90365 1.02744 1.02610 1.22153 1.02461 0.96895 1.02139 1.25254 0.80444 1.01607 1.00755 1.84174 1.34965 1.37656 1.50509 1.67584 1.02139 1.25360 1.20100 1.43076 1.78031 1.11682 1.05726 1.19599 1.34716 0.93848 0.88816 0.91390 1.25526 1.03518 0.96873 1.01135 1.69962 1.52490 1.10034 1.28482 0.85255 0.76855 0.77974 0.80405 1.21540 1.22333 1.19659 0.94417 0.94490 0.90002 0.86037 0.91902 0.91474 0.90444 0.91422 0.79766 0.80758 0.79607 0.73711 0.77464 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 9.49 71.98 0.68 -5.00 16 2 C 0.14 6.17 3.20 44.99 0.14 6.32 16 3 H 0.04 1.84 8.08 -2.38 -0.02 1.82 16 4 C 0.11 4.18 5.11 86.38 0.44 4.63 16 5 N -0.59 -23.17 2.77 -850.80 -2.36 -25.53 16 6 C 0.10 3.20 9.18 127.77 1.17 4.38 16 7 C 0.58 26.28 7.05 86.62 0.61 26.89 16 8 O -0.55 -29.47 13.71 -4.14 -0.06 -29.53 16 9 C 0.00 0.08 6.38 40.70 0.26 0.34 16 10 C -0.23 -8.05 10.56 67.11 0.71 -7.34 16 11 S 0.31 7.18 22.93 -56.49 -1.30 5.89 16 12 C 0.08 2.27 7.46 87.28 0.65 2.92 16 13 C 0.01 0.33 7.24 24.14 0.17 0.50 16 14 C -0.16 -2.49 10.63 22.42 0.24 -2.25 16 15 C -0.22 -2.52 10.88 22.11 0.24 -2.28 16 16 C -0.01 -0.14 12.08 67.04 0.81 0.67 16 17 O -0.18 -3.95 10.67 -6.62 -0.07 -4.02 16 18 N -0.44 -14.76 6.89 -180.11 -1.24 -16.00 16 19 N -0.74 -41.46 4.52 -322.95 -1.46 -42.92 16 20 C -0.24 -14.33 9.93 84.03 0.83 -13.49 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 23 N -0.96 -63.64 13.06 21.65 0.28 -63.36 16 24 Si 0.97 49.38 29.55 68.60 2.03 51.40 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 26 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 27 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.12 3.21 8.07 -2.39 -0.02 3.19 16 32 H 0.06 2.50 7.50 -2.39 -0.02 2.48 16 33 H 0.07 1.90 8.07 -2.38 -0.02 1.88 16 34 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 35 H 0.07 2.43 5.82 -2.39 -0.01 2.41 16 36 H 0.19 6.68 8.00 -2.91 -0.02 6.66 16 37 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 39 H 0.25 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.39 23.88 4.78 -92.70 -0.44 23.43 16 41 H 0.24 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -85.10 363.22 3.88 -81.22 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.62 Total: 30.96 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.44 Total: 11.89 kcal Atomic # 7 Polarization: -143.03 SS G_CDS: -4.78 Total: -147.81 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.13 Total: -33.55 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.03 Total: 51.40 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -1.30 Total: 5.89 kcal Total: -85.10 3.88 -81.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717738708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.352 kcal (2) G-P(sol) polarization free energy of solvation -85.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds